mRNA_P-wetherbeei_contig7360.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig7360.1.1
Unique NamemRNA_P-wetherbeei_contig7360.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig7360.1.1 vs. uniprot
Match: A0A835ZB77_9STRA (P-loop containing nucleoside triphosphate hydrolase protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZB77_9STRA)

HSP 1 Score: 194 bits (492), Expect = 4.550e-51
Identity = 130/280 (46.43%), Postives = 162/280 (57.86%), Query Frame = 1
Query:    1 SIGVKELLMTLQRKARLPRRRDDQPFYMAIDHCFAIRGQGTVLTGTVLSG-----RTFELPELRTTKKVKSIQMFRRPVAAARQGDRVGIAVAGLDPSLIERGAAAAPGTVALASAAVALVRKVGFFAGRVRSGALLHVTLGHSTVIAAATFFGAAEIA-----RAKAAAATTGSRASSGPGKLGLPLNALPP----WQGEFAAQAELAGMPVGGCDGDXXXXXXXXXXXXXXXXXXXXXXXXXDNGWATPLQYTLLQFHSPVLAPPDGLVVGSRLDAMA 798
            S GV EL   L+   R P+R D  PF+MA+DHCFA+RGQGTVLTGTVLSG     +  ELPEL  T+KVKS+Q++RRPV  A+QGDRVG+ VAGLD +L+ERG AAAPG +    AAVA VR V FF G+  SG  LHV+ GH+TV+A AT+FGAAE+A     R+ A +   G+    G       L+ +PP    W+ +F  Q  L      G D                                 PLQ+ LLQF +PV APP GLV+GS+LD  A
Sbjct:  222 SAGVVELAELLRSLVRSPQRSDTGPFHMAVDHCFALRGQGTVLTGTVLSGAVEVGQMIELPELAITRKVKSMQVYRRPVQRAQQGDRVGVCVAGLDAALVERGVAAAPGALRPVRAAVAAVRAVKFFRGKCPSGGKLHVSTGHATVMATATYFGAAEMAAILVDRSPAQSEEQGTVPPPGA------LSDIPPVRVDWRRDFLQQPAL----TRGSD---------------RPDSQAAASAATSQEGRPPLQFALLQFQTPVFAPPGGLVIGSKLDGDA 476          
BLAST of mRNA_P-wetherbeei_contig7360.1.1 vs. uniprot
Match: A0A6H5KRB1_9PHAE (Tr-type G domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KRB1_9PHAE)

HSP 1 Score: 180 bits (456), Expect = 2.950e-45
Identity = 123/287 (42.86%), Postives = 158/287 (55.05%), Query Frame = 1
Query:    1 SIGVKELLMTLQRKARLPRRRDDQPFYMAIDHCFAIRGQGTVLTGTVLSGRT-----FELPELRTTKKVKSIQMFRRPVAAARQGDRVGIAVAGLDPSLIERGAAAAPGTVALASAAVALVRKVGFFAGRVRSGALLHVTLGHSTVIAAATFFGAAEIARAKAAA---ATTGSRASSGPGKLG----LPLN---ALP-PWQGEFAAQAELAGM----PVGGCDGDXXXXXXXXXXXXXXXXXXXXXXXXXDNGWATPLQYTLLQFHSPVLAPPDGLVVGSRLDAMAA 801
            ++G++ +   L R+AR+P RR   P Y A DHCF++RGQGT+LTGTVL+G        ELP LR  KKVKS+QMFR+PV  AR GDRVG+ VA LD  L+ERG    PG+V   SAA+ALVRKV  F G+  SGA  HV+LGHST +A ATFFGA+E+          +  G +A    G  G    L LN   +LP P +  F  Q  L G+       G D +                                LQY  L FH+PV+ PP  +V+GSRLD+M++
Sbjct:  259 AMGIEAVAGELTRRARVPSRRASAPLYFAFDHCFSVRGQGTILTGTVLTGEVKVNQLVELPSLRLQKKVKSMQMFRKPVFIARAGDRVGMCVASLDAKLMERGVVTTPGSVRPISAAIALVRKVPAFTGQCLSGAYCHVSLGHSTAMATATFFGASELKNGLLRLFEHSADGLQALEALGDAGQGQELSLNEIASLPFPSEAAFVQQTHLCGVGSENSTAGADDEVCVDERPV------------------------LQYCHLTFHTPVITPPSSVVLGSRLDSMSS 521          
