mRNA_P-wetherbeei_contig7359.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig7359.1.1
Unique NamemRNA_P-wetherbeei_contig7359.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig7359.1.1 vs. uniprot
Match: D7FHW9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHW9_ECTSI)

HSP 1 Score: 192 bits (487), Expect = 8.790e-55
Identity = 89/149 (59.73%), Postives = 115/149 (77.18%), Query Frame = 1
Query:    1 DGVVAALRTDLGPTWEISVILHSEKADPCRLYAELADADMLLTPHGFQSMLLLFLPPGAALFEIFPYKYWKEGYKPLALEWGASYEYIMSRSVTGYRGMVLFFVPQEVCMRSIHCRKFSRADDVRLEPGHLQKVVQVARRAAKERKPYL 447
            D  VA  +  LGPTWE+  I+H    +PC LY++L DADMLLTPHGFQSMLLLFLPPGA + E+FPYKYWKEGY PLA EWG  +E+IMSR V+  + + LFFVP E CM+SIHCRK+SR+ DVRLE  HL+++ + A++A+K ++ +L
Sbjct:  532 DDNVAVFQHLLGPTWEVVQIVHDNAHEPCWLYSQLMDADMLLTPHGFQSMLLLFLPPGATILEVFPYKYWKEGYAPLAKEWGVRHEHIMSRPVSWEKRLALFFVPLERCMKSIHCRKWSRSADVRLEEHHLRQIAKAAKQASKRKREFL 680          
BLAST of mRNA_P-wetherbeei_contig7359.1.1 vs. uniprot
Match: A0A6H5L8P6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L8P6_9PHAE)

HSP 1 Score: 192 bits (488), Expect = 1.420e-54
Identity = 89/150 (59.33%), Postives = 115/150 (76.67%), Query Frame = 1
Query:    1 DGVVAALRTDLGPTWEISVILHSEKADPCRLYAELADADMLLTPHGFQSMLLLFLPPGAALFEIFPYKYWKEGYKPLALEWGASYEYIMSRSVTGYRGMVLFFVPQEVCMRSIHCRKFSRADDVRLEPGHLQKVVQVARRAAKERKPYLD 450
            D  VA  +  LGPTWE+  I+H    +PC LY++L DADMLLTPHGFQSMLLLFLPPGA + E+FPYKYWKEGY PLA EWG  +E+IMSR V+  + + LFFVP E CM+SIHCRK+SR+ DVRLE  HL+++ + A++A+K ++ +L 
Sbjct:  605 DDNVAVFQHLLGPTWEVVQIVHDNAHEPCWLYSQLMDADMLLTPHGFQSMLLLFLPPGATILEVFPYKYWKEGYAPLAKEWGVRHEHIMSRPVSWEKRLALFFVPLERCMKSIHCRKWSRSADVRLEEHHLRQIAKAAKQASKRKREFLS 754          
BLAST of mRNA_P-wetherbeei_contig7359.1.1 vs. uniprot
Match: A0A7S2HI54_9STRA (Hypothetical protein (Fragment) n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2HI54_9STRA)

HSP 1 Score: 136 bits (343), Expect = 3.680e-36
Identity = 66/139 (47.48%), Postives = 95/139 (68.35%), Query Frame = 1
Query:   19 LRTDLGPTWEISVILHSEKADPCRLYAELADADMLLTPHGFQSMLLLFLPPGAALFEIFPYKYWKEGYKPLALEWGASYEYIM-SRSVTGYRGMVLFFVPQEVCMRSIHCRKFSRADDVRLEPGHLQKVVQVARRAAKE 432
            LR  LG TW ++V++H E  DPC L+ EL   D+LLTPHGFQS+LL+F+  G+ALFE+FP+KYWK GY+P A E+G  + +   SR+ +  + + L  + QE CM SI CR ++R D+V ++   L KVV++AR +  E
Sbjct:  156 LRKRLGKTWNVTVVMHKENLDPCGLWEELRVTDLLLTPHGFQSILLIFMRRGSALFEVFPFKYWKIGYRPFANEYGLWHGWSQNSRATSWVKNVALSLISQERCMHSIDCRLYARQDNVYIDDSSLLKVVKLARLSVSE 294          
BLAST of mRNA_P-wetherbeei_contig7359.1.1 vs. uniprot
Match: A0A7S3XXH4_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XXH4_HETAK)

