mRNA_P-wetherbeei_contig7412.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig7412.2.1
Unique NamemRNA_P-wetherbeei_contig7412.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig7412.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig7412contigP-wetherbeei_contig7412:810..2363 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog192875.XP_004344994.1
PFAMsPeptidase_C2
Model size626
Max annot lvl33154|Opisthokonta
KEGG koko:K08582
Hectar predicted targeting categoryother localisation
Exons4
Evalue2.15e-10
EggNOG OGsKOG0045@1|root,KOG0045@2759|Eukaryota,38DZS@33154|Opisthokonta
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-06_001510.1
Descriptioncalcium-dependent cysteine-type endopeptidase activity
Cds size603
COG categoryO
BRITEko00000,ko01000,ko01002
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186979.828376-UTR-P-wetherbeei_contig7412:809..8321683186979.828376-UTR-P-wetherbeei_contig7412:809..832Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig7412 810..832 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186979.8376007-CDS-P-wetherbeei_contig7412:832..10271683186979.8376007-CDS-P-wetherbeei_contig7412:832..1027Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig7412 833..1027 +
1683186979.845947-CDS-P-wetherbeei_contig7412:1320..14461683186979.845947-CDS-P-wetherbeei_contig7412:1320..1446Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig7412 1321..1446 +
1683186979.8541188-CDS-P-wetherbeei_contig7412:1793..20481683186979.8541188-CDS-P-wetherbeei_contig7412:1793..2048Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig7412 1794..2048 +
1683186979.862187-CDS-P-wetherbeei_contig7412:2336..23631683186979.862187-CDS-P-wetherbeei_contig7412:2336..2363Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig7412 2337..2363 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig7412.2.1prot_P-wetherbeei_contig7412.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig7412 833..2363 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig7412.2.1

>prot_P-wetherbeei_contig7412.2.1 ID=prot_P-wetherbeei_contig7412.2.1|Name=mRNA_P-wetherbeei_contig7412.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=201bp
MATFVVGNAAPGGPSLAGSPCIHCKEIVKVLAGKFSGRYYTVVLWAETGA
VSSDAPPQPHPVHEECWAAFKVGQAPKCTHCGEAICHSPQRFSGRFFDVN
GSKVHSECFPTFRVANAPKCAYCSQGIAPQPGLFSGSYSTVDAGAKVHIE
CMDAWRLRTAHDCLQCRQKIVPEAGRHTGAWYDVDDGQIHAECADQYKVS
A
back to top

