mRNA_P-wetherbeei_contig7370.1.2 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig7370.1.2
Unique NamemRNA_P-wetherbeei_contig7370.1.2
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig7370.1.2 vs. uniprot
Match: D7FQR1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQR1_ECTSI)

HSP 1 Score: 178 bits (452), Expect = 3.880e-49
Identity = 92/170 (54.12%), Postives = 128/170 (75.29%), Query Frame = 1 
Query:  244 EYVTLSGTWVLNKHRSDTMEGFLRIMGVAELAIEAQLKSEADHETRNVIRLDLHRMIINKRSKINTLTEFYDLFKEKNTPARNGTRQTMVALKDRTRLDGIVVTTTMPTSQGTLHLVESRQLVDRGHAVYQELQVTNLATGGSNVTRRYWRRVPVTDEDEETLLRE-NLQ 750
            EY ++ G WVL   RS+TMEG+LR M VA+LAIEAQ+K+E DHE+RNV  ++  +++I+KR+KIN  T+ Y+L KEK T  R+G +  MV+L +   LDG+V+TT+MPT+QG +HLVE+RQL+D+GH   QEL ++NL TG   VT+R W RV VT  D+E++L+E NLQ
Sbjct:   20 EYNSIVGAWVLEVSRSETMEGYLRCMNVADLAIEAQMKAEQDHESRNVFAIEGTKLVIHKRTKINHFTQIYELDKEKITDGRSGPKHCMVSLPNPGCLDGLVLTTSMPTAQGQMHLVETRQLLDKGHVHAQELHLSNLTTGARCVTKRTWVRVAVTPVDQESVLQEMNLQ 189
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BLAST of mRNA_P-wetherbeei_contig7370.1.2 vs. uniprot
Match: A0A835ZG67_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZG67_9STRA)

HSP 1 Score: 178 bits (452), Expect = 4.400e-49
Identity = 93/169 (55.03%), Postives = 119/169 (70.41%), Query Frame = 1 
Query:  235 MEGEYVTLSGTWVLNKHRSDTMEGFLRIMGVAELAIEAQLKSEADHETRNVIRLDLHRMIINKRSKINTLTEFYDLFKEKNTPARNGTRQTMVALKDRTRLDGIVVTTTMPTSQGTLHLVESRQLVDRGHAVYQELQVTNLATGGSNVTRRYWRRVPVTDEDEETLLRE 741
            + GE+ +L+G+WVL+K RSD ME +L+ + VAELAIEAQ K EAD E+RNVI +D  +  I+KR+KIN LTE ++L KE+  PAR+GTR+TMV L+       I VTT MP S G LHL+E+R L+D+GH   QEL +TNLATG   +TRR W RVP T ED   L  E
Sbjct:    8 LHGEFTSLTGSWVLDKSRSDVMEPYLQCLNVAELAIEAQAKCEADSESRNVINIDGTQFAIHKRTKINALTEHFELGKEREMPARSGTRKTMVTLRKPGDYSAIDVTTAMPISTGALHLLETRTLMDKGHTCLQELHLTNLATGAKCLTRRVWVRVPTTHEDRAALEEE 176
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BLAST of mRNA_P-wetherbeei_contig7370.1.2 vs. uniprot
Match: A0A6H5JWZ5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWZ5_9PHAE)

HSP 1 Score: 150 bits (378), Expect = 3.980e-39
Identity = 78/145 (53.79%), Postives = 111/145 (76.55%), Query Frame = 1 
Query:  319 MGVAELAIEAQLKSEADHETRNVIRLDLHRMIINKRSKINTLTEFYDLFKEKNTPARNGTRQTMVALKDRTRLDGIVVTTTMPTSQGTLHLVESRQLVDRGHAVYQELQVTNLATGGSNVTRRYWRRVPVTDEDEETLLRE-NLQ 750
            M VA+LAIEAQ+K+E DHE+RNV  ++  +++I+KR+KIN  T+ Y+L KEK T  R+G +  MV+L++   LDG+V+TT+MPT+QG +HLVE+RQL+D+GH   QEL ++NL TG   VT+R W RV VT  D+E++L+E NLQ
Sbjct:    1 MNVADLAIEAQMKAEQDHESRNVFAIEGTKLVIHKRTKINHFTQIYELDKEKITDGRSGPKHCMVSLRNPGCLDGLVLTTSMPTAQGQMHLVETRQLLDKGHVHAQELHLSNLTTGARCVTKRTWVRVAVTPLDQESVLQEMNLQ 145
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BLAST of mRNA_P-wetherbeei_contig7370.1.2 vs. uniprot
Match: D7FJD1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJD1_ECTSI)