BLAST of mRNA_P-wetherbeei_contig7360.1.1 vs. uniprot
Match: A0A7S2G4D0_9STRA (Hypothetical protein (Fragment) n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2G4D0_9STRA)

HSP 1 Score: 167 bits (423), Expect = 3.660e-44
Identity = 89/158 (56.33%), Postives = 113/158 (71.52%), Query Frame = 1
Query:    4 IGVKELLMTLQRKARLPRRR-DDQPFYMAIDHCFAIRGQGTVLTGTVLSGRT-----FELPELRTTKKVKSIQMFRRPVAAARQGDRVGIAVAGLDPSLIERGAAAAPGTVALASAAVALVRKVGFFAGRVRSGALLHVTLGHSTVIAAATFFGAAEI 459
            IG+  LL  +     +P RR D +PFY +IDHCF+I+GQGTV+TGTVLSG+       E+P LR  KKVKS+QMFRRPV  A QGDRVGI + GLD  L+ERG AA PG V +  AA+ LVRK+ +F G  ++G+ +HVT+GHSTV+A  TFFGA E+
Sbjct:   88 IGLDTLLEVIHNTVAIPERRCDAEPFYFSIDHCFSIKGQGTVVTGTVLSGKVRINDLVEIPRLRVEKKVKSMQMFRRPVKVACQGDRVGICLQGLDAKLVERGIAATPGLVPVVDAAIVLVRKIRYFRGSCKTGSKMHVTIGHSTVLATVTFFGAKEL 245          
BLAST of mRNA_P-wetherbeei_contig7360.1.1 vs. uniprot
Match: A0A7S4E489_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S4E489_9STRA)

HSP 1 Score: 164 bits (414), Expect = 3.830e-40
Identity = 91/158 (57.59%), Postives = 113/158 (71.52%), Query Frame = 1
Query:    1 SIGVKELLMTLQRKARLPRRRDDQPFYMAIDHCFAIRGQGTVLTGTVLSGR-----TFELPELRTTKKVKSIQMFRRPVAAARQGDRVGIAVAGLDPSLIERGAAAAPGTVALASAAVALVRKVGFFAGRVRSGALLHVTLGHSTVIAAATFFGAAEI 459
            SIG+ EL+ TL+++AR+P+R  D PF+ AIDHCF IRGQGTV+TGT L G+     + ELP L   KKVKS+QMFRRP  A R GDR G+ +A LD + IERG  AAPG+V   +A +ALVRKV FF GR  +    HVTLGH+T +A A FFGAAE+
Sbjct:  198 SIGLDELVATLRKRARVPKRDTDGPFFFAIDHCFPIRGQGTVVTGTALRGQCRVGDSVELPALGLEKKVKSMQMFRRPAKAIRCGDRAGLCLAQLDAAAIERGVVAAPGSVPGLTAVLALVRKVRFFRGRTDTERTFHVTLGHTTTVATAYFFGAAEL 355          
BLAST of mRNA_P-wetherbeei_contig7360.1.1 vs. uniprot
Match: A0A0P7UHC8_SCLFO (Uncharacterized protein (Fragment) n=1 Tax=Scleropages formosus TaxID=113540 RepID=A0A0P7UHC8_SCLFO)

HSP 1 Score: 158 bits (400), Expect = 2.410e-39
Identity = 106/274 (38.69%), Postives = 146/274 (53.28%), Query Frame = 1
Query:    7 GVKELLMTLQRKARLPRRRDDQPFYMAIDHCFAIRGQGTVLTGTVLSGR-----TFELPELRTTKKVKSIQMFRRPVAAARQGDRVGIAVAGLDPSLIERGAAAAPGTVALASAAVALVRKVGFFAGRVRSGALLHVTLGHSTVIAAATFFGAAEIARAKAAAATTGSRASSGPGK---LGLPLNALPP-----WQGEFAAQAELAGMPVGGCDGDXXXXXXXXXXXXXXXXXXXXXXXXXDNGWATPLQYTLLQFHSPVLAPPDGLVVGSRLD 789
            GV EL+  L+R+A LPRR    P  MAIDHCF+IRGQGTV+TGTVL G      + E+P L+ T+KVKSIQMFR+PV  A QGDR+G+ V   DP L+ERG    PG++    A +  VRK+ +F G + + +  H+++GH TV+A  TFFG   +  + ++++    +A S PG       P ++ PP     +  E+  Q E A    G                                  A P Q+ LL+F  PV  PP  LV+GS+LD
