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Homology
BLAST of mRNA_P-wetherbeei_contig7358.1.1 vs. uniprot
Match: D8LF16_ECTSI (PDZ domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LF16_ECTSI) HSP 1 Score: 88.6 bits (218), Expect = 5.740e-14 Identity = 83/297 (27.95%), Postives = 114/297 (38.38%), Query Frame = 2
Query: 386 CLLLSALRQLFRWNPAVAATLCARHFPDVRPWCVWQAVYDAPQWAITPAAPAAPVVASAGRHGSPRHMASPVRGGAAATVPGAPAAXXXXXXXXXXXXXGAAREPSKLRKDAMFHAYLSTLLESHGEACRRDRHVVHRCLELSLQIAARLRAAMAG----GASQAAATAFTGDRSAVTAVIEADAVFCERALKFPAIALAPTG------------------GGGCSDPAAVARF----------------YLAEVDATIALWVVDPAGINLDPLWLLSCVQSHGHWPALLPLAEALA 1162
CLLL+ LR+LFRW+ A AA +CA FP VRPW V A++ T + P PV R+ + A P G A R DA FHAYL +L H CR D V+ RCL+LSL+++ +LR+ + +AA F R A D E ++ P A + G G G P R Y V+ ++ W LDPLWLL +++H +WP + A+A
Sbjct: 1059 CLLLNNLRELFRWDVAAAAEMCADAFPGVRPWNVHHALHRDQDKPWTTSEPVTPVGGGTARY---QAQAPPAGAGVA-----------------------GGDGDGGTRTDAAFHAYLWAVLRKHPGECRGDWKVIQRCLQLSLRLSTKLRSLPSDHPLHSFCKAATRNFKRRRRAD------DPATRETGVRHPEGAFSTDGRGQFHNSRRWRAGGGSGGGSGMRTPTGDLRLGVEDSGETGDGSAWRRYSDVVEELVSQWCKHGDAFGLDPLWLLPKLRAHKNWPVAFRICGAIA 1323
BLAST of mRNA_P-wetherbeei_contig7358.1.1 vs. uniprot
Match: A0A6H5JMZ7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JMZ7_9PHAE) HSP 1 Score: 84.7 bits (208), Expect = 7.800e-13 Identity = 82/294 (27.89%), Postives = 115/294 (39.12%), Query Frame = 2
Query: 386 CLLLSALRQLFRWNPAVAATLCARHFPDVRPWCVWQAVYDAPQWAITPAAPAAPVVASAGRHGSPRHMASPVRGGAAATVPGAPAAXXXXXXXXXXXXXGAAREPSK--LRKDAMFHAYLSTLLESHGEACRRDRHVVHRCLELSLQIAARLRAAMAGGASQAAATAFTGDRSAVTAVIEADAVFCERALKFPAIALAPTG----------------GGGC------------------SDPAAVARFYLAEVDATIALWVVDPAGINLDPLWLLSCVQSHGHWPALLPLAEAL 1159
CLLL+ L +LFRW+ A AA +CA FP VRPW V A++ T + P +PV GG+A AP A G AR R DA FHAYL +L H CR D V+ RCL+LSL+++ +LR+ + T R+ D E ++ P + G GGG +D + R Y V+ ++ W LDPLWLL +++H +WP + A+
Sbjct: 528 CLLLNNLGELFRWDVAAAAEMCADAFPGVRPWNVHHALHRDQDKPWTTSEPV-----------------TPVEGGSARYQTHAPPAGA-----------GVARGDGDGGTRTDAAFHAYLWAVLRKHPGECRGDWKVIQRCLQLSLRLSTKLRSLPSDHPLHNFCKVAT--RNLKRRQRADDPATREAGVRHPEGGFSTDGRGQFHNSRRWRAGGGSGGGSGMRTPTGDLRLGVEDSGETDDGSAWRRYSDVVEEVVSQWCKHGDAFGLDPLWLLPKLRAHKNWPVAFRICGAI 791
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
| Stop | 1 |
| Start | 1 |
| Model size | 3111 |