HSP 1 Score: 119 bits (299), Expect = 5.820e-28
Identity = 62/151 (41.06%), Postives = 94/151 (62.25%), Query Frame = 1 
Query:  253 TLSGTWVLNKHRSDTMEGFLRIMGVAELAIEAQLKSEADHETRNVIRLDLHRMIINKRSKINTLTEFYDLFKEKNTPARNGTRQTMVALKDRTRLDGIVVTTTMPTSQGTLHLVESRQLVDRGHAVYQELQVTNLATGGSNVTRRYWRRVP 705
            +L+G WVL+ +RSDT+E +LR MG  +  +EAQL  E    +RNV+ LD  R++++K + +N LTE Y+L +E+ TP+  G ++ + +L    R D + + T +PT      LVE+R+LV  G    QEL + NL TG  ++TRR W R P
Sbjct:    5 SLTGAWVLDVYRSDTLEAYLRCMGAPDRVVEAQLAGEQACPSRNVLVLDDSRLVVHKHTSVNNLTESYELDQERVTPSTYGEKRAIASLLQPGRHDALAIKTALPTDTSDFGLVETRRLVGDGSTHIQELLLRNLDTGAQSITRRTWVREP 155
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BLAST of mRNA_P-wetherbeei_contig7370.1.2 vs. uniprot
Match: A0A7S2K335_9STRA (Hypothetical protein n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2K335_9STRA)

HSP 1 Score: 84.0 bits (206), Expect = 4.400e-15
Identity = 57/159 (35.85%), Postives = 87/159 (54.72%), Query Frame = 1 
Query:  253 TLSGTWVLNKHRSD-TMEGFLRIMGVAELAIEAQLKSEADHETRNVIRLDLHRMIINKRSKINTLTEFYDLFKEKNTPARNGTRQTMVALKDRTRLDGIVVTTTMPTSQGTLHLVESRQLV--DRGHAVY-QELQVTNLATGGSNVTRRYWRRVPVTDE 717
            +L+G W L+K R + +M+G+L +MGV  +AIEA  K E D ETRN I L   ++ I K S++N L E + + +E       G  +  V   D   L  + +TT MPT  G   +V+ + LV  D G  V  Q+L + N+ TG +  T R++    +T+E
Sbjct:    8 SLNGVWRLDKSRGEPSMKGYLEVMGVTAMAIEAHEKGEKDVETRNNIELTGSKLRIKKTSRVNNLQEEFPIGQEIIKTLMGGGDRQKVTRVDSEGLHHVKITTQMPTMNGKAEVVDIKTLVTEDDGKTVLRQDLTIRNVDTGQTKTTERWFVPEALTEE 166
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BLAST of mRNA_P-wetherbeei_contig7370.1.2 vs. uniprot
Match: A0A7S0PHQ3_9STRA (Hypothetical protein n=1 Tax=Leptocylindrus aporus TaxID=1398097 RepID=A0A7S0PHQ3_9STRA)

HSP 1 Score: 77.8 bits (190), Expect = 7.700e-13
Identity = 59/160 (36.88%), Postives = 87/160 (54.37%), Query Frame = 1 
Query:  256 LSGTWVLNKHRSD-TMEGFLRIMGVAELAIEAQLKSEADHETRNVIRLDLHRMIINKRSKINTLTEFYDLFKEKNTPARNGTRQ--TMVALKDRTRLDGIVVTTTMPTSQGTLHLVESRQLV--DRGHA-VYQELQVTNLATGGSNVTRRYWRRVPVTDE 717
            L+G W L+K R + +M G+L +MGV  LAIEA  K E D +T + I L      + K S++N L E + L KE  T   +G RQ  T+V  ++ T    + + T MPT  G   + + + LV  D G   ++QEL + NL  G + VTRR++    +T E
Sbjct:   22 LNGVWKLDKTRGEPSMRGYLEVMGVDGLAIEAHEKGERDVDTLHHILLTGDTYRVKKTSRVNNLQEEFALGKETLTTLADGNRQKKTLVESENNTT---VRICTHMPTVNGAAEVTDVKTLVHEDNGRVCMHQELIIKNLNNGKTKVTRRWFTPSSLTPE 178
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig7370.1.2 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
D7FQR1_ECTSI3.880e-4954.12Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A835ZG67_9STRA4.400e-4955.03Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A6H5JWZ5_9PHAE3.980e-3953.79Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FJD1_ECTSI5.820e-2841.06Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A7S2K335_9STRA4.400e-1535.85Hypothetical protein n=1 Tax=Leptocylindrus danicu... [more]
A0A7S0PHQ3_9STRA7.700e-1336.88Hypothetical protein n=1 Tax=Leptocylindrus aporus... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig7370contigP-wetherbeei_contig7370:16..2215 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog35128.Thaps23170
Model size1796
Max annot lvl2836|Bacillariophyta
Hectar predicted targeting categoryother localisation
Exons3
Evalue4.37e-13
EggNOG OGs2CINE@1|root,2T7ND@2759|Eukaryota,2XG6G@2836|Bacillariophyta
Cds size582
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186977.0817435-UTR-P-wetherbeei_contig7370:15..10461683186977.0817435-UTR-P-wetherbeei_contig7370:15..1046Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig7370 16..1046 -
1683186977.1437001-UTR-P-wetherbeei_contig7370:2032..22151683186977.1437001-UTR-P-wetherbeei_contig7370:2032..2215Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig7370 2033..2215 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186977.1003616-CDS-P-wetherbeei_contig7370:1046..13071683186977.1003616-CDS-P-wetherbeei_contig7370:1046..1307Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig7370 1047..1307 -
1683186977.1238213-CDS-P-wetherbeei_contig7370:1588..16601683186977.1238213-CDS-P-wetherbeei_contig7370:1588..1660Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig7370 1589..1660 -
1683186977.1350312-CDS-P-wetherbeei_contig7370:1783..20321683186977.1350312-CDS-P-wetherbeei_contig7370:1783..2032Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig7370 1784..2032 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig7370.1.2prot_P-wetherbeei_contig7370.1.2Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig7370 1047..2032 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig7370.1.2

