mRNA_P-wetherbeei_contig7405.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig7405.1.1
Unique NamemRNA_P-wetherbeei_contig7405.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig7405.1.1 vs. uniprot
Match: D7G0W8_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G0W8_ECTSI)

HSP 1 Score: 139 bits (351), Expect = 7.650e-35
Identity = 97/285 (34.04%), Postives = 139/285 (48.77%), Query Frame = 3 
Query:   60 MSDAKPKSPRSHSRTRSGSKSPLSRIRSKSSLKVDTESEKKSFFGFGKSISPRSSSDAKSESKEKPAAAPSATGAGTTSPSXXXXXXXXXXXXPMRLFRRS--KPVAVQSNFFRDRLPLTLSALLATALAAVAVSFFYGPGEGPRLLKRDAPLYDGDVLRQNEYINTCAGFISFGCEPRYFELSADGELGLYEGAGPVLPSGGGLFGRVGXXXXXXXXXXXXDGEETVVAKRLWGSGTRVRGRRGVEATFSAEYKDGALVLLRDGKVAWKSPVSRLPRDMQPWPL 908
            MS  +PK+ RS  R++S ++SPL+R  SK++L +DT++   +       ISP   S             P   G     PS            P ++  R   K  ++ S +F   LP  LSA+L+    AVA + F+G G+GP+L+KRDAPL+ GD L+  +YI+ C   I+ GC+P+YFEL  DG LG+Y G  P                                  +LW +GT  +G  G EA +   Y    +VL +DGKV W S V  LP++M+PWPL
Sbjct:    1 MSTIEPKAVRS--RSKSPTRSPLARTASKTNLVIDTQAGHDAADKGEPLISPARFS-------------PITAGKRLLKPSS-----------PRKITMRPVVKEESMLSRYFSQSLPAKLSAVLSVVAIAVAAALFFGEGDGPKLVKRDAPLFPGDRLKGGQYISFCTSIIATGCKPKYFELGRDGSLGVYGGKSPYAQKA-----------------------------KLWTAGTGAKGGGGKEAFYELVYTGDRVVLNKDGKVKWSSSVKSLPKNMRPWPL 230
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BLAST of mRNA_P-wetherbeei_contig7405.1.1 vs. uniprot
Match: A0A836CBU0_9STRA (Plastocyanin-like domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CBU0_9STRA)

HSP 1 Score: 97.1 bits (240), Expect = 1.670e-17
Identity = 63/187 (33.69%), Postives = 90/187 (48.13%), Query Frame = 3 
Query:  396 DRLPLTLSALLATALAAVAVSFFY---GPGEGPRLLKRDAPLYDGDVLRQNEYINTCAGFISF--GCEPRYFELSADGELGLYEGAGPVLPSGGGLFGRVGXXXXXXXXXXXXDGEETVVAKRLWGSGTRVRG---RRGVEATFS-------AEYKDGALVLLRDGKVAWKSPVSRLPRDMQP-WPL 908
            +RL + L  ++   L  VAV+ +Y   GP   PRL++RDAPL DGDVL+  EY+ TC G  +    C P YFELS +GELGL+ G GP+                           +   A++LW SG+  +    +R  ++T         A Y  G L + R  +V W +   RLP  ++  WPL
Sbjct:   23 ERLAVVLGNIVGVLLLLVAVALYYVPPGPAGAPRLIRRDAPLVDGDVLKAGEYMTTCTGITAMVTNCTPMYFELSPNGELGLFRGKGPL---------------------------DDPPAQKLWASGSAAKPSKKKRFAKSTAEQPLLLPRALYAAGQLTVKRGDEVVWAAAAERLPEALRGGWPL 182
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig7405.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G0W8_ECTSI7.650e-3534.04Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A836CBU0_9STRA1.670e-1733.69Plastocyanin-like domain-containing protein n=1 Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig7405contigP-wetherbeei_contig7405:13..2364 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1452
Hectar predicted targeting categoryother localisation
Exons4
Ec32 ortholog descriptionBulb-type lectin domain
Ec32 orthologEc-23_002020.1
Cds size864