| Hectar predicted targeting category | other localisation |
| Exons | 1 |
| Cds size | 2955 |
Relationships
The following UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
| 1683186976.0754035-UTR-P-wetherbeei_contig7358:1..90 | 1683186976.0754035-UTR-P-wetherbeei_contig7358:1..90 | Phaeothamnion wetherbeei SAG_119_79 | UTR | P-wetherbeei_contig7358 2..90 - |
| 1683186976.0929043-UTR-P-wetherbeei_contig7358:3045..3112 | 1683186976.0929043-UTR-P-wetherbeei_contig7358:3045..3112 | Phaeothamnion wetherbeei SAG_119_79 | UTR | P-wetherbeei_contig7358 3046..3112 - |
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
| 1683186976.0844576-CDS-P-wetherbeei_contig7358:90..3045 | 1683186976.0844576-CDS-P-wetherbeei_contig7358:90..3045 | Phaeothamnion wetherbeei SAG_119_79 | CDS | P-wetherbeei_contig7358 91..3045 - |
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-wetherbeei_contig7358.1.1 >prot_P-wetherbeei_contig7358.1.1 ID=prot_P-wetherbeei_contig7358.1.1|Name=mRNA_P-wetherbeei_contig7358.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=985bp
MELAALLSGPSTSRPLAKAVLDLFGGNDASGGGGGRGRGDGSSSDGAGGG GGGGKGGGRGAASSSSRGRRGSGKEVGRSRSRSGSGGAGSGKEQHGTARP PPPLPLCLLLSALRQLFRWNPAVAATLCARHFPDVRPWCVWQAVYDAPQW AITPAAPAAPVVASAGRHGSPRHMASPVRGGAAATVPGAPAAGARGGGSG GGGGNGAAREPSKLRKDAMFHAYLSTLLESHGEACRRDRHVVHRCLELSL QIAARLRAAMAGGASQAAATAFTGDRSAVTAVIEADAVFCERALKFPAIA LAPTGGGGCSDPAAVARFYLAEVDATIALWVVDPAGINLDPLWLLSCVQS HGHWPALLPLAEALAAGAAGTESNVTGAESVASLSAVARPNGVAAADVPL GGTSAAAGATQLPTPHLGVALAALDVAADAALRDADDALLADVLTSIWRA ETLAAAAAAVPVVVGAPTGVAVTRGGEAASKAAMATATAASPAAAPPAAT AAATTITGKPAMAKAAAAKAAVSSAAGTGKAAAMKTAKAAAAVAMPQPAA PAPAPAPATAAATPAIAAAPPHPTLLETGSVGPRLVSCIERLLGGGTALA VRDGGSAQQPLTAAPAASAAAAVAASAAPLVAGACLAGLGAPLTLMLLEF VPRLLELLPAAFFAELAGAAEAARRQARAAVALRAAATSALWAGRGGVDP VSPQLTWLAVEELVSSLHEKGQVPGAAAAAAATTRQGARNSGTGSGVADE GHSGGSAGGANRRDEVEKVASGVPGHRRASSDRAEVDTPEVTALHGGWQS LEGNRAREGGGGSGGGGGGTGNGGGGGGTGGGGRGGGSGGGGFDSVGLVG GSRSDSRVGDKGKDPFAVAIALGLNLMAPGGRPWGTHVPAGTNCFACTLP LAGPAGSGVGGDDRGGRNDGAAAATAATEAADSGGGDSRRIVLPCGHGYH LECVMPSEHEQLAASCPRCLEEWVAGADAAAKGW* back to topmRNA from alignment at P-wetherbeei_contig7358:2..3112- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_P-wetherbeei_contig7358.1.1 ID=mRNA_P-wetherbeei_contig7358.1.1|Name=mRNA_P-wetherbeei_contig7358.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=3111bp|location=Sequence derived from alignment at P-wetherbeei_contig7358:2..3112- (Phaeothamnion wetherbeei SAG_119_79) ATGGGCGGCACCGCTCGCCGGGGCGGTGGCGGCGGCGGCGCGCCATCCGG