>prot_P-wetherbeei_contig7370.1.2 ID=prot_P-wetherbeei_contig7370.1.2|Name=mRNA_P-wetherbeei_contig7370.1.2|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=194bp
MRRAPPTNPVALPPAPAMEGEYVTLSGTWVLNKHRSDTMEGFLRIMGVAE
LAIEAQLKSEADHETRNVIRLDLHRMIINKRSKINTLTEFYDLFKEKNTP
ARNGTRQTMVALKDRTRLDGIVVTTTMPTSQGTLHLVESRQLVDRGHAVY
QELQVTNLATGGSNVTRRYWRRVPVTDEDEETLLRENLQAPVV*
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mRNA from alignment at P-wetherbeei_contig7370:16..2215-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig7370.1.2 ID=mRNA_P-wetherbeei_contig7370.1.2|Name=mRNA_P-wetherbeei_contig7370.1.2|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=2200bp|location=Sequence derived from alignment at P-wetherbeei_contig7370:16..2215- (Phaeothamnion wetherbeei SAG_119_79)
CCCGTCGGATGTTCCTCGAGTTTTTTCTCCACTCCCATCCCCCGAATAAT
TTCGGAATCTCGAGTATATCGCGTCCGAGAAGTGATTACAAGCGTGGCGT
GCCAGCAAGGCCACACAATCGAGCGACCTCCCTTCTCCGCACTGTTTCGG
CGATCGGTGAATCTCCCATCTCTAAGACCGACCATGCGTCGCGCCCCTCC
AACTAACCCGGTTGCCCTGCCGCCGGCGCCGGCGATGGAAGGCGAGTACG
TTACCCTCTCGGGAACGTGGGTTCTCAACAAGCACAGGAGCGACACGATG
GAGGGATTTCTGCGCATCATGGGCGTCGCGGAGCTCGCCATCGAGGCGCA
GCTTAAGAGCGAGGCCGATCACGAGACCCGTAACGTGATACGGCTGGATC
TCCACCGCATGATTATCAACAAGCGAAGCAAGGCGAGGTAGTGGAAAGAA
TGATCGACCTTTTGCCTCCACGTCTTTTGATGTGGAAATCAGAATAAATC
CCATAAACGACATCTCGTTTTAAGAACGCGATGAATCGGATTCCCTTCGC
AACAGATCAACACCCTGACCGAGTTTTATGACCTATTCAAGGAGAAGAAC
ACTCCGGCGCGCAACGGGACGAGACAGGTGAGGAAATTTCCTTCCTTTTG
CCGCGTTAGTTTATCCTCTTCGCGTTTTCGCTCTTATTCTTTACATTGCG
GTGTTGCGGTGTCATTCATGCATTATGCAGATGGTAATTTGTTGTGGCAA
TTTTCGCCTGTCAATCTGTGTACAACCATTTTCAAAAAATCTGGAGGTGA
TGCTCCCCCGAGCTAACAGTGGCTTCGTTTTCGACGGGATCTCAACCTGC
AGCCTCTGCCGCCGAAAATTTTCGCGCGCAAACAACCGACCTGCAAAACG
ACGAGCAGACAATGGTGGCGCTGAAGGACCGGACGCGGCTGGACGGCATT
GTTGTGACGACAACCATGCCGACGTCGCAGGGCACGCTGCATCTCGTCGA
GTCGCGGCAGCTGGTGGACCGCGGCCACGCCGTCTATCAGGAGCTGCAGG
TGACGAACTTGGCGACAGGCGGCTCCAATGTGACGCGCCGCTACTGGCGC
CGCGTGCCTGTCACGGACGAAGACGAGGAGACGCTGCTGCGCGAGAACCT
CCAGGCGCCCGTCGTGTGATGATTTCTACCGACTGGACGGATGGAAATAT
GAAAAAAATGACGCCGTGGCACGCTTGTCGCAATGACTGGTGCGGCGTCT
GATGCGGGTTCTGACGCAGCGGCTCTCGTCGGAGCTGGAGCGGCAACTAA
GGCGTTGCAGCTGGTGCGGCTACTGGCGCAGGAGCTGGCGCGACGATGGC
GTAGCAGCTAGAGCAGCTGCATGGCTCCGGCGCTTCGATAACAGCATCTT
CAAGTGCGGCGACACATGATGCGGCAACGGACACAGTTCCTGGCGCGGTG
ATTGGAGCGGCTGGCGAGGCGGAGATGCAGCACGCATCTGGATATCGTCA
GCGACGGTTTGCAATGACAGAACTATTGGTGGAACAGCTTACTGCAGAAC
ACCCGACAGCACCCCCGGAAGAAGAAAGAAGAGGTCTTTTGGTCAGCTTT
GAGCGGGGCGTATGGCCCGTGATGGACGGGCGAGGCGGAAGATGCTGCCT
AGCGCTTTGACCTGTGAGAGCCTTGCCACATTCGCCGCTGCAAGCGTTTC
GAACGCTGCCGAAACGTCAATCGGAGGCGCACTGCACCTGCTGCCGTCTC
TTGGGCAATCTCCTTCCGTTTGGGGGATGCACCCAAATTCACCGAGGCGC
AGACTCAGCTGGCACCGCGCCGTCACTGCACGAGCCATTTCTCTTGCGAT
GAGACGATGGCTGCCAGCGGCAAATGACGGCGAAAGAGCGGTTATTCGGG
ATACGGTCTCTTCGTGAAGGATCGTGGCGCGAGAGGGAGGGAGGAATGGT
CTACTGTTCTTCCTGGACAATCTTTCGATGGAGTGGCGGCTGCGGCAAGC
GGTTCCGATGCCGTCGCTGGCATTGTCGCCGCTGCAAGGGCAGGAGCTGC
ACGAGGAACGTCAGAGTGAAAGAAACAGAATGGAGGGCTTGCTGAAATTG
GTAGTTAGGTAGTTGATACAATTTTCAGTATTTTTTCGTGAAAAGTTTGT
CCTAGACGGTCCAATGCGATGTATTTTTGAGACAGGTAGGGAAAGAGCGC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig7370:16..2215-