Sbjct:   67 GVSELIELLKRQAYLPRRDPSGPLLMAIDHCFSIRGQGTVMTGTVLQGSLSLNDSVEIPALKVTRKVKSIQMFRQPVGGAMQGDRIGVCVTQFDPKLLERGLVCTPGSLRTLHAGLMSVRKISYFRGALTTRSKFHISVGHETVMAKVTFFG---LPPSTSSSSPDNCKALSRPGDPQTTSFPPDSTPPETSFSFDTEYFFQEEYAVGQGGPAKA------------------------------AEPQQWALLEFEKPVTCPPLCLVIGSKLD 307          
BLAST of mRNA_P-wetherbeei_contig7360.1.1 vs. uniprot
Match: A0A6P3W6E1_CLUHA (selenocysteine-specific elongation factor n=3 Tax=Clupeidae TaxID=55118 RepID=A0A6P3W6E1_CLUHA)

HSP 1 Score: 159 bits (403), Expect = 5.220e-39
Identity = 105/270 (38.89%), Postives = 145/270 (53.70%), Query Frame = 1
Query:    4 IGVKELLMTLQRKARLPRRRDDQPFYMAIDHCFAIRGQGTVLTGTVLSGR-----TFELPELRTTKKVKSIQMFRRPVAAARQGDRVGIAVAGLDPSLIERGAAAAPGTVALASAAVALVRKVGFFAGRVRSGALLHVTLGHSTVIAAATFFGAAEIARAKAAAATTGSRASSGPGKLGLPLNALPP---WQGEFAAQAELAGMPVGGCDGDXXXXXXXXXXXXXXXXXXXXXXXXXDNGWATPLQYTLLQFHSPVLAPPDGLVVGSRLD 789
            +G+ EL+  L+++A LP+R       MA+DHCF+IRGQGTV+TGTVL G      T E+P L+ TKKVKS+QMFRRPV+ A QGDRVG+ V   DP L+ERG   +PG++    AA+  V K+ +F G + S    H++LGH TV+A  +FFG+A         A  GS++ + P     P+N       +  E+  Q E     +G  +G                                P Q+ LL+F  PV  PP+ LV+GSRLD
Sbjct:  198 LGIPELVEVLKQQAFLPQRDSTGSLLMAVDHCFSIRGQGTVMTGTVLQGAVHINDTVEIPALKVTKKVKSMQMFRRPVSMAVQGDRVGVCVTQFDPKLLERGVVCSPGSLHTLYAALIAVHKISYFRGTLASRTKFHISLGHETVMARVSFFGSA---------AACGSQSGAEPDPESQPVNEAEAGFSFDREYRHQEEYV---IGQSEGK------------------------------APEQWALLEFEKPVTCPPNCLVIGSRLD 425          
BLAST of mRNA_P-wetherbeei_contig7360.1.1 vs. uniprot
Match: A0A3B4B9C7_9GOBI (Eukaryotic elongation factor, selenocysteine-tRNA-specific n=3 Tax=Oxudercinae TaxID=497678 RepID=A0A3B4B9C7_9GOBI)

HSP 1 Score: 158 bits (399), Expect = 1.660e-38
Identity = 105/268 (39.18%), Postives = 140/268 (52.24%), Query Frame = 1
Query:    7 GVKELLMTLQRKARLPRRRDDQPFYMAIDHCFAIRGQGTVLTGTVLSGR-----TFELPELRTTKKVKSIQMFRRPVAAARQGDRVGIAVAGLDPSLIERGAAAAPGTVALASAAVALVRKVGFFAGRVRSGALLHVTLGHSTVIAAATFFGAAEIARAKAAAATTGSRASSGPGKLGL--PLNALPPWQGEFAAQAELAGMPVGGCDGDXXXXXXXXXXXXXXXXXXXXXXXXXDNGWATPLQYTLLQFHSPVLAPPDGLVVGSRLD 789
            GV EL+  L+++  LP+R       MA+DHCF+IRGQGTV+TGT+L G      T E+P L+ TKKVKSIQMFR+P + A QGDRVG+ V   DP L+ERG    PG++ +  AAV  V K+G+F G + + A  H+T+GH TV+A  +FFG              GS +S+ P K  L  P N    +  E+  Q E    P  G  G                              + P Q+ LL+F  PV  P   LV+GS+LD
