mRNA_P-wetherbeei_contig7353.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig7353.1.1
Unique NamemRNA_P-wetherbeei_contig7353.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig7353.1.1 vs. uniprot
Match: A0A812RLQ6_9DINO (Calmodulin n=1 Tax=Symbiodinium sp. CCMP2456 TaxID=1519616 RepID=A0A812RLQ6_9DINO)

HSP 1 Score: 146 bits (368), Expect = 1.690e-35
Identity = 86/222 (38.74%), Postives = 119/222 (53.60%), Query Frame = 1
Query:   76 FICAGGGSSGSGAGCGDASPNPCTSNQYKFSDANGWTINMPKSTAIGKLPYRAFAYLPFCHGSPMSSCWDGSAHDFKFSFKPDGFNGWGIYTKLLFWTDSLNILGILPRGAPGATGHSLPGNVNLVVMPTTDYPNDWAKVIPLTDGTWYNVVITVTRNSGMLFNEITVNGVTMVTNYQSTTNLDGDANGAQLGMYTFDFGQNTWGATQMAKLSLRDLSFKKV 741
            +I AGGG   SG   G +   PCTS QY F +   W I+  K  A+G +PYRAFAY  FC+G   S CW   A  F FS    G +  G Y K+LFWTDS NILG++P   P   G      + LV   T DYPN W   + +++ TWY++ +    ++G    EI+VNGV + +      N+     G Q+G+Y+FD+G  +W   +   LSL D+   +V
Sbjct: 3316 WISAGGGPGTSG---GFSGAGPCTSGQYNFQEDGSWHISAGKEDALGVMPYRAFAYAQFCNGKAYSECWTTGAAAFSFSLMVRGVSQTGAYVKVLFWTDSGNILGLVPPSHPKGEG-----KLRLVAFMTDDYPNSWDFELEISESTWYHIQVAFQASTGAA--EISVNGVVLGSG-TLPVNMLAATTGPQIGIYSFDYG-TSW-PDEGVVLSLADVCIGEV 3524          
BLAST of mRNA_P-wetherbeei_contig7353.1.1 vs. uniprot
Match: A0A812SFT0_9DINO (PDPK2 protein n=1 Tax=Symbiodinium necroappetens TaxID=1628268 RepID=A0A812SFT0_9DINO)

HSP 1 Score: 140 bits (353), Expect = 3.730e-34
Identity = 85/225 (37.78%), Postives = 120/225 (53.33%), Query Frame = 1
Query:   76 FICAGGGSSGSGAGCGDASPNPCTSNQYKFSDANGWTINMPKSTAIGKLPYRAFAYLPFCHGSPMSSCWDGSAHDFKFSFKPDGFNGWGIYTKLLFWTDSLNILGILPRGAPGATGHSLPGNVNLVVMPTTDYPNDWAKVIPLTDGTWYNVVITVTRNSGMLFNEITVNGVTMVTNYQSTTNLDGDANGAQLGMYTFDFGQNTWGATQMAKLSLRDLSFKKVGSA 750
            +I AGGG   SG   G +   PCTS QY F +   W I +    A+G +PYRAFAY  FC+G   S CW   A  F FS    G +  G + K+LFWTDS NILG++P   P   G      + LV   T DYPN W   + +++ TWY++ +    ++G    EI+VNGV + +      N+     G Q+G+Y+FD+G  +W A  +  LSL D+   +V  +
Sbjct:  302 WISAGGGPGTSG---GFSGAGPCTSGQYNFQEDGSWHI-LAGQEALGVMPYRAFAYAQFCNGKAYSECWTTGAAAFSFSLMVRGVSQTGAFVKVLFWTDSGNILGLVPPSHPKGEG-----KLRLVAFMTDDYPNSWDFELEISESTWYHIQVAFQASTGAA--EISVNGVVLGSG-TLPVNMLAATTGPQIGIYSFDYG-TSWPAEGVV-LSLADVCIGEVAGS 512          
BLAST of mRNA_P-wetherbeei_contig7353.1.1 vs. uniprot
Match: A0A813AUL7_SYMMI (PDPK2 protein n=2 Tax=Symbiodinium TaxID=2949 RepID=A0A813AUL7_SYMMI)

