mRNA_P-wetherbeei_contig7399.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig7399.2.1
Unique NamemRNA_P-wetherbeei_contig7399.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig7399.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig7399contigP-wetherbeei_contig7399:2239..2882 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size384
Hectar predicted targeting categoryother localisation
Exons2
Cds size384
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186978.3992777-CDS-P-wetherbeei_contig7399:2238..23791683186978.3992777-CDS-P-wetherbeei_contig7399:2238..2379Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig7399 2239..2379 +
1683186978.4117367-CDS-P-wetherbeei_contig7399:2639..28821683186978.4117367-CDS-P-wetherbeei_contig7399:2639..2882Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig7399 2640..2882 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig7399.2.1prot_P-wetherbeei_contig7399.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig7399 2239..2882 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig7399.2.1

>prot_P-wetherbeei_contig7399.2.1 ID=prot_P-wetherbeei_contig7399.2.1|Name=mRNA_P-wetherbeei_contig7399.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=128bp
LIDLGDRFHEASALLSQAMLIYEKAFGYSSDEVARDLSDLALALCLQGRY
DEAEPLLRRALRIDRARLGPRHPDVLADLSNLAVLLGERGRLHEAESLLR
RCVADAEALLPADSTQLALWRGNLARVL
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mRNA from alignment at P-wetherbeei_contig7399:2239..2882+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig7399.2.1 ID=mRNA_P-wetherbeei_contig7399.2.1|Name=mRNA_P-wetherbeei_contig7399.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=644bp|location=Sequence derived from alignment at P-wetherbeei_contig7399:2239..2882+ (Phaeothamnion wetherbeei SAG_119_79)
CTGATCGACCTCGGCGACCGCTTTCACGAGGCGAGCGCGCTGCTGTCTCA
GGCGATGCTCATCTATGAGAAAGCGTTCGGGTATAGCTCCGACGAGGTGG
CCCGGGATCTGAGCGACCTGGCGCTAGCGCTCTGCCTGCAGGTGAGAAAA
TGGCCGATGGGATGGAACCAGTAGGAGGCTGCAAGTCTGCCGGAAGGTAT
AGCCGGTGGGAGACAGTGTTTTGGCGCTTTTCGATCATAGTCCAAGGGGA
AGGCGATGGAATTAGGTAATAGCCAATGCCGTCCTCGAAATGGGACTGAA
TTAAAACCTGTTTATCCAGCCAGTGTATCAACCTTATATCCCTTCCCTGT
CTTCTGCCACCGCCCGATGGCAATTCTGCCCCTCGTTAAAAAAATCCGCA
GGGGCGCTACGACGAGGCCGAACCGCTGCTGCGCCGCGCCCTCCGCATCG
ATCGCGCCCGCCTCGGCCCGCGACACCCCGACGTCCTCGCCGACCTCTCC
AACTTGGCGGTGCTCCTCGGGGAGCGCGGTCGGCTGCACGAGGCGGAATC
GCTGCTGCGGCGGTGCGTCGCCGATGCCGAGGCGCTGCTCCCCGCCGACA
GCACGCAGCTGGCGCTCTGGCGCGGCAACCTTGCCCGCGTGCTC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig7399:2239..2882+

>mRNA_P-wetherbeei_contig7399.2.1 ID=mRNA_P-wetherbeei_contig7399.2.1|Name=mRNA_P-wetherbeei_contig7399.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=384bp|location=Sequence derived from alignment at P-wetherbeei_contig7399:2239..2882+ (Phaeothamnion wetherbeei SAG_119_79)
CTGATCGACCTCGGCGACCGCTTTCACGAGGCGAGCGCGCTGCTGTCTCA
GGCGATGCTCATCTATGAGAAAGCGTTCGGGTATAGCTCCGACGAGGTGG
CCCGGGATCTGAGCGACCTGGCGCTAGCGCTCTGCCTGCAGGGGCGCTAC
GACGAGGCCGAACCGCTGCTGCGCCGCGCCCTCCGCATCGATCGCGCCCG
CCTCGGCCCGCGACACCCCGACGTCCTCGCCGACCTCTCCAACTTGGCGG
TGCTCCTCGGGGAGCGCGGTCGGCTGCACGAGGCGGAATCGCTGCTGCGG
CGGTGCGTCGCCGATGCCGAGGCGCTGCTCCCCGCCGACAGCACGCAGCT
GGCGCTCTGGCGCGGCAACCTTGCCCGCGTGCTC
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