mRNA from alignment at P-wetherbeei_contig7412:810..2363+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig7412.2.1 ID=mRNA_P-wetherbeei_contig7412.2.1|Name=mRNA_P-wetherbeei_contig7412.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1554bp|location=Sequence derived from alignment at P-wetherbeei_contig7412:810..2363+ (Phaeothamnion wetherbeei SAG_119_79)
GGGCATTTGGACAGCGGGAGCGAATGGCAACGTTCGTCGTCGGAAACGCG
GCCCCAGGCGGTCCCAGCCTCGCGGGAAGTCCGTGCATCCATTGCAAGGA
GATTGTGAAGGTCTTGGCAGGGAAATTTAGTGGGCGCTACTACACAGTCG
TGCTCTGGGCTGAAACTGGAGCTGTTAGCAGCGACGCACCGCCTCAACCG
CATCCCGTGCACGAGGAGGTCAGTTAATTTCTGACGCGAAACGAGCTTTG
CCGTCGGCGACAGCGTTTCAGCGGGGTCTGCGGTCGGGAGGCTAAATTTA
TATCTTCATTCGTGTCTTGCTTTTCATATCTGCATACGTCTTTTTGGAAT
GCTTATCACGCCTTAATTGGAAGATGGCAGATGGCATGGGATAATGAGAC
GGATATTACCTTGCATTCTCTTTATGTTTCAGATTAGAAAGTAAAAACGC
TTATTGCATTATCAAATTCCGCGTCGTCCACGCCTTTCTCGTATCCTTTT
GTGCGCTGCAGTGCTGGGCGGCATTCAAAGTCGGCCAGGCCCCAAAATGC
ACACATTGCGGCGAGGCCATCTGCCACTCCCCCCAGCGCTTCAGCGGCCG
CTTCTTTGACGTCAACGGCAGCAAAGTCCACAGCGAGGTGAGGACGTCTG
GATCCTTTTTACAGTAACAGCGGTGGCGGCGGGTATTGGTGGTTGCGAGG
GGTTGGGCTCGTCGCCGTTTCTCCAGCGAACGAGGAGAAAAGGCTCCCGT
TTACGACCGTACGAATCGTCTTAACCTTCTGCTGTACCATGCTACTCCCC
TGTTTCTCCTTCTGTTCCTTTCCTGCTGTTTCTCATCTTCCATTTCTTCG
TCCTGTCTCTCGCCGGCCACAAACCTCCCTTCCACGTCGTTCGCTCAACC
GACCTGCCCCTGCCACATACTGCTGCTCCTCCCCGCCGCCACTTCGCCTG
CCGATACACGAATAAACAATCTAACGGAGAGCAGTGCTTCCCGACGTTTC
GGGTGGCCAACGCGCCCAAGTGCGCCTACTGCTCCCAAGGCATCGCGCCT
CAGCCGGGACTTTTCTCGGGCTCCTACTCGACCGTCGACGCCGGCGCCAA
GGTGCACATTGAGTGCATGGACGCCTGGCGGCTGCGGACGGCGCACGACT
GCCTGCAATGCCGCCAGAAGATCGTGCCCGAAGCCGGCCGGCACACGGGG
GCGTGGTACGACGTCGACGACGGGCAAATCCACGCCGAGGTGAGAGGTGG
GGAGGGCGGGACGGATTCGGGCTGCCTGGGAAAAAAACAGGAATGCAGTG
CTTAACAGTATACATCTCCAGCATACATCTCCAGTATACATCTCCAGTGG
CTTTTCTTCTTCCCGACGGGGCAAACACCTCTTCGGACCTTGCCCACACA
GATTTTGCCCAAACAATATCTCCGCTGTGACTGAACCGCTGCCGCCAACA
CTTTCTTCACGTCCTGCCGTGCCGACCCCTATTTCTTGTTCTCACAAGCT
ATCTTTCCGTTTTCTCTTCTCTCGCAGTGCGCCGACCAGTACAAGGTTTC
CGCG
back to top

Coding sequence (CDS) from alignment at P-wetherbeei_contig7412:810..2363+

>mRNA_P-wetherbeei_contig7412.2.1 ID=mRNA_P-wetherbeei_contig7412.2.1|Name=mRNA_P-wetherbeei_contig7412.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=603bp|location=Sequence derived from alignment at P-wetherbeei_contig7412:810..2363+ (Phaeothamnion wetherbeei SAG_119_79)
ATGGCAACGTTCGTCGTCGGAAACGCGGCCCCAGGCGGTCCCAGCCTCGC
GGGAAGTCCGTGCATCCATTGCAAGGAGATTGTGAAGGTCTTGGCAGGGA
AATTTAGTGGGCGCTACTACACAGTCGTGCTCTGGGCTGAAACTGGAGCT
GTTAGCAGCGACGCACCGCCTCAACCGCATCCCGTGCACGAGGAGTGCTG
GGCGGCATTCAAAGTCGGCCAGGCCCCAAAATGCACACATTGCGGCGAGG
CCATCTGCCACTCCCCCCAGCGCTTCAGCGGCCGCTTCTTTGACGTCAAC
GGCAGCAAAGTCCACAGCGAGTGCTTCCCGACGTTTCGGGTGGCCAACGC
GCCCAAGTGCGCCTACTGCTCCCAAGGCATCGCGCCTCAGCCGGGACTTT
TCTCGGGCTCCTACTCGACCGTCGACGCCGGCGCCAAGGTGCACATTGAG
TGCATGGACGCCTGGCGGCTGCGGACGGCGCACGACTGCCTGCAATGCCG
CCAGAAGATCGTGCCCGAAGCCGGCCGGCACACGGGGGCGTGGTACGACG
TCGACGACGGGCAAATCCACGCCGAGTGCGCCGACCAGTACAAGGTTTCC
GCG
back to top