Sbjct:  193 GVSELIQLLKKQTYLPQRDPGGDLLMAVDHCFSIRGQGTVMTGTILQGALAINDTVEIPALKVTKKVKSIQMFRKPASTAMQGDRVGVCVTQFDPKLLERGVICTPGSLRMLYAAVITVHKIGYFKGALSTRAKFHITVGHETVMAKVSFFGL-----------PPGSTSSNSPQKNSLESPFN----FDREYFYQDEYLISPAEGSTG------------------------------SDPEQWALLEFERPVTCPSLCLVIGSKLD 415          
BLAST of mRNA_P-wetherbeei_contig7360.1.1 vs. uniprot
Match: A0A4D9D7I1_9STRA (Tr-type G domain-containing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9D7I1_9STRA)

HSP 1 Score: 159 bits (402), Expect = 5.290e-38
Identity = 109/278 (39.21%), Postives = 145/278 (52.16%), Query Frame = 1
Query:    1 SIGVKELLMTLQRKARLPRRRDDQPFYMAIDHCFAIRGQGTVLTGTVLSGRT-----FELPELRTTKKVKSIQMFRRPVAAARQGDRVGIAVAGLDPSLIERGAAAAPGTVALASAAVALVRKVGFFAGRVRSGALLHVTLGHSTVIAAATFFGAAEIARA--KAAAATTGSRASSGPGKLGLPLNALP--------PWQGEFAAQAELAGMPVGGCDGDXXXXXXXXXXXXXXXXXXXXXXXXXDNGWATPLQYTLLQFHSPVLAPPDGLVVGSRLD 789
            S+G+++L   LQ+   LPRR    P +MA+DHCF ++GQGTVLTGTVL GR       ELP L  T++VKS+Q F R VA A+ GDRVG+ +  LD   +ERGA   PG+V   + AV  VR++  F GRV+SG  +HV++GH TV+A  TFFGA E+ R   K            G G  G  + A P         W+ ++  QAE+AG      +G+                                 QY L +F +PVL P   LV+GSRLD
Sbjct:  299 SLGLEDLSRALQKTISLPRRSPSGPLFMAVDHCFPMKGQGTVLTGTVLRGRVSVQDVVELPALGLTRRVKSLQAFHRKVAEAQHGDRVGLCLTHLDAKEMERGALCTPGSVPWVTWAVGAVRQIRAFRGRVKSGERVHVSVGHGTVMATLTFFGAKELVRGREKDKKGRQPREGRDGKGVRGDGVEARPWAPPDFPFSWEEDYLYQAEMAGAVEDEEEGEKEAGFKVSKEGDRRRRREYQE------------QYALFKFETPVLCPLPCLVIGSRLD 564          
BLAST of mRNA_P-wetherbeei_contig7360.1.1 vs. uniprot
Match: A0A8C9VP07_SCLFO (Eukaryotic elongation factor, selenocysteine-tRNA specific n=2 Tax=Scleropages formosus TaxID=113540 RepID=A0A8C9VP07_SCLFO)

HSP 1 Score: 157 bits (396), Expect = 5.700e-38
Identity = 105/274 (38.32%), Postives = 146/274 (53.28%), Query Frame = 1
Query:    7 GVKELLMTLQRKARLPRRRDDQPFYMAIDHCFAIRGQGTVLTGTVLSGR-----TFELPELRTTKKVKSIQMFRRPVAAARQGDRVGIAVAGLDPSLIERGAAAAPGTVALASAAVALVRKVGFFAGRVRSGALLHVTLGHSTVIAAATFFGAAEIARAKAAAATTGSRASSGPGK---LGLPLNALPP-----WQGEFAAQAELAGMPVGGCDGDXXXXXXXXXXXXXXXXXXXXXXXXXDNGWATPLQYTLLQFHSPVLAPPDGLVVGSRLD 789
            GV +L+  L+R+A LPRR    P  MAIDHCF+IRGQGTV+TGTVL G      + E+P L+ T+KVKSIQMFR+PV  A QGDR+G+ V   DP L+ERG    PG++    A +  VRK+ +F G + + +  H+++GH TV+A  TFFG   +  + ++++    +A S PG       P ++ PP     +  E+  Q E A    G                                  A P Q+ LL+F  PV  PP  LV+GS+LD
Sbjct:  200 GVSKLIELLKRQAYLPRRDPSGPLLMAIDHCFSIRGQGTVMTGTVLQGSLSLNDSVEIPALKVTRKVKSIQMFRQPVGGAMQGDRIGVCVTQFDPKLLERGLVCTPGSLRTLHAGLMSVRKISYFRGALTTRSKFHISVGHETVMAKVTFFG---LPPSTSSSSPDNCKALSRPGDPQTTSFPPDSTPPETSFSFDTEYFFQEEYAVGQGGPAKA------------------------------AEPQQWALLEFEKPVTCPPLCLVIGSKLD 440          