GCCATGCGCGGGCGCGAATGGAGCTGGCAGCGCTGCTGTCAGGGCCGTCG
ACCAGCCGCCCGCTGGCCAAGGCGGTGCTGGACCTGTTTGGCGGGAACGA
CGCGAGCGGCGGCGGCGGCGGCCGCGGAAGGGGCGATGGCAGTAGCAGCG
ATGGTGCTGGCGGCGGCGGCGGCGGCGGTAAAGGCGGTGGCCGCGGCGCT
GCTAGCAGCAGCTCCAGAGGCCGCCGCGGGAGCGGAAAAGAAGTTGGCCG
CAGCCGCAGCAGGAGCGGGAGCGGCGGCGCCGGCAGTGGCAAGGAGCAGC
ACGGAACGGCGCGCCCGCCGCCGCCGCTGCCGCTGTGCCTCCTGCTGTCG
GCGCTCCGACAGCTCTTTCGGTGGAACCCGGCGGTGGCAGCGACGCTCTG
CGCCCGCCACTTCCCCGACGTGCGCCCGTGGTGCGTGTGGCAGGCCGTGT
ACGACGCGCCGCAGTGGGCTATCACACCTGCTGCGCCCGCGGCGCCGGTC
GTCGCATCGGCCGGAAGGCATGGCTCTCCCCGCCACATGGCCTCGCCGGT
CAGGGGCGGCGCCGCCGCGACGGTGCCGGGAGCGCCCGCGGCTGGCGCAA
GGGGTGGTGGTAGTGGCGGCGGCGGCGGCAACGGCGCGGCGCGGGAGCCC
AGCAAGCTGCGAAAGGACGCCATGTTCCACGCTTACCTCTCCACGCTGCT
GGAATCGCACGGCGAAGCATGCCGCCGGGACCGCCACGTCGTGCACCGCT
GCCTCGAGCTCTCCCTGCAGATCGCTGCCCGCCTCCGGGCGGCTATGGCG
GGCGGCGCGAGCCAGGCAGCAGCCACAGCCTTCACCGGTGACAGAAGTGC
TGTCACGGCGGTAATAGAGGCGGACGCAGTCTTCTGCGAGCGCGCCTTGA
AGTTCCCTGCGATAGCTCTTGCCCCCACCGGTGGTGGCGGGTGTTCCGAC
CCGGCCGCGGTGGCGAGGTTTTACCTCGCAGAGGTGGACGCTACGATAGC
GCTGTGGGTTGTAGATCCGGCGGGCATCAACCTCGATCCGCTGTGGCTGC
TATCCTGCGTGCAATCACACGGCCATTGGCCAGCATTGCTTCCTTTGGCA
GAGGCGCTGGCAGCGGGCGCCGCTGGTACGGAGTCGAATGTAACAGGTGC
AGAGTCGGTAGCGTCATTGTCAGCGGTGGCCAGGCCGAATGGCGTGGCGG
CAGCAGACGTGCCGCTCGGCGGCACCTCAGCGGCCGCCGGTGCCACACAG
CTGCCCACGCCGCACTTAGGAGTCGCTCTTGCGGCCCTTGATGTGGCGGC
AGATGCGGCGCTCCGGGATGCGGACGACGCCTTGTTGGCGGACGTTCTTA
CATCCATTTGGCGCGCTGAAACGTTGGCGGCGGCAGCAGCCGCGGTACCA
GTAGTGGTGGGCGCGCCGACGGGAGTAGCGGTTACGCGAGGAGGGGAGGC
AGCATCAAAGGCAGCGATGGCGACAGCGACGGCGGCATCTCCAGCGGCGG
CACCTCCTGCAGCGACGGCTGCGGCCACGACTATAACGGGCAAGCCAGCA
ATGGCAAAGGCAGCAGCGGCGAAGGCGGCGGTTAGCTCGGCGGCAGGGAC
TGGAAAAGCGGCGGCCATGAAGACCGCAAAGGCAGCGGCAGCAGTAGCTA
TGCCGCAACCGGCAGCGCCGGCGCCGGCACCGGCGCCAGCGACAGCAGCT
GCAACGCCGGCCATTGCTGCTGCCCCGCCCCATCCGACACTTCTGGAGAC
GGGCTCGGTCGGTCCTCGGCTGGTCTCCTGCATCGAGCGGTTGTTGGGGG
GTGGCACGGCCCTCGCCGTCCGTGATGGTGGCAGCGCGCAGCAGCCGCTG
ACGGCGGCACCGGCTGCTTCGGCGGCGGCGGCGGTGGCGGCGTCAGCAGC
GCCTCTCGTAGCGGGCGCCTGCCTCGCCGGGCTGGGGGCGCCGCTGACCC
TGATGCTGCTAGAGTTCGTTCCCCGGCTGCTGGAGCTGCTGCCTGCCGCC
