mRNA_P-wetherbeei_contig7376.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig7376.1.1
Unique NamemRNA_P-wetherbeei_contig7376.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig7376.1.1 vs. uniprot
Match: A0A7S3Y425_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y425_HETAK)

HSP 1 Score: 60.8 bits (146), Expect = 1.010e-6
Identity = 36/96 (37.50%), Postives = 56/96 (58.33%), Query Frame = 1 
Query: 1393 WTREQNREHSRLSRERRRQREEALAREVNHLRVFRSLVDGFPDMISLHGDASDDPPVTYANGAFEVQLGVNPAALVGRPLTCVVHPDDMEMLQQAI 1680
            W + ++RE+S+  R++++  E  L  E+  LR FRSLV+  PDM+SL      + P  +A+ A++ Q+ +  A LVGRP   +VHP D   L   I
Sbjct:   65 WHKARHREYSKAWRKKKKAEENNLKEEIEQLRKFRSLVEDAPDMLSLVA-VEPNFPFVFASAAYDRQVQIAGADLVGRPFCSIVHPMDQAGLTHTI 159
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig7376.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A7S3Y425_HETAK1.010e-637.50Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig7376contigP-wetherbeei_contig7376:535..2928 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog2880.D8LJL9
PFAMsPAS_3
Model size1746
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons4
Evalue6.47e-06
EggNOG OGs2CNC0@1|root,2QV4B@2759|Eukaryota
DescriptionPAS domain
Cds size1407
COG categoryS
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186977.3675294-CDS-P-wetherbeei_contig7376:534..6551683186977.3675294-CDS-P-wetherbeei_contig7376:534..655Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig7376 535..655 -
1683186977.3775196-CDS-P-wetherbeei_contig7376:885..18471683186977.3775196-CDS-P-wetherbeei_contig7376:885..1847Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig7376 886..1847 -
1683186977.3859868-CDS-P-wetherbeei_contig7376:2057..21801683186977.3859868-CDS-P-wetherbeei_contig7376:2057..2180Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig7376 2058..2180 -
1683186977.3940284-CDS-P-wetherbeei_contig7376:2388..25891683186977.3940284-CDS-P-wetherbeei_contig7376:2388..2589Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig7376 2389..2589 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186977.4018807-UTR-P-wetherbeei_contig7376:2589..29281683186977.4018807-UTR-P-wetherbeei_contig7376:2589..2928Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig7376 2590..2928 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig7376.1.1prot_P-wetherbeei_contig7376.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig7376 535..2589 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig7376.1.1

>prot_P-wetherbeei_contig7376.1.1 ID=prot_P-wetherbeei_contig7376.1.1|Name=mRNA_P-wetherbeei_contig7376.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=469bp
