mRNA_P-wetherbeei_contig7415.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig7415.1.1
Unique NamemRNA_P-wetherbeei_contig7415.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig7415.1.1 vs. uniprot
Match: D8LN02_ECTSI (Dynein heavy chain dynein heavy chain n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LN02_ECTSI)

HSP 1 Score: 99.4 bits (246), Expect = 3.100e-22
Identity = 47/88 (53.41%), Postives = 68/88 (77.27%), Query Frame = 1 
Query:    1 QDAERLPEVAKLDCITVSLAPLKSAVHEQLQQLHDTLLLSLRSRVLADFRTVDGFLQDSMERLGHRPKTVADIILAKCKWKTIEDKKE 264
            ++AE+LPE+ K+DCITVS+ P K+ + +QLQ+L D L +SLR+ VL++F+ VD FL+DSME+L  RP+T+ DI  AK  WK +E KK+
Sbjct:  280 REAEKLPEIIKVDCITVSMFPFKACIEDQLQRLADALTVSLRNAVLSNFKAVDVFLEDSMEKLSRRPRTIDDIGEAKRDWKEMESKKD 367
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BLAST of mRNA_P-wetherbeei_contig7415.1.1 vs. uniprot
Match: A0A6H5L423_9PHAE (DHC_N2 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L423_9PHAE)

HSP 1 Score: 91.3 bits (225), Expect = 1.950e-19
Identity = 47/88 (53.41%), Postives = 67/88 (76.14%), Query Frame = 1 
Query:   25 VAKLDCITVSLAPLKSAVHEQLQQLHDTLLLSLRSRVLADFRTVDGFLQDSMERLGHRPKTVADIILAKCKWKTIEDKK-EVRVLNRK 285
            +A++DCITVS+ PLK+ + +QLQ+L D L +SLR+ VL++F+ VD FL+DSME+L  RP+T+ DI  AK  WK +E KK E+R L+ K
Sbjct:   40 LAQVDCITVSMFPLKACIEDQLQRLADALTVSLRNAVLSNFKAVDAFLEDSMEKLSRRPRTINDIGEAKRDWKEMESKKDEIRRLSTK 127
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BLAST of mRNA_P-wetherbeei_contig7415.1.1 vs. uniprot
Match: A0A7S3MAE9_9STRA (Hypothetical protein (Fragment) n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3MAE9_9STRA)

HSP 1 Score: 83.2 bits (204), Expect = 8.220e-19
Identity = 41/87 (47.13%), Postives = 64/87 (73.56%), Query Frame = 1 
Query:    1 QDAERLPEVAKLDCITVSLAPLKSAVHEQLQQLHDTLLLSLRSRVLADFRTVDGFLQDSMERLGHRPKTVADIILAKCKWKTIEDKK 261
            +D ++LP++ K+DCITVSLAP K+ + E L ++ DTLL++LR  ++ +F+ VD FL+ S ERL  +PK+V +I  AK +WK I++ K
Sbjct:    4 KDIDKLPDIEKIDCITVSLAPFKTFLDELLLRVGDTLLVNLRRSLIEEFKEVDMFLESSSERLYSKPKSVDEISEAKKQWKEIDNAK 90
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BLAST of mRNA_P-wetherbeei_contig7415.1.1 vs. uniprot
Match: A0A836CKL8_9STRA (DHC_N1 domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CKL8_9STRA)

HSP 1 Score: 89.0 bits (219), Expect = 1.350e-18
Identity = 44/83 (53.01%), Postives = 59/83 (71.08%), Query Frame = 1 
Query:   16 LPEVAKLDCITVSLAPLKSAVHEQLQQLHDTLLLSLRSRVLADFRTVDGFLQDSMERLGHRPKTVADIILAKCKWKTIEDKKE 264
            LP+ A++DC  VSL PLKSAV +QLQ+L D LLL+LR +VL  F+ VD FL + MERLG RP+TV +I  A   W  ++ ++E
Sbjct:  931 LPDFARVDCFAVSLLPLKSAVDDQLQRLGDALLLALRKKVLTQFKEVDAFLAEGMERLGRRPRTVEEIGAATRDWSALDAQRE 1013
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BLAST of mRNA_P-wetherbeei_contig7415.1.1 vs. uniprot
Match: A0A7S1CH85_9STRA (Hypothetical protein (Fragment) n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1CH85_9STRA)