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig7405.1.1prot_P-wetherbeei_contig7405.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig7405 72..1835 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186979.3455453-UTR-P-wetherbeei_contig7405:12..711683186979.3455453-UTR-P-wetherbeei_contig7405:12..71Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig7405 13..71 +
1683186979.398194-UTR-P-wetherbeei_contig7405:1835..23641683186979.398194-UTR-P-wetherbeei_contig7405:1835..2364Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig7405 1836..2364 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186979.3586404-CDS-P-wetherbeei_contig7405:71..741683186979.3586404-CDS-P-wetherbeei_contig7405:71..74Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig7405 72..74 +
1683186979.3687932-CDS-P-wetherbeei_contig7405:266..6731683186979.3687932-CDS-P-wetherbeei_contig7405:266..673Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig7405 267..673 +
1683186979.3790174-CDS-P-wetherbeei_contig7405:1064..14461683186979.3790174-CDS-P-wetherbeei_contig7405:1064..1446Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig7405 1065..1446 +
1683186979.388579-CDS-P-wetherbeei_contig7405:1763..18351683186979.388579-CDS-P-wetherbeei_contig7405:1763..1835Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig7405 1764..1835 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig7405.1.1

>prot_P-wetherbeei_contig7405.1.1 ID=prot_P-wetherbeei_contig7405.1.1|Name=mRNA_P-wetherbeei_contig7405.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=288bp
MSDAKPKSPRSHSRTRSGSKSPLSRIRSKSSLKVDTESEKKSFFGFGKSI
SPRSSSDAKSESKEKPAAAPSATGAGTTSPSSPTSPSSGSPRSPMRLFRR
SKPVAVQSNFFRDRLPLTLSALLATALAAVAVSFFYGPGEGPRLLKRDAP
LYDGDVLRQNEYINTCAGFISFGCEPRYFELSADGELGLYEGAGPVLPSG
GGLFGRVGGGGGGGEDTAGGDGEETVVAKRLWGSGTRVRGRRGVEATFSA
EYKDGALVLLRDGKVAWKSPVSRLPRDMQPWPLHAAV*
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mRNA from alignment at P-wetherbeei_contig7405:13..2364+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig7405.1.1 ID=mRNA_P-wetherbeei_contig7405.1.1|Name=mRNA_P-wetherbeei_contig7405.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=2352bp|location=Sequence derived from alignment at P-wetherbeei_contig7405:13..2364+ (Phaeothamnion wetherbeei SAG_119_79)
AATTGCAGAGGAACCGCCACTCACTGAACTTCCCGAGCCGCTGCGGAGTG
AAGACCACCATGGTGAGTTCACATTTGCAAGACGCCCTCGCCTTGGGTGC
TAGATACACATTGCAAAGCTTCATCGAATCTCTCTACCCTTTCACCCTTC
GCCGCTTCAACCCTTTGCATAGCTAGGTTGTAAGGCACGCATTGCAAAGC
TTCATCGAATGTCTTGCCCTTCCTTCCCTTTCGCCGCTTCTACTCTTTCC
ACAGTCCGATGCCAAGCCCAAGTCGCCCCGTTCCCATAGCCGCACCCGGA
GCGGGAGCAAATCCCCGCTTTCCCGCATCCGGAGCAAAAGCAGCCTGAAA
GTCGACACGGAAAGCGAAAAGAAGAGTTTCTTCGGCTTCGGCAAGAGCAT
TTCGCCGCGGAGCAGCTCGGACGCGAAGTCGGAGTCGAAGGAGAAGCCGG
CCGCCGCCCCGTCTGCAACAGGCGCCGGAACGACGTCTCCGTCGTCGCCG
ACGTCGCCCTCCAGCGGAAGCCCGCGGTCGCCGATGAGGTTGTTCAGGCG
TTCGAAGCCCGTCGCCGTGCAGTCGAACTTCTTCAGGGACCGCCTGCCGT
TGACGTTGTCGGCGCTCCTCGCCACCGCGCTGGCCGCCGTTGCGGTGTCT
TTCTTTTATGGGTGAGCCGGCAAATTTGTCTCGCACGATGGGGTTGCGCC
CCCGATCTGTGTTATGGAAATGTGGTTTCGAATCGTCTAAGAGCTCGCCG