HSP 1 Score: 119 bits (298), Expect = 1.490e-28
Identity = 58/135 (42.96%), Postives = 79/135 (58.52%), Query Frame = 1
Query:    1 DGVVAALRTDLGPTWEISVILHSEKADPCRLYAELADADMLLTPHGFQSMLLLFLPPGAALFEIFPYKYWKEGYKPLALEWGASYEYIMSRSVTGYRGMVLFFVPQEVCMRSIHCRKFSRADDVRLEPGHLQKVV 405
            + +V AL   LGP WE+ V+LHS    PC +Y     AD+  T HGFQ++ +LF+PPG  ++E+FPYKYWK GY PL  E G ++ + MS         +L  VP  VC  S  CR F+R  DV +    L++VV
Sbjct:  315 EAMVEALEEQLGPEWELEVLLHSTDRHPCAMYESFHAADVFYTAHGFQTIAVLFMPPGGLVYEVFPYKYWKVGYAPLVREVGLTHHWAMSPPAGPVHRALLAAVPLSVCSLSYRCRLFARDADVVVGEAALRRVV 449          
BLAST of mRNA_P-wetherbeei_contig7359.1.1 vs. uniprot
Match: A0A7S3GPP9_9STRA (Hypothetical protein n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3GPP9_9STRA)

HSP 1 Score: 110 bits (276), Expect = 7.940e-27
Identity = 58/122 (47.54%), Postives = 75/122 (61.48%), Query Frame = 1
Query:   10 VAALRTDLGPT-WEISVILHSEKADPCRLYAELADADMLLTPHGFQSMLLLFLPPGAALFEIFPYKYWKEGYKPLALEWGASYEYIMSRSVTGYRGMVLFFVPQEVCMRSIHCRKFSRADDV 372
            VA LR+ L  + W+I +++H     PC L   L + D+LLTPHGFQSMLLLFLP    +FEIFP KY+K GY P   E+G ++   MS S   Y+ +VL +V    CM S  CR F+R  DV
Sbjct:  110 VAMLRSKLSESDWDIEILMHKTSRSPCTLMHHLYNTDILLTPHGFQSMLLLFLPRPGLMFEIFPEKYYKRGYGPFGAEYGVTHGGTMSPSTGYYQQLVLPYVSSAYCMESKFCRGFARNQDV 231          
BLAST of mRNA_P-wetherbeei_contig7359.1.1 vs. uniprot
Match: A0A6H5K1S1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1S1_9PHAE)

HSP 1 Score: 108 bits (269), Expect = 6.800e-25
Identity = 58/138 (42.03%), Postives = 83/138 (60.14%), Query Frame = 1
Query:    1 DGVVAALRTDLGPTWEISVILHSEKADPCRLYAELADADMLLTPHGFQSMLLLFLPPGAALFEIFPYKYWKEGYKPLALEWGASYEYIMSRSVTGYRGMVLFFVPQEVCMRSIHCRKFSRADDVRLEPGHLQKVVQVA 414
            D VV  L+  LG  W +++++H     PC L   LA  D+LLTPHGFQSML LF+ PG+ LFE+FP KY+K GY P+A      + Y MSR++    G    +   E CM+   CR ++R+ DV L+   L+++V +A
Sbjct:  274 DKVVEDLQERLGGGWIVNMMMHDSDRHPCVLVETLAGVDVLLTPHGFQSMLGLFMRPGSLLFEVFPQKYFKAGYAPMAEGLDVRHAYSMSRALRPMMGHS--YPSTETCMKWYLCRWYARSSDVELDEESLERLVDLA 409          
BLAST of mRNA_P-wetherbeei_contig7359.1.1 vs. uniprot
Match: A0A7S0GN44_MICPS (Hypothetical protein n=1 Tax=Micromonas pusilla TaxID=38833 RepID=A0A7S0GN44_MICPS)