HSP 1 Score: 84.0 bits (206), Expect = 7.590e-17
Identity = 40/87 (45.98%), Postives = 62/87 (71.26%), Query Frame = 1 
Query:    1 QDAERLPEVAKLDCITVSLAPLKSAVHEQLQQLHDTLLLSLRSRVLADFRTVDGFLQDSMERLGHRPKTVADIILAKCKWKTIEDKK 261
            ++ E+LP+  K+DC+TVS AP ++AV +Q+Q+L D L+LSLR  +    ++V+ FL+ +MERL  RP ++ +I  AK +WK I DKK
Sbjct:  438 KECEKLPDFHKVDCVTVSAAPFRAAVEDQMQRLSDALVLSLRKSLSEHLKSVEDFLERAMERLNERPHSIDEIGKAKREWKDIADKK 524
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BLAST of mRNA_P-wetherbeei_contig7415.1.1 vs. uniprot
Match: A0A6S7I564_PARCT (Cytoplasmic dynein 2 heavy chain 1-like (Fragment) n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A6S7I564_PARCT)

HSP 1 Score: 75.9 bits (185), Expect = 5.270e-14
Identity = 38/86 (44.19%), Postives = 57/86 (66.28%), Query Frame = 1 
Query:    1 QDAERLPEVAKLDCITVSLAPLKSAVHEQLQQLHDTLLLSLRSRVLADFRTVDGFLQDSMERLGHRPKTVADIILAKCKWKTIEDK 258
            ++AE+LP   K+DCITVS AP+K+ + + +QQL D LL SLR  ++   +T+D F+ + ME L  RP+TV +I LA  K + +  K
Sbjct:  638 REAEKLPGSIKVDCITVSTAPVKTTIDDLIQQLFDALLNSLRRNIVNHIQTIDNFVTEGMESLSTRPQTVEEIGLANAKHEELSKK 723
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BLAST of mRNA_P-wetherbeei_contig7415.1.1 vs. uniprot
Match: A0A2C9L300_BIOGL (Uncharacterized protein n=2 Tax=Biomphalaria glabrata TaxID=6526 RepID=A0A2C9L300_BIOGL)

HSP 1 Score: 75.5 bits (184), Expect = 6.810e-14
Identity = 42/93 (45.16%), Postives = 59/93 (63.44%), Query Frame = 1 
Query:    1 QDAERLPEVAKLDCITVSLAPLKSAVHEQLQQLHDTLLLSLRSRVLADFRTVDGFLQDSMERLGHRPKTVADIILAKCKW-KTIEDKKEVRVL 276
            +DAE+LP V K+DCITVS  P+KS + + +Q+L D LL SLR  +  D   +DGF+  + E L  RP+TV +I  A  K  + +  KKEV+ L
Sbjct:  278 RDAEKLPNVVKVDCITVSTTPVKSVIDDLIQRLFDALLNSLRKSINKDVSQIDGFVSTATETLSQRPQTVQEIGEANAKHTEFMATKKEVKPL 370
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BLAST of mRNA_P-wetherbeei_contig7415.1.1 vs. uniprot
Match: A0A067CTG5_SAPPC (Uncharacterized protein n=1 Tax=Saprolegnia parasitica (strain CBS 223.65) TaxID=695850 RepID=A0A067CTG5_SAPPC)

