mRNA_P-wetherbeei_contig7400.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig7400.1.1
Unique NamemRNA_P-wetherbeei_contig7400.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig7400.1.1 vs. uniprot
Match: A0A835YVC9_9STRA (Magnesium chelatase n=2 Tax=Tribonema minus TaxID=303371 RepID=A0A835YVC9_9STRA)

HSP 1 Score: 154 bits (389), Expect = 1.670e-41
Identity = 72/91 (79.12%), Postives = 79/91 (86.81%), Query Frame = 1 
Query:    4 ATRYDVGDIPSTPMDLMQSILNDDKARFDSPDMNVAYRMPVSEYEELTPYAKDLEENWGAAPGHLNSDGQNLLVFGRRFGNVFIGVQPTFG 276
            A  YDVGD+P T  +LM SILND +AR DSP+MNVAY+M V EYEELTPYA DLEENWG APGHLNSDGQNLL+FGR+FGNVFIGVQPTFG
Sbjct:  569 AKGYDVGDVPETSEELMDSILNDKEARIDSPEMNVAYKMSVREYEELTPYAADLEENWGKAPGHLNSDGQNLLIFGRKFGNVFIGVQPTFG 659
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BLAST of mRNA_P-wetherbeei_contig7400.1.1 vs. uniprot
Match: A0A6U3YD35_9STRA (Magnesium chelatase n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A6U3YD35_9STRA)

HSP 1 Score: 145 bits (365), Expect = 2.860e-38
Identity = 65/88 (73.86%), Postives = 77/88 (87.50%), Query Frame = 1 
Query:   13 YDVGDIPSTPMDLMQSILNDDKARFDSPDMNVAYRMPVSEYEELTPYAKDLEENWGAAPGHLNSDGQNLLVFGRRFGNVFIGVQPTFG 276
            Y +G+IP T  +++  ILND +A+FDSP +NVAY MPVSEYEELTPYAKDLEENWG APGHLN+DG N+LVFG++FGNVFIGVQPTFG
Sbjct:  359 YTIGEIPETTEEIVDMILNDKEAKFDSPTLNVAYSMPVSEYEELTPYAKDLEENWGPAPGHLNTDGTNMLVFGKQFGNVFIGVQPTFG 446
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BLAST of mRNA_P-wetherbeei_contig7400.1.1 vs. uniprot
Match: A0A7R9YAB0_9STRA (Magnesium chelatase (Fragment) n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9YAB0_9STRA)

HSP 1 Score: 144 bits (362), Expect = 7.230e-38
Identity = 68/89 (76.40%), Postives = 78/89 (87.64%), Query Frame = 1 
Query:   13 YDVGD-IPSTPMDLMQSILNDDKARFDSPDMNVAYRMPVSEYEELTPYAKDLEENWGAAPGHLNSDGQNLLVFGRRFGNVFIGVQPTFG 276
            Y+VGD  P     L++SILND +A+FDSP++NVAYRMPV EYE LTPYAKDLEENWG APGHLNSDG+NLLVFG++FGNVFIGVQPTFG
Sbjct:  582 YNVGDDFPEETEALVESILNDKEAKFDSPELNVAYRMPVDEYERLTPYAKDLEENWGPAPGHLNSDGKNLLVFGKQFGNVFIGVQPTFG 670
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BLAST of mRNA_P-wetherbeei_contig7400.1.1 vs. uniprot
Match: D7FW04_ECTSI (Magnesium chelatase n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FW04_ECTSI)

HSP 1 Score: 142 bits (359), Expect = 1.850e-37
Identity = 68/88 (77.27%), Postives = 73/88 (82.95%), Query Frame = 1 
Query:   13 YDVGDIPSTPMDLMQSILNDDKARFDSPDMNVAYRMPVSEYEELTPYAKDLEENWGAAPGHLNSDGQNLLVFGRRFGNVFIGVQPTFG 276
            YDVGD+P     LM+ ILND +AR DSP+MNV YRM V EYEELTPYA DL ENWG APGHLNSDGQNLLVFG +FGNVFIGVQPTFG
Sbjct:  581 YDVGDLPDDSRALMERILNDPEARIDSPEMNVEYRMSVQEYEELTPYAGDLVENWGKAPGHLNSDGQNLLVFGCKFGNVFIGVQPTFG 668
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BLAST of mRNA_P-wetherbeei_contig7400.1.1 vs. uniprot
Match: K9YZA4_CYAAP (Magnesium chelatase n=3 Tax=Cyanobacterium TaxID=102234 RepID=K9YZA4_CYAAP)