HSP 1 Score: 105 bits (261), Expect = 2.430e-24
Identity = 60/153 (39.22%), Postives = 84/153 (54.90%), Query Frame = 1
Query:    1 DGVVAALRTDLGPTWEISVILHSEKADPCRLYAELADADMLLTPHGFQSMLLLFLPPGAALFEIFPYKYWKEGYKPLALEWGASYEYIMSRSVTGYRGMVLFFVPQEVCMRSIHCRKFSRADDVRLEPGHLQKVVQ---VARRAAKERKPYLD 450
            DG +  +R      W +SV+ HS+   PC L + LA A  L+TPHGFQSML LFLP  A + E+FP++Y+K GYK  ALEWG SY + MS   +    ++      + CMR  +CR  +R  DV +       + +   VA RA+ E +  L 
Sbjct:   81 DGSIRPVRF----VWRVSVVTHSDSFPPCALRSCLARASALVTPHGFQSMLYLFLPQNAHVHEVFPHRYYKHGYKRAALEWGVSYGFSMSPPRSLLSRLISRLFTTDACMRMYYCRFLARKGDVLVTDADAALIARSAVVAARASVEAEKGLQ 229          
BLAST of mRNA_P-wetherbeei_contig7359.1.1 vs. uniprot
Match: A0A7S0KFF8_MICPS (Hypothetical protein (Fragment) n=1 Tax=Micromonas pusilla TaxID=38833 RepID=A0A7S0KFF8_MICPS)

HSP 1 Score: 99.0 bits (245), Expect = 4.090e-23
Identity = 53/144 (36.81%), Postives = 80/144 (55.56%), Query Frame = 1
Query:    1 DGVVAALRTDLGPTWEISVILHSEKADPCRLYAELADADMLLTPHGFQSMLLLFLPPGAALFEIFPYKYWKEGYKPLALEWGASYEYIMSRSVTGYRGMVLFFVPQEVCMRSIHCRKFSRADDVRLEPGHLQKVVQVARRAAKE 432
            + +V AL    G  W  SV+ H E   PC L   L +AD+L+TPHGFQSML + L PGA ++E+FP++Y+K GYK  ALEWG ++   +S        ++        CM   +CR  +R  DV LE   ++ + +  R + ++
Sbjct:   30 NALVEALPGGTG-AWRHSVVTHRENLPPCLLKRCLGNADVLVTPHGFQSMLYVLLKPGAMMYEVFPHRYYKHGYKRAALEWGLAHGASLSPPRGALPTLISRAFTTRGCMSMYYCRYLARKGDVVLEARDVEAIARAVRASDRD 172          
BLAST of mRNA_P-wetherbeei_contig7359.1.1 vs. uniprot
Match: C1N2E6_MICPC (Uncharacterized protein n=1 Tax=Micromonas pusilla (strain CCMP1545) TaxID=564608 RepID=C1N2E6_MICPC)

HSP 1 Score: 104 bits (259), Expect = 4.230e-23
Identity = 57/143 (39.86%), Postives = 81/143 (56.64%), Query Frame = 1
Query:    7 VVAALRTDLGPTWEISVILHSEKADPCRLYAELADADMLLTPHGFQSMLLLFLPPGAALFEIFPYKYWKEGYKPLALEWGASYEYIMSRSVTGYRGMVLFFVPQEVCMRSIHCRKFSRADDVRLEPGHLQKVVQVARRAAKER 435
            V + +   LG  W ++V+ H +   PC L   L  A++LLTPHGFQSML LFLPP A L+E+FP++Y+K GYK  ALEWG SY + MS   +    ++        CM+  +CR  +R  +V +     +    +AR  A ER
Sbjct:  391 VASRVGAALGDDWIVTVVTHDDFLPPCLLARCLGRAELLLTPHGFQSMLYLFLPPRALLYEVFPHRYYKHGYKRAALEWGLSYGFTMSPPSSTTARVIGRTFTTNACMQMYYCRYNARKGNVSVSD---EDASAIARAVAAER 530          
BLAST of mRNA_P-wetherbeei_contig7359.1.1 vs. uniprot
Match: C1DZC0_MICCC (Uncharacterized protein n=1 Tax=Micromonas commoda (strain RCC299 / NOUM17 / CCMP2709) TaxID=296587 RepID=C1DZC0_MICCC)