BLAST of mRNA_P-wetherbeei_contig7360.1.1 vs. uniprot
Match: A0A3B3BUZ1_ORYME (Eukaryotic elongation factor, selenocysteine-tRNA-specific n=1 Tax=Oryzias melastigma TaxID=30732 RepID=A0A3B3BUZ1_ORYME)

HSP 1 Score: 155 bits (393), Expect = 6.860e-38
Identity = 103/266 (38.72%), Postives = 138/266 (51.88%), Query Frame = 1
Query:    7 GVKELLMTLQRKARLPRRRDDQPFYMAIDHCFAIRGQGTVLTGTVLSGR-----TFELPELRTTKKVKSIQMFRRPVAAARQGDRVGIAVAGLDPSLIERGAAAAPGTVALASAAVALVRKVGFFAGRVRSGALLHVTLGHSTVIAAATFFGAAEIARAKAAAATTGSRASSGPGKLGLPLNALPPWQGEFAAQAELAGMPVGGCDGDXXXXXXXXXXXXXXXXXXXXXXXXXDNGWATPLQYTLLQFHSPVLAPPDGLVVGSRLD 789
            GV+EL+  L+++  LP+R       MA+DHCF+IRGQGTV+TGT+L G      T E+P L+ TKK+KS+QMFR+PV+ A QGDRVG+ V   DP L+ERG    PG++     AV  VRK+G+F G + + A LH+T+GH TV+A  +FFG               S A S P +L   L A   +  E+  Q E       G                               G   P Q+ LL+F  PV  P   LV+GS+LD
Sbjct:  161 GVQELIELLKKQTYLPKRDPAGDLLMAVDHCFSIRGQGTVMTGTILQGSLAVNDTVEIPVLKVTKKIKSVQMFRKPVSGAMQGDRVGVCVTQFDPKLLERGVVCTPGSLRTLFGAVISVRKIGYFKGSLATRAKLHITVGHETVMARVSFFGLPP------------SDAQSAPPEL-RSLEAPFDFDREYVYQDEYVSAQADGA-----------------------------GGGPDPEQWALLEFERPVTCPALCLVIGSKLD 384          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig7360.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835ZB77_9STRA4.550e-5146.43P-loop containing nucleoside triphosphate hydrolas... [more]
A0A6H5KRB1_9PHAE2.950e-4542.86Tr-type G domain-containing protein n=2 Tax=Ectoca... [more]
A0A7S2G4D0_9STRA3.660e-4456.33Hypothetical protein (Fragment) n=1 Tax=Dictyocha ... [more]
A0A7S4E489_9STRA3.830e-4057.59Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
A0A0P7UHC8_SCLFO2.410e-3938.69Uncharacterized protein (Fragment) n=1 Tax=Sclerop... [more]
A0A6P3W6E1_CLUHA5.220e-3938.89selenocysteine-specific elongation factor n=3 Tax=... [more]
A0A3B4B9C7_9GOBI1.660e-3839.18Eukaryotic elongation factor, selenocysteine-tRNA-... [more]
A0A4D9D7I1_9STRA5.290e-3839.21Tr-type G domain-containing protein n=2 Tax=Monodo... [more]
A0A8C9VP07_SCLFO5.700e-3838.32Eukaryotic elongation factor, selenocysteine-tRNA ... [more]
A0A3B3BUZ1_ORYME6.860e-3838.72Eukaryotic elongation factor, selenocysteine-tRNA-... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig7360contigP-wetherbeei_contig7360:462..2699 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D8LFS8