MEMTVKPQARGEPPSAPGDTEGGASASSSRGDAERDGKAQQLSLPGGGGR
QGYGEVADVIAQRDSQTVAWDKEGYSAAAKAAAAALAVARAKGRDAEHGS
AMGQNPQEELRHRKQDWEQRQVYERQQHWQSQQDWQRQERWQQQHPAQPA
LPQLPHWAPFADHSWGRTNAMHSPDQADDGAGRDGNGAPSAGGDGAPSAR
GGSAPSAGGGGVPEAGNGCAGGSGGPGDDGRDSGGRSGGGGDARRSTPSS
ESELADDVKPELVAAAMLAARQQDSVENGGTDLDMDPSPSPPTSLSPSDD
SESESTHTGTPPLQSSSCLRLPPGSPPSPPPPSPKRHRKNMAGMTDAERR
SWTREQNREHSRLSRERRRQREEALAREVNHLRVFRSLVDGFPDMISLHG
DASDDPPVTYANGAFEVQLGVNPAALVGRPLTCVVHPDDMEMLQQAIHSV
RQGNADAQISLRLQRWVPT
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mRNA from alignment at P-wetherbeei_contig7376:535..2928-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig7376.1.1 ID=mRNA_P-wetherbeei_contig7376.1.1|Name=mRNA_P-wetherbeei_contig7376.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=2394bp|location=Sequence derived from alignment at P-wetherbeei_contig7376:535..2928- (Phaeothamnion wetherbeei SAG_119_79)
GAATTTCTTTCGCATGGAAGCAAAAAAAAGAGGTTCTGGAAGAATGCTAT
CGTAGTTGTCACCTAGCGGCAGCGGAGGCGTGACCCTTCACGAAAGGCAA
ATCGGCCCTTAGGATACTGCCTCTCCCTCGCAGATTTGGTGGCGAAAGAA
TCACAGAAACGGAATTCCTTAGACCACAGGACAATTGAAAGTAGCCGGTT
GGGTGAGGAGATGGTGCATCCTCCCATGTCGCCTATGTCAAGAGCACAAG
GGCGGCCGAACCGTGTTCAGGCACATCGAACTTCGCTGAGCATTCCCACG
GCTGGCATGGAAAACGAAGACTAAGCACACGCCGAAGGCATGGAGATGAC
GGTGAAACCGCAAGCGCGTGGCGAACCACCATCCGCTCCAGGAGATACCG
AGGGAGGAGCAAGTGCAAGTTCAAGCCGTGGAGATGCGGAGAGAGACGGG
AAGGCGCAGCAGCTTAGCCTTCCTGGTGGTGGCGGCCGACAAGGCTATGG
CGAAGTTGCCGACGTGATTGCGCAAAGGGATTCGCAGACGGTACGCCGCC
TTTCGCAAAGAAAGGACGTTTTTCCACATTTACATTTTTTGGCCTTGCAT
TCCACAACCAACCCATTTCTGCCGCCATTGTTGGTGTGTATAAACATCTT
TCCCTCGTCCAGCCTGGCGCTTGCAATTTGACGTGTAACTCCGCCCCGCC
TTTTTTGTGTACTGTTCGTGCCTCCGTTGTGTAAACTCTTTCTCACAGGT
AGCGTGGGATAAAGAGGGGTATAGCGCAGCAGCGAAGGCGGCGGCAGCGG
CGCTGGCGGTTGCGAGAGCAAAAGGGCGAGACGCCGAGCATGGAAGCGCC
ATGGGACAGAATCCACAAGAGGTAGGCATGAATGTCTTTCGCGCTCGCCA
TCCTACCTAATTGCGACACCCCGGCCGGCCACAATTCGATTTGATTGTTC
CGAAAAACGTATTTCGCAACAGGCGGATTTTGCGGTCGATGCGAAGAACG
TCAGCTGAAATCGTTCCCTTTGTCGCCGATTTTAATCGCATGCTGGTATG
GGCATCTTGCCCGGCCCTCGGGGGGCGGCAGGAGCTGCGGCACCGGAAGC
AGGACTGGGAACAGCGACAGGTCTACGAGCGGCAGCAGCACTGGCAGTCG
CAGCAGGACTGGCAGCGACAGGAGCGCTGGCAGCAGCAGCACCCTGCGCA
ACCGGCCCTGCCACAGCTCCCGCACTGGGCCCCCTTCGCGGACCACAGCT
GGGGCCGCACAAACGCCATGCACAGCCCGGACCAGGCCGACGATGGCGCC
GGCCGTGACGGCAATGGTGCTCCCAGTGCTGGCGGCGATGGGGCTCCCAG
TGCTCGCGGCGGCAGCGCTCCCAGTGCTGGCGGCGGCGGCGTTCCGGAAG
CTGGCAACGGCTGTGCCGGCGGCAGCGGTGGGCCGGGCGATGATGGCCGC
GATTCCGGCGGCCGCAGCGGCGGCGGCGGCGATGCCAGGCGGAGCACGCC
GTCCTCGGAATCGGAGTTGGCGGACGACGTGAAGCCAGAGCTGGTGGCGG
CCGCGATGCTTGCCGCCCGGCAGCAGGACAGCGTCGAGAATGGCGGGACG
GATCTGGACATGGACCCGTCACCGTCGCCGCCCACCTCGTTGTCGCCGAG