HSP 1 Score: 141 bits (356), Expect = 4.700e-37
Identity = 62/88 (70.45%), Postives = 76/88 (86.36%), Query Frame = 1 
Query:   13 YDVGDIPSTPMDLMQSILNDDKARFDSPDMNVAYRMPVSEYEELTPYAKDLEENWGAAPGHLNSDGQNLLVFGRRFGNVFIGVQPTFG 276
            YDV D+P TP +LMQ +++D +A++ SP++NVAYRM V EYE LTPY+K LEENWGA PGHLNSDGQNLL++G+ FGNVFIGVQPTFG
Sbjct:  492 YDVQDVPDTPEELMQMVIHDAQAQYSSPELNVAYRMSVEEYERLTPYSKKLEENWGAPPGHLNSDGQNLLIYGKHFGNVFIGVQPTFG 579
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BLAST of mRNA_P-wetherbeei_contig7400.1.1 vs. uniprot
Match: A0A7S2K5K2_9STRA (Hypothetical protein (Fragment) n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2K5K2_9STRA)

HSP 1 Score: 134 bits (337), Expect = 7.550e-37
Identity = 59/88 (67.05%), Postives = 75/88 (85.23%), Query Frame = 1 
Query:   13 YDVGDIPSTPMDLMQSILNDDKARFDSPDMNVAYRMPVSEYEELTPYAKDLEENWGAAPGHLNSDGQNLLVFGRRFGNVFIGVQPTFG 276
            YD+GD P +  ++M+S+LND +A+  SP++NVAYRM   EY ELTPYA DLEENWG APG+LNSDGQNL+V+G++FGNVFIGVQP+FG
Sbjct:   78 YDIGDAPMSKEEIMESVLNDPEAKVSSPELNVAYRMSTDEYYELTPYATDLEENWGPAPGNLNSDGQNLVVYGKQFGNVFIGVQPSFG 165
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BLAST of mRNA_P-wetherbeei_contig7400.1.1 vs. uniprot
Match: A0A3M0Y4F0_9CYAN (Magnesium chelatase n=1 Tax=Cyanobacteria bacterium J149 TaxID=2420335 RepID=A0A3M0Y4F0_9CYAN)

HSP 1 Score: 140 bits (354), Expect = 8.750e-37
Identity = 61/88 (69.32%), Postives = 76/88 (86.36%), Query Frame = 1 
Query:   13 YDVGDIPSTPMDLMQSILNDDKARFDSPDMNVAYRMPVSEYEELTPYAKDLEENWGAAPGHLNSDGQNLLVFGRRFGNVFIGVQPTFG 276
            YDV D+P TP +LMQ +++D +A++ SP++N+AYRM V EYE LTPY+K LEENWGA PGHLNSDGQNLL++G+ FGNVFIGVQPTFG
Sbjct:  492 YDVQDVPDTPEELMQLVIHDAQAQYSSPELNIAYRMSVEEYERLTPYSKKLEENWGAPPGHLNSDGQNLLIYGKHFGNVFIGVQPTFG 579
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BLAST of mRNA_P-wetherbeei_contig7400.1.1 vs. uniprot
Match: UPI0016804621 (magnesium chelatase subunit H n=1 Tax=Cyanobacterium aponinum TaxID=379064 RepID=UPI0016804621)

HSP 1 Score: 140 bits (353), Expect = 1.190e-36
Identity = 61/88 (69.32%), Postives = 76/88 (86.36%), Query Frame = 1 
Query:   13 YDVGDIPSTPMDLMQSILNDDKARFDSPDMNVAYRMPVSEYEELTPYAKDLEENWGAAPGHLNSDGQNLLVFGRRFGNVFIGVQPTFG 276
            YDV D+P TP +LMQ +++D +A++ SP++N+AYRM V EYE LTPY+K LEENWGA PGHLNSDGQNLL++G+ FGNVFIGVQPTFG
Sbjct:  492 YDVQDVPDTPDELMQLVIHDAQAQYSSPELNIAYRMSVEEYERLTPYSKKLEENWGAPPGHLNSDGQNLLIYGKHFGNVFIGVQPTFG 579
[Close]
BLAST of mRNA_P-wetherbeei_contig7400.1.1 vs. uniprot
Match: A0A0G4GDA4_VITBC (Magnesium chelatase n=2 Tax=Vitrella brassicaformis TaxID=1169539 RepID=A0A0G4GDA4_VITBC)

