mRNA_P-wetherbeei_contig7385.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig7385.1.1
Unique NamemRNA_P-wetherbeei_contig7385.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig7385.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig7385contigP-wetherbeei_contig7385:3..1925 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size1514
Hectar predicted targeting categoryother localisation
Exons3
Cds size1512
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186977.8729508-CDS-P-wetherbeei_contig7385:2..881683186977.8729508-CDS-P-wetherbeei_contig7385:2..88Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig7385 3..88 +
1683186977.881514-CDS-P-wetherbeei_contig7385:285..5861683186977.881514-CDS-P-wetherbeei_contig7385:285..586Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig7385 286..586 +
1683186977.8897185-CDS-P-wetherbeei_contig7385:799..19241683186977.8897185-CDS-P-wetherbeei_contig7385:799..1924Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig7385 800..1924 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig7385.1.1prot_P-wetherbeei_contig7385.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig7385 3..1924 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig7385.1.1

>prot_P-wetherbeei_contig7385.1.1 ID=prot_P-wetherbeei_contig7385.1.1|Name=mRNA_P-wetherbeei_contig7385.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=504bp
SYSARRSGYVESRDPVPFPEAPMRMTSQRTYGSGKLGRAKSDVAAASADD
RSSARFGHSEGIASYSPVRERARDCPAATATPAPRRRKLGSLQSPLRVGH
ETSLPDTGAPSSSSARGRGTETTSWRRNKVKVGRDDMDNGCGRGGGGGGG
GIGVGSVPQSDAAVAEGWKKPVPADGRGRKGLPKAAGRTARRGRRVASSR
GSGNSSSSSNKSTHSSSDSGDSCSDDKKGRANACRPARMPGEAAPSSASL
FGLDDGVQEMFVGEKRRRQNRLQSEARGGGAGVGGGDDVRFCHGAAPLRG
AAAAHGFSLRSALGRPGAKEKSHAGIAGSPSVTAMGLVRGRRPTLQRLRR
RNGDSCCDSPSDECNWSRDGESADGKSADGKSADGKSADCKSVDGKSADG
AAGREGADSPPPSRDEHVDPCAGGRSRSGTGAGFVSGAEEASDISIETPS
PERRAPRTTRDGSTSQAASRPRPARPPAAAKQVQLVSLSSRPPTPRQATG
SAGC
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mRNA from alignment at P-wetherbeei_contig7385:3..1925+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig7385.1.1 ID=mRNA_P-wetherbeei_contig7385.1.1|Name=mRNA_P-wetherbeei_contig7385.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1923bp|location=Sequence derived from alignment at P-wetherbeei_contig7385:3..1925+ (Phaeothamnion wetherbeei SAG_119_79)
AGCTACAGCGCGAGGCGCTCTGGGTATGTAGAGAGCCGAGACCCCGTTCC
ATTTCCGGAAGCCCCTATGCGCATGACGTCGCAACGGTGAGTTTGTTGCT
GCGTTGCGTTGATCTCTTGGTCGAGCTCGCTGGCGTAGAAATCTCACTGC
CGCTTGAGTGTTTGTGCAGCTGGTGGCATTTTCCACCTCTAGCTCGTGTT
CACGTTTGCTCGAGGTCTCCGCCCGCCAAACAGGTCTTTTAAAGCGTGTG
TCTTCTTCCCAAACCCGCTCATCGTTACGTCAGGACGTACGGGAGCGGCA
AGCTTGGAAGAGCGAAGAGTGATGTCGCTGCAGCATCGGCCGACGACCGG
AGCTCAGCTCGTTTCGGTCATTCGGAGGGAATCGCCTCCTACTCTCCTGT
TCGGGAGCGGGCTCGTGACTGTCCCGCCGCCACGGCAACGCCAGCGCCAC
GGCGCAGGAAGCTCGGGTCGCTGCAGAGTCCGCTACGCGTGGGCCATGAG
ACCTCGCTGCCAGACACGGGCGCCCCGTCGTCCAGCTCGGCACGAGGCCG
TGGCACAGAGACGACCTCTTGGCGGCGGAACAAGGTGCGTGCGTTTGGCA
AGATCCCCGCTTATTGGCGGCGCGAGGTGGCAGGCGGCTGTGAAAAAGAG
GGAAGGTACATTATTCTTCAACCGTTCCTCTTATCTTCGATAATGCCAGG
GTGGCCGTTGGTGCGTTGGTTCTTTGCCCAAATCGAAAGTTTGCTGATTG