CGACGATTCCGAATCGGAGTCCACGCACACGGGGACGCCGCCGCTGCAGT
CGTCCTCATGCCTGAGGCTGCCGCCCGGTTCACCGCCGTCGCCGCCGCCG
CCGAGCCCGAAGCGGCACCGCAAGAACATGGCGGGCATGACGGACGCTGA
GCGGCGCTCGTGGACGCGCGAGCAGAACCGTGAGCACTCGCGGCTGTCGC
GGGAGCGGCGCCGGCAGCGGGAGGAGGCTCTCGCCAGGGAGGTGAACCAC
CTGCGGGTGTTCCGCAGCCTCGTGGACGGCTTTCCTGACATGATTTCGCT
GCACGGCGACGCCTCAGACGACCCACCCGTAACGTATGCCAACGGTGCCT
TCGAGGTGCAGCTCGGGGTGAATCCCGCCGCCCTGGTCGGCAGGTGAGCA
ATGGGAGGGAGGACGCACGGGAATGGCGGCGGCTAAACCACTTTTAATAT
GGATTCACGGAGGGAATGAATCGAAGAGATGGCAGACGGCGGGGTGGACG
CTGTAGTCTCCTGGCTGTGGCCTGCAGCAAGCCCTCACCATGTTAAGGAA
AACGAAGCGCCGTTGCTTCATGCTCTCTGCCACCCGCTTCGCTCTTCTCC
CTGCTGACCTTGCGATGCGGCAGACCGCTGACGTGCGTGGTGCATCCCGA
CGACATGGAGATGCTGCAGCAGGCGATCCACTCGGTACGCCAGGGAAATG
CCGACGCGCAGATCAGTCTCCGTCTTCAGCGATGGGTCCCGACA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig7376:535..2928-

>mRNA_P-wetherbeei_contig7376.1.1 ID=mRNA_P-wetherbeei_contig7376.1.1|Name=mRNA_P-wetherbeei_contig7376.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=1407bp|location=Sequence derived from alignment at P-wetherbeei_contig7376:535..2928- (Phaeothamnion wetherbeei SAG_119_79)
ATGGAGATGACGGTGAAACCGCAAGCGCGTGGCGAACCACCATCCGCTCC
AGGAGATACCGAGGGAGGAGCAAGTGCAAGTTCAAGCCGTGGAGATGCGG
AGAGAGACGGGAAGGCGCAGCAGCTTAGCCTTCCTGGTGGTGGCGGCCGA
CAAGGCTATGGCGAAGTTGCCGACGTGATTGCGCAAAGGGATTCGCAGAC
GGTAGCGTGGGATAAAGAGGGGTATAGCGCAGCAGCGAAGGCGGCGGCAG
CGGCGCTGGCGGTTGCGAGAGCAAAAGGGCGAGACGCCGAGCATGGAAGC
GCCATGGGACAGAATCCACAAGAGGAGCTGCGGCACCGGAAGCAGGACTG
GGAACAGCGACAGGTCTACGAGCGGCAGCAGCACTGGCAGTCGCAGCAGG
ACTGGCAGCGACAGGAGCGCTGGCAGCAGCAGCACCCTGCGCAACCGGCC
CTGCCACAGCTCCCGCACTGGGCCCCCTTCGCGGACCACAGCTGGGGCCG
CACAAACGCCATGCACAGCCCGGACCAGGCCGACGATGGCGCCGGCCGTG
ACGGCAATGGTGCTCCCAGTGCTGGCGGCGATGGGGCTCCCAGTGCTCGC
GGCGGCAGCGCTCCCAGTGCTGGCGGCGGCGGCGTTCCGGAAGCTGGCAA
CGGCTGTGCCGGCGGCAGCGGTGGGCCGGGCGATGATGGCCGCGATTCCG
GCGGCCGCAGCGGCGGCGGCGGCGATGCCAGGCGGAGCACGCCGTCCTCG
GAATCGGAGTTGGCGGACGACGTGAAGCCAGAGCTGGTGGCGGCCGCGAT
GCTTGCCGCCCGGCAGCAGGACAGCGTCGAGAATGGCGGGACGGATCTGG
ACATGGACCCGTCACCGTCGCCGCCCACCTCGTTGTCGCCGAGCGACGAT
TCCGAATCGGAGTCCACGCACACGGGGACGCCGCCGCTGCAGTCGTCCTC
ATGCCTGAGGCTGCCGCCCGGTTCACCGCCGTCGCCGCCGCCGCCGAGCC
CGAAGCGGCACCGCAAGAACATGGCGGGCATGACGGACGCTGAGCGGCGC
TCGTGGACGCGCGAGCAGAACCGTGAGCACTCGCGGCTGTCGCGGGAGCG
GCGCCGGCAGCGGGAGGAGGCTCTCGCCAGGGAGGTGAACCACCTGCGGG
TGTTCCGCAGCCTCGTGGACGGCTTTCCTGACATGATTTCGCTGCACGGC
GACGCCTCAGACGACCCACCCGTAACGTATGCCAACGGTGCCTTCGAGGT
GCAGCTCGGGGTGAATCCCGCCGCCCTGGTCGGCAGACCGCTGACGTGCG
TGGTGCATCCCGACGACATGGAGATGCTGCAGCAGGCGATCCACTCGGTA
CGCCAGGGAAATGCCGACGCGCAGATCAGTCTCCGTCTTCAGCGATGGGT
CCCGACA
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