HSP 1 Score: 140 bits (353), Expect = 1.190e-36
Identity = 62/88 (70.45%), Postives = 78/88 (88.64%), Query Frame = 1 
Query:   13 YDVGDIPSTPMDLMQSILNDDKARFDSPDMNVAYRMPVSEYEELTPYAKDLEENWGAAPGHLNSDGQNLLVFGRRFGNVFIGVQPTFG 276
            YD+G+IP +P  LM ++L+D +A++DSP +NVAYRMPV EYE+LTPY +DLEE WG APG+LNSDGQN+LVFG++FGNVFIGVQPTFG
Sbjct:  511 YDMGEIPESPEALMDAVLHDKEAKYDSPSLNVAYRMPVDEYEKLTPYHRDLEEAWGKAPGNLNSDGQNMLVFGKQFGNVFIGVQPTFG 598
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BLAST of mRNA_P-wetherbeei_contig7400.1.1 vs. uniprot
Match: A0A7S2C6I2_9STRA (Hypothetical protein n=2 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2C6I2_9STRA)

HSP 1 Score: 139 bits (351), Expect = 2.200e-36
Identity = 61/88 (69.32%), Postives = 75/88 (85.23%), Query Frame = 1 
Query:   13 YDVGDIPSTPMDLMQSILNDDKARFDSPDMNVAYRMPVSEYEELTPYAKDLEENWGAAPGHLNSDGQNLLVFGRRFGNVFIGVQPTFG 276
            YDVG+IP T  +++  +LND +A+FDSP++NV YRMP+ EYEEL PY KDLEENWG APG LN+DGQ++LVFG+ FGNVFIGVQPTFG
Sbjct:  157 YDVGEIPETSKEIVDMVLNDAEAKFDSPNLNVEYRMPIKEYEELCPYVKDLEENWGPAPGQLNTDGQDMLVFGKTFGNVFIGVQPTFG 244
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig7400.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835YVC9_9STRA1.670e-4179.12Magnesium chelatase n=2 Tax=Tribonema minus TaxID=... [more]
A0A6U3YD35_9STRA2.860e-3873.86Magnesium chelatase n=1 Tax=Dictyocha speculum Tax... [more]
A0A7R9YAB0_9STRA7.230e-3876.40Magnesium chelatase (Fragment) n=1 Tax=Pinguiococc... [more]
D7FW04_ECTSI1.850e-3777.27Magnesium chelatase n=2 Tax=Ectocarpus TaxID=2879 ... [more]
K9YZA4_CYAAP4.700e-3770.45Magnesium chelatase n=3 Tax=Cyanobacterium TaxID=1... [more]
A0A7S2K5K2_9STRA7.550e-3767.05Hypothetical protein (Fragment) n=1 Tax=Leptocylin... [more]
A0A3M0Y4F0_9CYAN8.750e-3769.32Magnesium chelatase n=1 Tax=Cyanobacteria bacteriu... [more]
UPI00168046211.190e-3669.32magnesium chelatase subunit H n=1 Tax=Cyanobacteri... [more]
A0A0G4GDA4_VITBC1.190e-3670.45Magnesium chelatase n=2 Tax=Vitrella brassicaformi... [more]
A0A7S2C6I2_9STRA2.200e-3669.32Hypothetical protein n=2 Tax=Florenciella parvula ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig7400contigP-wetherbeei_contig7400:8..541 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D7FW04
Preferred nameCHLH
PFAMsCobN-Mg_chel,DUF3479
Model size291
Max annot lvl2759|Eukaryota
KEGG rclassRC01012
KEGG koko:K03403
KEGG ReactionR03877
KEGG Pathwayko00860,ko01100,ko01110,map00860,map01100,map01110
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0009507,GO:0009526,GO:0009528,GO:0009532,GO:0009536,GO:0009570,GO:0009706,GO:0009941,GO:0010007,GO:0016020,GO:0016851,GO:0016874,GO:0019866,GO:0031090,GO:0031967,GO:0031969,GO:0031975,GO:0032991,GO:0042170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044444,GO:0044446,GO:0044464,GO:0051002,GO:0051003,GO:1902494
Exons2
Evalue3.04e-38
EggNOG OGsCOG1429@1|root,2QT3B@2759|Eukaryota
EC6.6.1.1
Descriptionligase activity, forming nitrogen-metal bonds
Cds size291
COG categoryH
BRITEko00000,ko00001,ko01000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186978.9845514-CDS-P-wetherbeei_contig7400:7..1661683186978.9845514-CDS-P-wetherbeei_contig7400:7..166Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig7400 8..166 +
1683186979.0026293-CDS-P-wetherbeei_contig7400:409..5411683186979.0026293-CDS-P-wetherbeei_contig7400:409..541Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig7400 410..541 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig7400.1.1prot_P-wetherbeei_contig7400.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig7400 8..541 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig7400.1.1