HSP 1 Score: 75.5 bits (184), Expect = 7.460e-14
Identity = 32/84 (38.10%), Postives = 59/84 (70.24%), Query Frame = 1 
Query:    1 QDAERLPEVAKLDCITVSLAPLKSAVHEQLQQLHDTLLLSLRSRVLADFRTVDGFLQDSMERLGHRPKTVADIILAKCKWKTIE 252
            ++ +++P++ K+DC++VSL+PLK+ + + L +L D+LL SLR  ++   + V+ +L  SME+L  RP ++ +I  AK  WK+I+
Sbjct:  860 KECDKIPDMLKVDCVSVSLSPLKAGIDDHLTRLQDSLLQSLRKSIMTHLKQVEEYLDTSMEKLNKRPHSIDEIGAAKVDWKSID 943
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BLAST of mRNA_P-wetherbeei_contig7415.1.1 vs. uniprot
Match: T0R6A9_SAPDV (Uncharacterized protein n=1 Tax=Saprolegnia diclina (strain VS20) TaxID=1156394 RepID=T0R6A9_SAPDV)

HSP 1 Score: 75.1 bits (183), Expect = 1.020e-13
Identity = 33/84 (39.29%), Postives = 58/84 (69.05%), Query Frame = 1 
Query:    1 QDAERLPEVAKLDCITVSLAPLKSAVHEQLQQLHDTLLLSLRSRVLADFRTVDGFLQDSMERLGHRPKTVADIILAKCKWKTIE 252
            ++ +++P++ K+DC++VSL+PLK+ + + L +L D+LL SLR  +    + V+ +L  SME+L  RP ++ +I  AK  WKTI+
Sbjct:  888 KECDKIPDLLKVDCVSVSLSPLKAGIDDHLTRLQDSLLQSLRKSITTHLKQVEEYLDTSMEKLNKRPHSIDEIGAAKGDWKTID 971
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BLAST of mRNA_P-wetherbeei_contig7415.1.1 vs. uniprot
Match: A0A8B7ZBN6_ACAPL (Cytoplasmic dynein 2 heavy chain 1 n=4 Tax=Valvatida TaxID=41166 RepID=A0A8B7ZBN6_ACAPL)