TTCTTCGCCGAGCTGGCGGGGGCTGCGGAGGCGGCTCGACGGCAGGCGAG
GGCGGCGGTGGCTCTGCGGGCAGCGGCGACGTCGGCTCTGTGGGCCGGGC
GGGGCGGCGTCGACCCGGTGAGTCCGCAGCTCACGTGGCTGGCAGTAGAA
GAGCTTGTTTCGAGCTTGCATGAAAAAGGTCAAGTTCCGGGGGCGGCGGC
GGCGGCGGCGGCGACGACAAGGCAAGGCGCTCGAAACAGTGGCACGGGCA
GCGGCGTCGCCGATGAAGGCCACAGCGGTGGCAGCGCTGGCGGTGCCAAT
AGACGGGATGAGGTTGAAAAAGTAGCGAGCGGGGTGCCAGGCCACCGGCG
CGCCAGCAGCGACAGGGCCGAAGTCGATACGCCGGAAGTAACGGCTCTGC
ATGGGGGCTGGCAGAGTTTGGAGGGCAATCGGGCGCGTGAGGGAGGCGGG
GGCAGCGGCGGCGGCGGAGGAGGGACCGGCAACGGCGGCGGAGGAGGAGG
GACCGGCGGCGGTGGCAGAGGAGGAGGGAGCGGCGGCGGCGGCTTCGATA
GCGTCGGCCTTGTCGGCGGCAGCCGCTCCGACAGCCGCGTTGGCGACAAA
GGGAAAGACCCGTTTGCCGTCGCTATCGCGCTTGGTCTGAACTTGATGGC
ACCGGGGGGCAGGCCCTGGGGTACGCACGTTCCCGCGGGGACTAATTGCT
TTGCCTGCACCCTGCCGCTGGCTGGACCGGCCGGCAGCGGAGTTGGCGGA
GACGACCGCGGCGGCCGCAACGATGGCGCCGCCGCTGCGACGGCAGCGAC
AGAAGCGGCGGATTCTGGAGGAGGTGACAGCAGGCGCATCGTCCTGCCGT
GCGGCCACGGTTACCACTTGGAGTGCGTCATGCCGTCGGAGCACGAGCAG
CTGGCGGCTTCGTGCCCGCGGTGCCTCGAGGAATGGGTGGCCGGCGCCGA
CGCCGCCGCCAAGGGATGGTGACAGCGGCAGCGGCTTTGCAGCCCGGCAC
GACGTGGTGCCGGCGGCGCCGTCTGGTTATGTGGCGCTGCGCGGGATGTC
TTTGCAGCGCT back to topCoding sequence (CDS) from alignment at P-wetherbeei_contig7358:2..3112- >mRNA_P-wetherbeei_contig7358.1.1 ID=mRNA_P-wetherbeei_contig7358.1.1|Name=mRNA_P-wetherbeei_contig7358.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=2955bp|location=Sequence derived from alignment at P-wetherbeei_contig7358:2..3112- (Phaeothamnion wetherbeei SAG_119_79) ATGGAGCTGGCAGCGCTGCTGTCAGGGCCGTCGACCAGCCGCCCGCTGGC CAAGGCGGTGCTGGACCTGTTTGGCGGGAACGACGCGAGCGGCGGCGGCG GCGGCCGCGGAAGGGGCGATGGCAGTAGCAGCGATGGTGCTGGCGGCGGC GGCGGCGGCGGTAAAGGCGGTGGCCGCGGCGCTGCTAGCAGCAGCTCCAG AGGCCGCCGCGGGAGCGGAAAAGAAGTTGGCCGCAGCCGCAGCAGGAGCG GGAGCGGCGGCGCCGGCAGTGGCAAGGAGCAGCACGGAACGGCGCGCCCG CCGCCGCCGCTGCCGCTGTGCCTCCTGCTGTCGGCGCTCCGACAGCTCTT TCGGTGGAACCCGGCGGTGGCAGCGACGCTCTGCGCCCGCCACTTCCCCG ACGTGCGCCCGTGGTGCGTGTGGCAGGCCGTGTACGACGCGCCGCAGTGG GCTATCACACCTGCTGCGCCCGCGGCGCCGGTCGTCGCATCGGCCGGAAG GCATGGCTCTCCCCGCCACATGGCCTCGCCGGTCAGGGGCGGCGCCGCCG CGACGGTGCCGGGAGCGCCCGCGGCTGGCGCAAGGGGTGGTGGTAGTGGC GGCGGCGGCGGCAACGGCGCGGCGCGGGAGCCCAGCAAGCTGCGAAAGGA CGCCATGTTCCACGCTTACCTCTCCACGCTGCTGGAATCGCACGGCGAAG CATGCCGCCGGGACCGCCACGTCGTGCACCGCTGCCTCGAGCTCTCCCTG CAGATCGCTGCCCGCCTCCGGGCGGCTATGGCGGGCGGCGCGAGCCAGGC