CCGAGTTTCACTCCAATAAATCGCCGGATCCCTCCGCTCTTGTGCAGGTC
AAGGTCGGTAGGGATGACATGGACAACGGCTGCGGCCGCGGCGGTGGCGG
CGGCGGCGGCGGTATCGGTGTTGGCTCCGTCCCTCAATCTGATGCTGCCG
TGGCAGAGGGCTGGAAAAAGCCAGTTCCGGCGGATGGGCGAGGCCGCAAA
GGTCTGCCCAAGGCGGCCGGTAGAACCGCCCGCCGTGGCCGTCGCGTTGC
AAGCAGCAGAGGAAGCGGCAACAGCAGCAGCAGTAGCAACAAGAGCACAC
ACAGCAGCAGCGACAGCGGCGACAGCTGCAGTGACGACAAAAAGGGGCGC
GCTAACGCTTGCCGGCCCGCCCGCATGCCTGGCGAGGCTGCGCCTTCCTC
GGCCTCGTTGTTTGGCCTGGATGATGGTGTCCAGGAAATGTTCGTGGGCG
AGAAGCGGAGACGGCAGAATCGGCTGCAAAGTGAGGCTCGTGGCGGCGGG
GCGGGCGTTGGGGGAGGCGATGACGTTCGATTCTGCCATGGTGCAGCTCC
GCTGCGCGGTGCCGCCGCCGCACATGGCTTTTCTTTGCGGTCGGCCTTGG
GCCGCCCTGGCGCCAAGGAGAAATCCCATGCTGGCATCGCGGGTTCACCG
AGCGTTACGGCGATGGGCCTGGTACGCGGCCGGCGGCCGACGCTGCAGCG
TCTACGGCGCCGCAATGGCGACAGCTGCTGCGATTCCCCTTCGGACGAAT
GCAACTGGAGCCGCGACGGCGAAAGCGCCGACGGCAAAAGCGCCGACGGC
AAAAGCGCCGACGGCAAAAGCGCCGACTGCAAAAGCGTCGACGGCAAAAG
CGCGGACGGCGCAGCCGGCCGTGAAGGAGCGGATTCGCCGCCCCCGTCCC
GCGACGAGCACGTAGACCCGTGCGCCGGCGGCAGAAGCCGGAGTGGAACG
GGTGCTGGCTTCGTCAGCGGTGCCGAGGAGGCTTCGGACATCAGCATCGA
GACCCCAAGCCCTGAGCGGCGTGCACCACGGACCACGCGAGACGGCTCGA
CGTCCCAAGCGGCCTCGCGGCCCCGACCGGCGCGACCGCCAGCGGCCGCC
AAGCAGGTCCAGCTGGTGTCGCTGTCCTCCAGGCCCCCGACACCACGCCA
AGCGACAGGCAGCGCCGGATGCC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig7385:3..1925+

>mRNA_P-wetherbeei_contig7385.1.1 ID=mRNA_P-wetherbeei_contig7385.1.1|Name=mRNA_P-wetherbeei_contig7385.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=1512bp|location=Sequence derived from alignment at P-wetherbeei_contig7385:3..1925+ (Phaeothamnion wetherbeei SAG_119_79)
AGCTACAGCGCGAGGCGCTCTGGGTATGTAGAGAGCCGAGACCCCGTTCC
ATTTCCGGAAGCCCCTATGCGCATGACGTCGCAACGGACGTACGGGAGCG
GCAAGCTTGGAAGAGCGAAGAGTGATGTCGCTGCAGCATCGGCCGACGAC
CGGAGCTCAGCTCGTTTCGGTCATTCGGAGGGAATCGCCTCCTACTCTCC
TGTTCGGGAGCGGGCTCGTGACTGTCCCGCCGCCACGGCAACGCCAGCGC
CACGGCGCAGGAAGCTCGGGTCGCTGCAGAGTCCGCTACGCGTGGGCCAT
GAGACCTCGCTGCCAGACACGGGCGCCCCGTCGTCCAGCTCGGCACGAGG
CCGTGGCACAGAGACGACCTCTTGGCGGCGGAACAAGGTCAAGGTCGGTA
GGGATGACATGGACAACGGCTGCGGCCGCGGCGGTGGCGGCGGCGGCGGC
GGTATCGGTGTTGGCTCCGTCCCTCAATCTGATGCTGCCGTGGCAGAGGG
CTGGAAAAAGCCAGTTCCGGCGGATGGGCGAGGCCGCAAAGGTCTGCCCA
AGGCGGCCGGTAGAACCGCCCGCCGTGGCCGTCGCGTTGCAAGCAGCAGA
GGAAGCGGCAACAGCAGCAGCAGTAGCAACAAGAGCACACACAGCAGCAG
CGACAGCGGCGACAGCTGCAGTGACGACAAAAAGGGGCGCGCTAACGCTT
GCCGGCCCGCCCGCATGCCTGGCGAGGCTGCGCCTTCCTCGGCCTCGTTG
TTTGGCCTGGATGATGGTGTCCAGGAAATGTTCGTGGGCGAGAAGCGGAG
ACGGCAGAATCGGCTGCAAAGTGAGGCTCGTGGCGGCGGGGCGGGCGTTG
GGGGAGGCGATGACGTTCGATTCTGCCATGGTGCAGCTCCGCTGCGCGGT
GCCGCCGCCGCACATGGCTTTTCTTTGCGGTCGGCCTTGGGCCGCCCTGG
CGCCAAGGAGAAATCCCATGCTGGCATCGCGGGTTCACCGAGCGTTACGG
CGATGGGCCTGGTACGCGGCCGGCGGCCGACGCTGCAGCGTCTACGGCGC
CGCAATGGCGACAGCTGCTGCGATTCCCCTTCGGACGAATGCAACTGGAG
CCGCGACGGCGAAAGCGCCGACGGCAAAAGCGCCGACGGCAAAAGCGCCG
ACGGCAAAAGCGCCGACTGCAAAAGCGTCGACGGCAAAAGCGCGGACGGC
GCAGCCGGCCGTGAAGGAGCGGATTCGCCGCCCCCGTCCCGCGACGAGCA
CGTAGACCCGTGCGCCGGCGGCAGAAGCCGGAGTGGAACGGGTGCTGGCT
TCGTCAGCGGTGCCGAGGAGGCTTCGGACATCAGCATCGAGACCCCAAGC
CCTGAGCGGCGTGCACCACGGACCACGCGAGACGGCTCGACGTCCCAAGC
GGCCTCGCGGCCCCGACCGGCGCGACCGCCAGCGGCCGCCAAGCAGGTCC
AGCTGGTGTCGCTGTCCTCCAGGCCCCCGACACCACGCCAAGCGACAGGC
AGCGCCGGATGC
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