HSP 1 Score: 74.3 bits (181), Expect = 1.910e-13
Identity = 39/87 (44.83%), Postives = 55/87 (63.22%), Query Frame = 1 
Query:    1 QDAERLPEVAKLDCITVSLAPLKSAVHEQLQQLHDTLLLSLRSRVLADFRTVDGFLQDSMERLGHRPKTVADIILAKCKWKTIEDKK 261
            +D+E+LP   K+DCITVS AP+K+ +   +Q+L D LL SLR  +      +D FL+DSME L  RP+TV +I  A  K   ++ KK
Sbjct:  896 RDSEKLPSQIKVDCITVSAAPVKTTIDSLIQRLFDALLSSLRYSITEHINEIDRFLKDSMEALSTRPQTVEEIGKANAKHAELQAKK 982
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig7415.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LN02_ECTSI3.100e-2253.41Dynein heavy chain dynein heavy chain n=1 Tax=Ecto... [more]
A0A6H5L423_9PHAE1.950e-1953.41DHC_N2 domain-containing protein n=1 Tax=Ectocarpu... [more]
A0A7S3MAE9_9STRA8.220e-1947.13Hypothetical protein (Fragment) n=1 Tax=Spumella e... [more]
A0A836CKL8_9STRA1.350e-1853.01DHC_N1 domain-containing protein n=1 Tax=Tribonema... [more]
A0A7S1CH85_9STRA7.590e-1745.98Hypothetical protein (Fragment) n=1 Tax=Bicosoecid... [more]
A0A6S7I564_PARCT5.270e-1444.19Cytoplasmic dynein 2 heavy chain 1-like (Fragment)... [more]
A0A2C9L300_BIOGL6.810e-1445.16Uncharacterized protein n=2 Tax=Biomphalaria glabr... [more]
A0A067CTG5_SAPPC7.460e-1438.10Uncharacterized protein n=1 Tax=Saprolegnia parasi... [more]
T0R6A9_SAPDV1.020e-1339.29Uncharacterized protein n=1 Tax=Saprolegnia diclin... [more]
A0A8B7ZBN6_ACAPL1.910e-1344.83Cytoplasmic dynein 2 heavy chain 1 n=4 Tax=Valvati... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig7415contigP-wetherbeei_contig7415:233..517 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D8LN02
Preferred nameDYNC2H1
PFAMsAAA_5,AAA_6,AAA_7,AAA_8,AAA_9,DHC_N1,DHC_N2,Dynein_heavy,MT
Model size285
Max annot lvl2759|Eukaryota
KEGG koko:K05636,ko:K10414
KEGG Pathwayko04145,ko04151,ko04510,ko04512,ko04962,ko05132,ko05145,ko05146,ko05165,ko05200,ko05222,map04145,map04151,map04510,map04512,map04962,map05132,map05145,map05146,map05165,map05200,map05222
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0000226,GO:0001568,GO:0001578,GO:0001944,GO:0002119,GO:0002164,GO:0003002,GO:0003008,GO:0003341,GO:0003674,GO:0003774,GO:0003777,GO:0003824,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005794,GO:0005856,GO:0005858,GO:0005868,GO:0005874,GO:0005875,GO:0005929,GO:0005930,GO:0006508,GO:0006807,GO:0006810,GO:0006928,GO:0006996,GO:0007010,GO:0007017,GO:0007018,GO:0007030,GO:0007275,GO:0007368,GO:0007389,GO:0007399,GO:0007417,GO:0007420,GO:0007507,GO:0007600,GO:0007605,GO:0007610,GO:0007617,GO:0007618,GO:0007619,GO:0007626,GO:0007628,GO:0007635,GO:0007638,GO:0008049,GO:0008104,GO:0008150,GO:0008152,GO:0008344,GO:0008569,GO:0008589,GO:0009605,GO:0009612,GO:0009628,GO:0009653,GO:0009790,GO:0009791,GO:0009799,GO:0009855,GO:0009953,GO:0009966,GO:0009967,GO:0009968,GO:0009987,GO:0010256,GO:0010467,GO:0010646,GO:0010647,GO:0010648,GO:0010970,GO:0010996,GO:0012505,GO:0015630,GO:0016043,GO:0016462,GO:0016485,GO:0016545,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017015,GO:0017111,GO:0019098,GO:0019538,GO:0019953,GO:0021510,GO:0021515,GO:0021517,GO:0021522,GO:0021953,GO:0022008,GO:0022414,GO:0022607,GO:0022611,GO:0023051,GO:0023056,GO:0023057,GO:0030030,GO:0030031,GO:0030154,GO:0030182,GO:0030286,GO:0030326,GO:0030512,GO:0030534,GO:0030705,GO:0030900,GO:0030990,GO:0031223,GO:0031503,GO:0031514,GO:0032501,GO:0032502,GO:0032504,GO:0032838,GO:0032991,GO:0033036,GO:0033365,GO:0034613,GO:0034622,GO:0035082,GO:0035107,GO:0035108,GO:0035113,GO:0035721,GO:0035735,GO:0036156,GO:0036159,GO:0040024,GO:0042073,GO:0042221,GO:0042623,GO:0042995,GO:0043053,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043933,GO:0044085,GO:0044238,GO:0044422,GO:0044424,GO:0044430,GO:0044441,GO:0044444,GO:0044446,GO:0044447,GO:0044458,GO:0044463,GO:0044464,GO:0044703,GO:0044782,GO:0045177,GO:0045184,GO:0045433,GO:0045503,GO:0045505,GO:0045880,GO:0046907,GO:0048065,GO:0048513,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048580,GO:0048582,GO:0048583,GO:0048584,GO:0048585,GO:0048598,GO:0048609,GO:0048699,GO:0048731,GO:0048736,GO:0048856,GO:0048869,GO:0050789,GO:0050793,GO:0050794,GO:0050877,GO:0050896,GO:0050954,GO:0051094,GO:0051179,GO:0051234,GO:0051239,GO:0051240,GO:0051604,GO:0051641,GO:0051649,GO:0051704,GO:0051959,GO:0055115,GO:0060173,GO:0060179,GO:0060271,GO:0060322,GO:0060976,GO:0061062,GO:0061063,GO:0061065,GO:0061066,GO:0061512,GO:0065003,GO:0065007,GO:0070286,GO:0070727,GO:0070925,GO:0071704,GO:0071840,GO:0072358,GO:0072359,GO:0072594,GO:0090092,GO:0090101,GO:0090287,GO:0090288,GO:0090659,GO:0097014,GO:0097542,GO:0097730,GO:0099080,GO:0099081,GO:0099111,GO:0099512,GO:0099513,GO:0099568,GO:0120025,GO:0120031,GO:0120036,GO:0120038,GO:1901564,GO:1902494,GO:1903844,GO:1903845,GO:1905515,GO:1990939,GO:2000026
Exons1
Evalue5.09e-23
EggNOG OGsCOG5245@1|root,KOG3595@2759|Eukaryota
Descriptiondynein light chain binding
Cds size285
COG categoryZ
BRITEko00000,ko00001,ko03036,ko04516,ko04812
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186980.0252428-CDS-P-wetherbeei_contig7415:232..5171683186980.0252428-CDS-P-wetherbeei_contig7415:232..517Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig7415 233..517 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig7415.1.1prot_P-wetherbeei_contig7415.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig7415 233..517 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig7415.1.1