AGCAGCCACAGCCTTCACCGGTGACAGAAGTGCTGTCACGGCGGTAATAG AGGCGGACGCAGTCTTCTGCGAGCGCGCCTTGAAGTTCCCTGCGATAGCT CTTGCCCCCACCGGTGGTGGCGGGTGTTCCGACCCGGCCGCGGTGGCGAG GTTTTACCTCGCAGAGGTGGACGCTACGATAGCGCTGTGGGTTGTAGATC CGGCGGGCATCAACCTCGATCCGCTGTGGCTGCTATCCTGCGTGCAATCA CACGGCCATTGGCCAGCATTGCTTCCTTTGGCAGAGGCGCTGGCAGCGGG CGCCGCTGGTACGGAGTCGAATGTAACAGGTGCAGAGTCGGTAGCGTCAT TGTCAGCGGTGGCCAGGCCGAATGGCGTGGCGGCAGCAGACGTGCCGCTC GGCGGCACCTCAGCGGCCGCCGGTGCCACACAGCTGCCCACGCCGCACTT AGGAGTCGCTCTTGCGGCCCTTGATGTGGCGGCAGATGCGGCGCTCCGGG ATGCGGACGACGCCTTGTTGGCGGACGTTCTTACATCCATTTGGCGCGCT GAAACGTTGGCGGCGGCAGCAGCCGCGGTACCAGTAGTGGTGGGCGCGCC GACGGGAGTAGCGGTTACGCGAGGAGGGGAGGCAGCATCAAAGGCAGCGA TGGCGACAGCGACGGCGGCATCTCCAGCGGCGGCACCTCCTGCAGCGACG GCTGCGGCCACGACTATAACGGGCAAGCCAGCAATGGCAAAGGCAGCAGC GGCGAAGGCGGCGGTTAGCTCGGCGGCAGGGACTGGAAAAGCGGCGGCCA TGAAGACCGCAAAGGCAGCGGCAGCAGTAGCTATGCCGCAACCGGCAGCG CCGGCGCCGGCACCGGCGCCAGCGACAGCAGCTGCAACGCCGGCCATTGC TGCTGCCCCGCCCCATCCGACACTTCTGGAGACGGGCTCGGTCGGTCCTC GGCTGGTCTCCTGCATCGAGCGGTTGTTGGGGGGTGGCACGGCCCTCGCC GTCCGTGATGGTGGCAGCGCGCAGCAGCCGCTGACGGCGGCACCGGCTGC TTCGGCGGCGGCGGCGGTGGCGGCGTCAGCAGCGCCTCTCGTAGCGGGCG CCTGCCTCGCCGGGCTGGGGGCGCCGCTGACCCTGATGCTGCTAGAGTTC GTTCCCCGGCTGCTGGAGCTGCTGCCTGCCGCCTTCTTCGCCGAGCTGGC GGGGGCTGCGGAGGCGGCTCGACGGCAGGCGAGGGCGGCGGTGGCTCTGC GGGCAGCGGCGACGTCGGCTCTGTGGGCCGGGCGGGGCGGCGTCGACCCG GTGAGTCCGCAGCTCACGTGGCTGGCAGTAGAAGAGCTTGTTTCGAGCTT GCATGAAAAAGGTCAAGTTCCGGGGGCGGCGGCGGCGGCGGCGGCGACGA CAAGGCAAGGCGCTCGAAACAGTGGCACGGGCAGCGGCGTCGCCGATGAA GGCCACAGCGGTGGCAGCGCTGGCGGTGCCAATAGACGGGATGAGGTTGA AAAAGTAGCGAGCGGGGTGCCAGGCCACCGGCGCGCCAGCAGCGACAGGG CCGAAGTCGATACGCCGGAAGTAACGGCTCTGCATGGGGGCTGGCAGAGT TTGGAGGGCAATCGGGCGCGTGAGGGAGGCGGGGGCAGCGGCGGCGGCGG AGGAGGGACCGGCAACGGCGGCGGAGGAGGAGGGACCGGCGGCGGTGGCA GAGGAGGAGGGAGCGGCGGCGGCGGCTTCGATAGCGTCGGCCTTGTCGGC GGCAGCCGCTCCGACAGCCGCGTTGGCGACAAAGGGAAAGACCCGTTTGC CGTCGCTATCGCGCTTGGTCTGAACTTGATGGCACCGGGGGGCAGGCCCT GGGGTACGCACGTTCCCGCGGGGACTAATTGCTTTGCCTGCACCCTGCCG CTGGCTGGACCGGCCGGCAGCGGAGTTGGCGGAGACGACCGCGGCGGCCG CAACGATGGCGCCGCCGCTGCGACGGCAGCGACAGAAGCGGCGGATTCTG GAGGAGGTGACAGCAGGCGCATCGTCCTGCCGTGCGGCCACGGTTACCAC TTGGAGTGCGTCATGCCGTCGGAGCACGAGCAGCTGGCGGCTTCGTGCCC GCGGTGCCTCGAGGAATGGGTGGCCGGCGCCGACGCCGCCGCCAAGGGAT GGTGA back to top
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