HSP 1 Score: 102 bits (253), Expect = 2.590e-22
Identity = 56/148 (37.84%), Postives = 85/148 (57.43%), Query Frame = 1
Query:    1 DGVVAALRTDLGPTWEISVILHSEKADPCRLYAELADADMLLTPHGFQSMLLLFLPPGAALFEIFPYKYWKEGYKPLALEWGASYEYIMSRSVTGYRGMVLFFVPQEV----CMRSIHCRKFSRADDVRLEPGHLQKVVQVARRAAKE 432
            + +V AL    G  W  SV+ H E   PC L   L +AD+L+TPHGFQSML + L PGA ++E+FP++Y+K GYK  ALEWG ++      S++  RG +   + +      CM   +CR F+R  DV LE   ++ + +  R + ++
Sbjct:  356 NALVRALPGGTG-AWRHSVVTHHENLPPCLLKRCLGNADVLVTPHGFQSMLYILLKPGAMMYEVFPHRYYKHGYKRAALEWGLAH----GMSLSPPRGALPTLISRAFTTGGCMSMYYCRYFARKGDVALEARDVEAIARAVRASDRD 498          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig7359.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 18
Match NameE-valueIdentityDescription
D7FHW9_ECTSI8.790e-5559.73Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5L8P6_9PHAE1.420e-5459.33Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A7S2HI54_9STRA3.680e-3647.48Hypothetical protein (Fragment) n=1 Tax=Dictyocha ... [more]
A0A7S3XXH4_HETAK1.490e-2842.96Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A7S3GPP9_9STRA7.940e-2747.54Hypothetical protein n=1 Tax=Spumella elongata Tax... [more]
A0A6H5K1S1_9PHAE6.800e-2542.03Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A7S0GN44_MICPS2.430e-2439.22Hypothetical protein n=1 Tax=Micromonas pusilla Ta... [more]
A0A7S0KFF8_MICPS4.090e-2336.81Hypothetical protein (Fragment) n=1 Tax=Micromonas... [more]
C1N2E6_MICPC4.230e-2339.86Uncharacterized protein n=1 Tax=Micromonas pusilla... [more]
C1DZC0_MICCC2.590e-2237.84Uncharacterized protein n=1 Tax=Micromonas commoda... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig7359contigP-wetherbeei_contig7359:1768..3112 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog296587.XP_002499834.1
Model size456
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons3
Evalue4.24e-23
EggNOG OGs2C9EE@1|root,2SQH4@2759|Eukaryota
Ec32 ortholog descriptionGlycosyltransferase AER61, uncharacterised
Ec32 orthologEc-12_006190.1
Cds size456
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186976.1167114-CDS-P-wetherbeei_contig7359:1767..19051683186976.1167114-CDS-P-wetherbeei_contig7359:1767..1905Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig7359 1768..1905 -
1683186976.1292884-CDS-P-wetherbeei_contig7359:2309..24241683186976.1292884-CDS-P-wetherbeei_contig7359:2309..2424Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig7359 2310..2424 -
1683186976.1374857-CDS-P-wetherbeei_contig7359:2909..31121683186976.1374857-CDS-P-wetherbeei_contig7359:2909..3112Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig7359 2910..3112 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig7359.1.1prot_P-wetherbeei_contig7359.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig7359 1768..3112 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig7359.1.1