>prot_P-wetherbeei_contig7415.1.1 ID=prot_P-wetherbeei_contig7415.1.1|Name=mRNA_P-wetherbeei_contig7415.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=95bp
QDAERLPEVAKLDCITVSLAPLKSAVHEQLQQLHDTLLLSLRSRVLADFR
TVDGFLQDSMERLGHRPKTVADIILAKCKWKTIEDKKEVRVLNRK
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mRNA from alignment at P-wetherbeei_contig7415:233..517+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig7415.1.1 ID=mRNA_P-wetherbeei_contig7415.1.1|Name=mRNA_P-wetherbeei_contig7415.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=285bp|location=Sequence derived from alignment at P-wetherbeei_contig7415:233..517+ (Phaeothamnion wetherbeei SAG_119_79)
CAGGATGCGGAGCGGCTGCCCGAAGTGGCCAAGCTAGACTGCATCACCGT
CTCGCTGGCGCCCCTCAAGTCCGCTGTGCACGAGCAGCTACAGCAGCTCC
ACGACACACTGCTGCTGTCGCTGCGCAGCCGCGTCCTGGCCGACTTCCGG
ACGGTCGACGGCTTCCTGCAGGACTCGATGGAGCGGCTCGGGCACCGCCC
CAAGACCGTCGCTGACATCATCCTCGCCAAGTGCAAGTGGAAGACCATCG
AGGACAAGAAGGAAGTACGTGTCTTAAACAGAAAA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig7415:233..517+

>mRNA_P-wetherbeei_contig7415.1.1 ID=mRNA_P-wetherbeei_contig7415.1.1|Name=mRNA_P-wetherbeei_contig7415.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=285bp|location=Sequence derived from alignment at P-wetherbeei_contig7415:233..517+ (Phaeothamnion wetherbeei SAG_119_79)
CAGGATGCGGAGCGGCTGCCCGAAGTGGCCAAGCTAGACTGCATCACCGT
CTCGCTGGCGCCCCTCAAGTCCGCTGTGCACGAGCAGCTACAGCAGCTCC
ACGACACACTGCTGCTGTCGCTGCGCAGCCGCGTCCTGGCCGACTTCCGG
ACGGTCGACGGCTTCCTGCAGGACTCGATGGAGCGGCTCGGGCACCGCCC
CAAGACCGTCGCTGACATCATCCTCGCCAAGTGCAAGTGGAAGACCATCG
AGGACAAGAAGGAAGTACGTGTCTTAAACAGAAAA
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