>prot_P-wetherbeei_contig7400.1.1 ID=prot_P-wetherbeei_contig7400.1.1|Name=mRNA_P-wetherbeei_contig7400.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=97bp
MATRYDVGDIPSTPMDLMQSILNDDKARFDSPDMNVAYRMPVSEYEELTP
YAKDLEENWGAAPGHLNSDGQNLLVFGRRFGNVFIGVQPTFGQVNV*
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mRNA from alignment at P-wetherbeei_contig7400:8..541+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig7400.1.1 ID=mRNA_P-wetherbeei_contig7400.1.1|Name=mRNA_P-wetherbeei_contig7400.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=534bp|location=Sequence derived from alignment at P-wetherbeei_contig7400:8..541+ (Phaeothamnion wetherbeei SAG_119_79)
ATGGCTACCAGGTACGACGTGGGCGACATTCCGTCGACGCCGATGGACTT
GATGCAGTCCATCCTCAACGACGACAAGGCGCGCTTCGACTCGCCTGACA
TGAACGTCGCCTACCGCATGCCGGTCTCCGAGTACGAGGAGCTCACGCCC
TATGCTAAGGTAATGCTCGGAAGAAAAGAGAGAACAGAAAAGAAAAAGAA
GAAGACGCGAAGAATTAAGAGGAAAAACTGGACGTTCCAGTGTCTCGGTA
ATGCGTTAGTTGATTCATTATTCAGCGGGGCGGCCGCCGAATACTTGTTG
TCCAGGGTAATTGCGGCGGCCCGTCGTGGCAACGGGACTTTTAGCTTGGT
ATAGCAGCTCGTTAAACTGCCCGTAAACTGCTCTCGTAACGGCGTCCTGC
AGGACCTAGAGGAGAACTGGGGCGCAGCGCCGGGCCACCTCAACTCGGAC
GGGCAGAATCTTCTCGTCTTCGGCCGCCGCTTCGGCAACGTCTTCATCGG
CGTGCAGCCCACCTTCGGGCAAGTCAATGTGTAG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig7400:8..541+

>mRNA_P-wetherbeei_contig7400.1.1 ID=mRNA_P-wetherbeei_contig7400.1.1|Name=mRNA_P-wetherbeei_contig7400.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=291bp|location=Sequence derived from alignment at P-wetherbeei_contig7400:8..541+ (Phaeothamnion wetherbeei SAG_119_79)
ATGGCTACCAGGTACGACGTGGGCGACATTCCGTCGACGCCGATGGACTT
GATGCAGTCCATCCTCAACGACGACAAGGCGCGCTTCGACTCGCCTGACA
TGAACGTCGCCTACCGCATGCCGGTCTCCGAGTACGAGGAGCTCACGCCC
TATGCTAAGGACCTAGAGGAGAACTGGGGCGCAGCGCCGGGCCACCTCAA
CTCGGACGGGCAGAATCTTCTCGTCTTCGGCCGCCGCTTCGGCAACGTCT
TCATCGGCGTGCAGCCCACCTTCGGGCAAGTCAATGTGTAG
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