TGTGTAGCAAAGTTCCCTTTGGCTCTCTACTTGCGAATAAGTCGACTCCT
GCAGTCCCTCTAGTCGAAAGTAACTGTAGCCATCAGTGCTTTATTTTAGC
GTCGCCATGCCCTACTGCGTTGATTTGGTCTGATTTGATACCCGCCGGGC
CACTTTGCAACAGCGTAAGGCTCGTTGCAATGACTGCGCACCACACTTAT
CATTCTTTTGTGCCTTGCTATTCCCCGCTTTCGCCTCCTTCCATCTAAAT
TTGCTTGTATCGCATACCACCTGCACCGGTGCTGGCGCCGGAAAATTGAC
AGGCCCGGGGAGGGCCCGCGGCTGCTCAAGCGCGACGCCCCGCTCTACGA
CGGCGATGTGCTGCGGCAGAACGAATACATCAACACGTGCGCGGGCTTCA
TCAGCTTCGGCTGCGAGCCGCGCTACTTCGAACTCTCCGCCGACGGCGAG
CTCGGCCTTTACGAGGGCGCCGGCCCCGTCCTGCCGAGCGGCGGTGGACT
TTTCGGCCGTGTTGGCGGCGGCGGTGGCGGCGGCGAAGATACGGCCGGCG
GCGACGGCGAGGAAACTGTCGTGGCGAAGCGTCTGTGGGGCAGCGGCACG
CGCGTGCGTGGGCGGCGCGGCGTCGAGGCGACGTTCTCGGCCGAGTACAA
GGACGGCGCGCTGGTGCTGCTGCGCGACGGCAAGGTGTGTATCTCCTTGG
ACGTGTCTTTCTGAACGGTGTTTTGTTTCCATCTGCGACTTGCCTGTTGA
TGCATGTTTGGAATCCACGGACTGTCTAGTTCTTTGAGCCTCTCTATTTC
AGGTCGGAAATGATAAAAAGCATGTTTGGTGGGTCTTAGAGGTCCGCCGG
CTCTTGTTTGTGCTCTTTTCCTGCCCGATTTCAGCTTCCGCGATAAGAAC
TGGAAGCTACGGCCCCTGACCCCTCGGTACTGATACTACATTTTGACCTT
ATACACTGAGTACACTAAATTGTCACCCTTTTTACTGCTCTGTGCCGGCA
GGTGGCATGGAAATCGCCGGTGTCGCGCCTCCCCAGGGACATGCAGCCCT
GGCCGCTGCACGCCGCTGTCTGAACCAATTGCACCCGCTCTCAAGCGACC
GGGGCGCAGCGTAAGAAAATTGGGGGCAAACAGACGGAAAGGAACGGGAG
GAAATCTAACAGCGCGGTCTGAGATAATGTACTTCGAGGAATTGGCGTGG
CTGAGTGCGGCAGCTGGCGTTGGGCGAGGCTGACGCCCAGCCACCCAAGA
TTGAAGACGGAGGCGCCTGCCCGACTGAATGCGGGAAGGGCGCGACTAGA
GGCGGTTGGCTGGTTCGCTGTACCACGGCGGCCGGCGCCTTGCAGCGAGA
GCGGGAATGGGGCAGCCACTGGCCAGCGGGCTGCAACAGCCCTCTCACCC
ACCTCCATAACAAGGCCGCAGCGGCGCCGAAAAAGAAGGAACGTTAGAAG
CCGCGCGCTTGTGGGTCCGCCAACTTCCGCCGTGCCAGCTATAATTGTGT
AGAGGCAGCGCTCCCCCGCCACTTCAGCACCTGTTAAAGCGTTCGTCAGG
ATTCATTTAGGTGCCTGGCAACCAACAAGGTGAAAGAATTTTCAGAAAGC
CA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig7405:13..2364+

>mRNA_P-wetherbeei_contig7405.1.1 ID=mRNA_P-wetherbeei_contig7405.1.1|Name=mRNA_P-wetherbeei_contig7405.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=864bp|location=Sequence derived from alignment at P-wetherbeei_contig7405:13..2364+ (Phaeothamnion wetherbeei SAG_119_79)
ATGTCCGATGCCAAGCCCAAGTCGCCCCGTTCCCATAGCCGCACCCGGAG
CGGGAGCAAATCCCCGCTTTCCCGCATCCGGAGCAAAAGCAGCCTGAAAG
TCGACACGGAAAGCGAAAAGAAGAGTTTCTTCGGCTTCGGCAAGAGCATT
TCGCCGCGGAGCAGCTCGGACGCGAAGTCGGAGTCGAAGGAGAAGCCGGC
CGCCGCCCCGTCTGCAACAGGCGCCGGAACGACGTCTCCGTCGTCGCCGA
CGTCGCCCTCCAGCGGAAGCCCGCGGTCGCCGATGAGGTTGTTCAGGCGT
TCGAAGCCCGTCGCCGTGCAGTCGAACTTCTTCAGGGACCGCCTGCCGTT
GACGTTGTCGGCGCTCCTCGCCACCGCGCTGGCCGCCGTTGCGGTGTCTT
TCTTTTATGGGCCCGGGGAGGGCCCGCGGCTGCTCAAGCGCGACGCCCCG
CTCTACGACGGCGATGTGCTGCGGCAGAACGAATACATCAACACGTGCGC
GGGCTTCATCAGCTTCGGCTGCGAGCCGCGCTACTTCGAACTCTCCGCCG
ACGGCGAGCTCGGCCTTTACGAGGGCGCCGGCCCCGTCCTGCCGAGCGGC
GGTGGACTTTTCGGCCGTGTTGGCGGCGGCGGTGGCGGCGGCGAAGATAC
GGCCGGCGGCGACGGCGAGGAAACTGTCGTGGCGAAGCGTCTGTGGGGCA
GCGGCACGCGCGTGCGTGGGCGGCGCGGCGTCGAGGCGACGTTCTCGGCC
GAGTACAAGGACGGCGCGCTGGTGCTGCTGCGCGACGGCAAGGTGGCATG
GAAATCGCCGGTGTCGCGCCTCCCCAGGGACATGCAGCCCTGGCCGCTGC
ACGCCGCTGTCTGA
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