Preferred nameSELB
PFAMsGTP_EFTU,GTP_EFTU_D2,RIBIOP_C
Model size1529
Max annot lvl2759|Eukaryota
KEGG koko:K03833
Hectar predicted targeting categoryother localisation
GOsGO:0001514,GO:0006412,GO:0006414,GO:0006417,GO:0006451,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009889,GO:0009987,GO:0010467,GO:0010468,GO:0010556,GO:0010608,GO:0019222,GO:0019538,GO:0031323,GO:0031326,GO:0032268,GO:0034248,GO:0034641,GO:0034645,GO:0043043,GO:0043170,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0050789,GO:0050794,GO:0051171,GO:0051246,GO:0060255,GO:0065007,GO:0071704,GO:0080090,GO:1901564,GO:1901566,GO:1901576,GO:2000112
Exons5
Evalue7.27e-45
EggNOG OGsCOG3276@1|root,KOG0461@2759|Eukaryota
Ec32 ortholog descriptionSelB, translation elongation factor specific to Sec-tRNA
Ec32 orthologEc-01_001080.1
Descriptionselenocysteine incorporation
Cds size1230
COG categoryJ
BRITEko00000,ko03012
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig7360.1.1prot_P-wetherbeei_contig7360.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig7360 1058..2675 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186976.2812479-UTR-P-wetherbeei_contig7360:461..6481683186976.2812479-UTR-P-wetherbeei_contig7360:461..648Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig7360 462..648 -
1683186976.2911496-UTR-P-wetherbeei_contig7360:969..10571683186976.2911496-UTR-P-wetherbeei_contig7360:969..1057Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig7360 970..1057 -
1683186976.3318927-UTR-P-wetherbeei_contig7360:2675..26991683186976.3318927-UTR-P-wetherbeei_contig7360:2675..2699Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig7360 2676..2699 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186976.2993035-CDS-P-wetherbeei_contig7360:1057..12971683186976.2993035-CDS-P-wetherbeei_contig7360:1057..1297Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig7360 1058..1297 -
1683186976.3079016-CDS-P-wetherbeei_contig7360:1351..15761683186976.3079016-CDS-P-wetherbeei_contig7360:1351..1576Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig7360 1352..1576 -
1683186976.3159347-CDS-P-wetherbeei_contig7360:1658..22941683186976.3159347-CDS-P-wetherbeei_contig7360:1658..2294Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig7360 1659..2294 -
1683186976.3239844-CDS-P-wetherbeei_contig7360:2546..26751683186976.3239844-CDS-P-wetherbeei_contig7360:2546..2675Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig7360 2547..2675 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig7360.1.1