>mRNA_P-wetherbeei_contig7370.1.2 ID=mRNA_P-wetherbeei_contig7370.1.2|Name=mRNA_P-wetherbeei_contig7370.1.2|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=582bp|location=Sequence derived from alignment at P-wetherbeei_contig7370:16..2215- (Phaeothamnion wetherbeei SAG_119_79)
ATGCGTCGCGCCCCTCCAACTAACCCGGTTGCCCTGCCGCCGGCGCCGGC
GATGGAAGGCGAGTACGTTACCCTCTCGGGAACGTGGGTTCTCAACAAGC
ACAGGAGCGACACGATGGAGGGATTTCTGCGCATCATGGGCGTCGCGGAG
CTCGCCATCGAGGCGCAGCTTAAGAGCGAGGCCGATCACGAGACCCGTAA
CGTGATACGGCTGGATCTCCACCGCATGATTATCAACAAGCGAAGCAAGA
TCAACACCCTGACCGAGTTTTATGACCTATTCAAGGAGAAGAACACTCCG
GCGCGCAACGGGACGAGACAGACAATGGTGGCGCTGAAGGACCGGACGCG
GCTGGACGGCATTGTTGTGACGACAACCATGCCGACGTCGCAGGGCACGC
TGCATCTCGTCGAGTCGCGGCAGCTGGTGGACCGCGGCCACGCCGTCTAT
CAGGAGCTGCAGGTGACGAACTTGGCGACAGGCGGCTCCAATGTGACGCG
CCGCTACTGGCGCCGCGTGCCTGTCACGGACGAAGACGAGGAGACGCTGC
TGCGCGAGAACCTCCAGGCGCCCGTCGTGTGA
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