>prot_P-wetherbeei_contig7359.1.1 ID=prot_P-wetherbeei_contig7359.1.1|Name=mRNA_P-wetherbeei_contig7359.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=152bp
DGVVAALRTDLGPTWEISVILHSEKADPCRLYAELADADMLLTPHGFQSM
LLLFLPPGAALFEIFPYKYWKEGYKPLALEWGASYEYIMSRSVTGYRGMV
LFFVPQEVCMRSIHCRKFSRADDVRLEPGHLQKVVQVARRAAKERKPYLD
L*
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mRNA from alignment at P-wetherbeei_contig7359:1768..3112-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig7359.1.1 ID=mRNA_P-wetherbeei_contig7359.1.1|Name=mRNA_P-wetherbeei_contig7359.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1345bp|location=Sequence derived from alignment at P-wetherbeei_contig7359:1768..3112- (Phaeothamnion wetherbeei SAG_119_79)
GACGGCGTTGTGGCGGCTCTGCGGACAGACCTGGGACCGACCTGGGAAAT TTCCGTAATTCTGCATTCCGAAAAGGCTGACCCCTGCCGGCTCTACGCAG AGCTGGCGGACGCCGACATGCTGCTGACGCCGCACGGCTTCCAGTCGATG CTGCTGCTCTTCCTGCCGCCGGGAGCTGCGCTCTTTGAGATCTTTCCTTA CAAGTGAGTGGCAGACGGCGGAGCGTGCGTGTCTGAGGCGGTTGGATCGG GAAAGGAAACCTTTTCCCGCGCCTTGATATGCATTGCTTCGTTAGCTGAT GCGCCAGGCTGTATGATCCCGTCAGAGTCTTTGAGATTTCGCTTTTTTTG AAGGGATTCATTCGTGTTTGGAGGTGGCCTAATCTTGAAGCTCTATTCTT TCAAAGAATATGGCGGTCTGGGTCAGACTGCAGCTGTTCCTTGCTTGTCT GCCGTCGCTGGCACCTGTCTTTTCGGCGTTGAGGACCAGCGGCAGGATCG ACCTTCCTGCTGGCGCGGTTGGACCCCTCTATTCATTAGAACCTCGAACG CCGTTCGGTACTGCCGGCTGACCGACGCCGCAGCATCTTCTCGAATGATC GAAACCGCCAAATGCCGCACCAGAAACCGTCGGTCGGTCGGCTCAACTCC AGTTCTCTTTCCTCCCCATTTCCCCTCCACTTTGGAAGGTACTGGAAGGA GGGCTACAAGCCGCTGGCGCTCGAATGGGGCGCGTCGTACGAGTACATCA TGTCGCGGAGCGTCACGGGTTACCGCGGCATGGTGCTCTTCTTCGTGCCA CAGGTCCGTCCGTCTTTAGCGCTGTCTTTAGTCTAGTGTTTTGTTCTGTT ACCCTTCTTCATCGAAATGTATACGTCAGTAATGTGAAACTTAAGATTAT TTCGCGCGTGCACTTGCCCAGTGGGATTGCGAGGGGCGATATTGCGATCT TATGGTGTTTTGGAGGTGGCCTTTTATTCCAGAACACCGTTTTCAGCTTT GGGTAGGAATGGCTTCTTTGGGAAGTTTCGACAATTTGAATGGACAGCCG CTTTTCGGCCAACCTCGGTTTTCGACGCAACCCGCATACTTGTCGCATCA ATCTTGTGGCATTCTTTGCTGTTTGCAATCGCGTTTTGGCGCTCCACTTT CTGAAATCGCCGAAACCTCTCTCTTTCCTTTCTTTTTTTACGCCGGCCGC GGCATAGGAGGTGTGCATGCGGAGCATCCACTGCCGAAAGTTCAGCCGCG CCGATGATGTGCGGCTCGAGCCGGGCCATCTCCAGAAGGTCGTGCAGGTG GCGCGACGCGCCGCCAAGGAGCGGAAGCCTTACCTGGACCTGTGA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig7359:1768..3112-

>mRNA_P-wetherbeei_contig7359.1.1 ID=mRNA_P-wetherbeei_contig7359.1.1|Name=mRNA_P-wetherbeei_contig7359.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=456bp|location=Sequence derived from alignment at P-wetherbeei_contig7359:1768..3112- (Phaeothamnion wetherbeei SAG_119_79)
GACGGCGTTGTGGCGGCTCTGCGGACAGACCTGGGACCGACCTGGGAAAT
TTCCGTAATTCTGCATTCCGAAAAGGCTGACCCCTGCCGGCTCTACGCAG
AGCTGGCGGACGCCGACATGCTGCTGACGCCGCACGGCTTCCAGTCGATG
CTGCTGCTCTTCCTGCCGCCGGGAGCTGCGCTCTTTGAGATCTTTCCTTA
CAAGTACTGGAAGGAGGGCTACAAGCCGCTGGCGCTCGAATGGGGCGCGT
CGTACGAGTACATCATGTCGCGGAGCGTCACGGGTTACCGCGGCATGGTG
CTCTTCTTCGTGCCACAGGAGGTGTGCATGCGGAGCATCCACTGCCGAAA
GTTCAGCCGCGCCGATGATGTGCGGCTCGAGCCGGGCCATCTCCAGAAGG
TCGTGCAGGTGGCGCGACGCGCCGCCAAGGAGCGGAAGCCTTACCTGGAC
CTGTGA
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