>prot_P-wetherbeei_contig7360.1.1 ID=prot_P-wetherbeei_contig7360.1.1|Name=mRNA_P-wetherbeei_contig7360.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=410bp
MTLQRKARLPRRRDDQPFYMAIDHCFAIRGQGTVLTGTVLSGRTFELPEL
RTTKKVKSIQMFRRPVAAARQGDRVGIAVAGLDPSLIERGAAAAPGTVAL
ASAAVALVRKVGFFAGRVRSGALLHVTLGHSTVIAAATFFGAAEIARAKA
AAATTGSRASSGPGKLGLPLNALPPWQGEFAAQAELAGMPVGGCDGDGDD
GNGDGNRSARGDGGDGDGGGGGDNGWATPLQYTLLQFHSPVLAPPDGLVV
GSRLDAMAAEEAAAAAVAAAAAAPQEEWQRRWRSAASRSTGIWSTVSATT
RCSGCGCTPTSSERGRSTASPSPLRSAGAAPPLSPFGRCTGEASSARRPR
CSASWGSSLRRRRAIWGRSRVPSGRGASSRPSFRAERGSLLVTGCCCTSA
SSRGTSRGR*
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mRNA from alignment at P-wetherbeei_contig7360:462..2699-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig7360.1.1 ID=mRNA_P-wetherbeei_contig7360.1.1|Name=mRNA_P-wetherbeei_contig7360.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=2238bp|location=Sequence derived from alignment at P-wetherbeei_contig7360:462..2699- (Phaeothamnion wetherbeei SAG_119_79)
AGCATCGGCGTGAAGGAACTGCTGATGACGTTGCAGCGCAAGGCGCGGCT GCCGCGGCGGCGGGACGATCAGCCTTTCTACATGGCAATCGATCACTGCT TTGCAATCCGCGGCCAGGGCACTGTCCTTACCGGGACCGTTCTCAGCGGC CGCGTCGCCCTCAACCAGGCGCGTCGGTTCCTCAATTCAGAGTGCGATTT ATCCGGCGGGAAGTTACTGCAGAAGTTAACGAGAGCCGAGATGTATAGAG GGCCTGTCAGCGGCAATATACTATGCGTTCAGCTGCTTTGTCTGCGGAAA CATGGGCCTCTGGTCTCAGCTGTTTCTTAAGTGACCGAAGCATCACGTTT GACTCTGCACATATGCAAATCACCAATTCATCGATCACACACTAAAAACG CGCAGACCTTTGAGCTGCCGGAGCTGCGCACCACCAAAAAGGTCAAGTCG ATACAGATGTTCCGCCGCCCCGTGGCGGCGGCGCGGCAGGGAGACCGCGT CGGCATCGCCGTCGCCGGACTGGACCCCTCCCTCATAGAACGCGGCGCGG CGGCGGCGCCGGGCACGGTGGCGCTGGCGTCGGCGGCCGTGGCGCTGGTC CGCAAGGTGGGCTTCTTCGCGGGCCGCGTGCGCTCGGGGGCGCTGCTGCA CGTAACGCTAGGGCACAGCACTGTCATCGCCGCCGCCACCTTCTTCGGGG CGGCGGAAATTGCGAGGGCCAAAGCCGCCGCTGCTACCACCGGAAGTCGT GCTTCCTCCGGTCCAGGAAAGCTCGGGCTACCGTTGAATGCGTTGCCGCC GTGGCAAGGAGAGTTTGCGGCACAGGCGGAGCTCGCCGGCATGCCTGTGG GCGGCTGCGACGGCGACGGAGACGATGGCAACGGCGATGGCAACAGGAGT GCTCGCGGCGACGGCGGCGACGGCGACGGCGGCGGCGGCGGCGACAACGG CTGGGCGACACCGTTACAGTACACGCTGCTCCAATTCCACAGCCCCGTGC TGGCGCCGCCCGACGGTCTTGTGGTGGGGAGTCGACTCGACGTCGACGAA CGGGCAGCAGGCACCGCTGCCGCAGCTGCCGGCGCCGACCCTGGAGCCGC TTCTGCGGGACCTGCGCATGCAGGCTATGGCGGCGGAGGAGGCAGCGGCA GCGGCGGTGGCAGCCGCGGCGGCGGCACCGCAGGAGGAGTGGCAGCGGCG GTGGCGCAGTGCCGCATCGCGTTCTACGGGCATCTGGTCGACCGTCTCGG CGACGACGCGCTGCAGCGGCTGCGGCTGTACACCGACAAGCAGCGAGAGG GGCAGGTCTACCGCGTCGCCGAGCCCGTTGCGTTCGGCGGGAGCGGCGGT GCAGCAACCGACCCCGCAGCTGGTATCCAGCCCACTGCAGGGGGAGCCCG AGCCGCCTCTGTCGCCTTTCGGGAGGTGTACGGGCGAGGCCTCTTCCGCA AGGAGACCAAGATGCAGCGCTTCGTGGGGCTCATCATTACGACGGCGGCG GGCGATATGGGGACGATCGAGGGTGCCTTCGGGCAGGGGGGCAAGTTCAA GGCCGTCTTTCCGTGCGGAGCGCGGGTCGCTGTTGGTGACCGGCTGCTGC TGCACTTCCGCAAGTTCGCGCGGGACAAGTCGCGGACGATGAGCCAGCAG CACCTGGCGGAAGCGTACCGGCGGGCTACGGCGGCGGCAGCGGCAGGGGC GGCGGCGAAAGGAGGCGGCGATGTGGCGCCGTTGCCGCTCACCATGGTGC CGGTGCAATTGCTGCCGCCACTGCCAGCGGCTGCGTCGGCGGGGGCCGAT ACGGCCATGGCATCGCCTAGATCTATGCTGCCGCCGTCACCGCCGCCGTC ACCGCCGCCGTCAGCCGCCTCCAGCGGCCCCGCCAACGCAGGCGTAAGTG GTGCAGGCGGAAACGTAAGAAAAGCACCAGCCAACCGGCGACCCGCACCA CTCGGCGGGGTGGCGACAGCACATCATGTCACCGCGGCTACCGCAGCCCC ACCCGCCGCCTCTGCCGCGAAAATTAAAACGGCGGCCCCGGCGGCGACTA GTGCGGCAGGCCCGGCAGCGGCTGCTGCCGCTGCAGCAGCTTCGGCGGTG AAGGCCGTCGGCCCACCGCCCCCAGTAGCGCGACGGCGCGAGGGCGCGAT CGAGGCGCTCAAAGGAGACGCGCTGCCTGACGGGCGCCGCACGGTAGCTA TCGTCGGCGGCTTCTTTTCCATCGAGGAGGACATTCGA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig7360:462..2699-

>mRNA_P-wetherbeei_contig7360.1.1 ID=mRNA_P-wetherbeei_contig7360.1.1|Name=mRNA_P-wetherbeei_contig7360.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=1230bp|location=Sequence derived from alignment at P-wetherbeei_contig7360:462..2699- (Phaeothamnion wetherbeei SAG_119_79)
ATGACGTTGCAGCGCAAGGCGCGGCTGCCGCGGCGGCGGGACGATCAGCC
TTTCTACATGGCAATCGATCACTGCTTTGCAATCCGCGGCCAGGGCACTG
TCCTTACCGGGACCGTTCTCAGCGGCCGCACCTTTGAGCTGCCGGAGCTG
CGCACCACCAAAAAGGTCAAGTCGATACAGATGTTCCGCCGCCCCGTGGC
GGCGGCGCGGCAGGGAGACCGCGTCGGCATCGCCGTCGCCGGACTGGACC
CCTCCCTCATAGAACGCGGCGCGGCGGCGGCGCCGGGCACGGTGGCGCTG
GCGTCGGCGGCCGTGGCGCTGGTCCGCAAGGTGGGCTTCTTCGCGGGCCG
CGTGCGCTCGGGGGCGCTGCTGCACGTAACGCTAGGGCACAGCACTGTCA
TCGCCGCCGCCACCTTCTTCGGGGCGGCGGAAATTGCGAGGGCCAAAGCC
GCCGCTGCTACCACCGGAAGTCGTGCTTCCTCCGGTCCAGGAAAGCTCGG
GCTACCGTTGAATGCGTTGCCGCCGTGGCAAGGAGAGTTTGCGGCACAGG
CGGAGCTCGCCGGCATGCCTGTGGGCGGCTGCGACGGCGACGGAGACGAT
GGCAACGGCGATGGCAACAGGAGTGCTCGCGGCGACGGCGGCGACGGCGA
CGGCGGCGGCGGCGGCGACAACGGCTGGGCGACACCGTTACAGTACACGC
TGCTCCAATTCCACAGCCCCGTGCTGGCGCCGCCCGACGGTCTTGTGGTG
GGGAGTCGACTCGACGCTATGGCGGCGGAGGAGGCAGCGGCAGCGGCGGT
GGCAGCCGCGGCGGCGGCACCGCAGGAGGAGTGGCAGCGGCGGTGGCGCA
GTGCCGCATCGCGTTCTACGGGCATCTGGTCGACCGTCTCGGCGACGACG
CGCTGCAGCGGCTGCGGCTGTACACCGACAAGCAGCGAGAGGGGCAGGTC
TACCGCGTCGCCGAGCCCGTTGCGTTCGGCGGGAGCGGCGCCGCCTCTGT
CGCCTTTCGGGAGGTGTACGGGCGAGGCCTCTTCCGCAAGGAGACCAAGA
TGCAGCGCTTCGTGGGGCTCATCATTACGACGGCGGCGGGCGATATGGGG
ACGATCGAGGGTGCCTTCGGGCAGGGGGGCAAGTTCAAGGCCGTCTTTCC
GTGCGGAGCGCGGGTCGCTGTTGGTGACCGGCTGCTGCTGCACTTCCGCA
AGTTCGCGCGGGACAAGTCGCGGACGATGA
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