HSP 1 Score: 140 bits (353), Expect = 5.180e-34
Identity = 85/225 (37.78%), Postives = 120/225 (53.33%), Query Frame = 1
Query:   76 FICAGGGSSGSGAGCGDASPNPCTSNQYKFSDANGWTINMPKSTAIGKLPYRAFAYLPFCHGSPMSSCWDGSAHDFKFSFKPDGFNGWGIYTKLLFWTDSLNILGILPRGAPGATGHSLPGNVNLVVMPTTDYPNDWAKVIPLTDGTWYNVVITVTRNSGMLFNEITVNGVTMVTNYQSTTNLDGDANGAQLGMYTFDFGQNTWGATQMAKLSLRDLSFKKVGSA 750
            +I AGGG   SG   G +   PCTS QY F +   W I +    A+G +PYRAFAY  FC+G   S CW   A  F FS    G +  G + K+LFWTDS NILG++P   P   G      + LV   T DYPN W   + +++ TWY++ +    ++G    EI+VNGV + +      N+     G Q+G+Y+FD+G  +W A  +  LSL D+   +V  +
Sbjct:  244 WISAGGGPGTSG---GFSGAGPCTSGQYNFQEDGSWHI-LAGQEALGVMPYRAFAYAQFCNGKAYSECWTTGAAAFSFSLMVRGVSQTGAFVKVLFWTDSGNILGLVPPSHPKGEG-----KLRLVAFMTDDYPNSWDFELEISESTWYHIQVAFQASTGAA--EISVNGVVLGSG-TLPVNMLAATTGPQIGIYSFDYG-TSWPAEGVV-LSLADVCIGEVAGS 454          
BLAST of mRNA_P-wetherbeei_contig7353.1.1 vs. uniprot
Match: A0A1Q9DAN7_SYMMI (3-phosphoinositide-dependent protein kinase 2 n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A1Q9DAN7_SYMMI)

HSP 1 Score: 140 bits (353), Expect = 1.650e-33
Identity = 85/225 (37.78%), Postives = 120/225 (53.33%), Query Frame = 1
Query:   76 FICAGGGSSGSGAGCGDASPNPCTSNQYKFSDANGWTINMPKSTAIGKLPYRAFAYLPFCHGSPMSSCWDGSAHDFKFSFKPDGFNGWGIYTKLLFWTDSLNILGILPRGAPGATGHSLPGNVNLVVMPTTDYPNDWAKVIPLTDGTWYNVVITVTRNSGMLFNEITVNGVTMVTNYQSTTNLDGDANGAQLGMYTFDFGQNTWGATQMAKLSLRDLSFKKVGSA 750
            +I AGGG   SG   G +   PCTS QY F +   W I +    A+G +PYRAFAY  FC+G   S CW   A  F FS    G +  G + K+LFWTDS NILG++P   P   G      + LV   T DYPN W   + +++ TWY++ +    ++G    EI+VNGV + +      N+     G Q+G+Y+FD+G  +W A  +  LSL D+   +V  +
Sbjct: 2202 WISAGGGPGTSG---GFSGAGPCTSGQYNFQEDGSWHI-LAGQEALGVMPYRAFAYAQFCNGKAYSECWTTGAAAFSFSLMVRGVSQTGAFVKVLFWTDSGNILGLVPPSHPKGEG-----KLRLVAFMTDDYPNSWDFELEISESTWYHIQVAFQASTGAA--EISVNGVVLGSG-TLPVNMLAATTGPQIGIYSFDYG-TSWPAEGVV-LSLADVCIGEVAGS 2412          
BLAST of mRNA_P-wetherbeei_contig7353.1.1 vs. uniprot
Match: A0A812KFJ1_9DINO (IREH1 protein n=1 Tax=Symbiodinium sp. CCMP2592 TaxID=631055 RepID=A0A812KFJ1_9DINO)

HSP 1 Score: 138 bits (347), Expect = 1.010e-32
Identity = 78/209 (37.32%), Postives = 110/209 (52.63%), Query Frame = 1
Query:   76 FICAGGGSSGSGAGCGDASPNPCTSNQYKFSDANGWTINMPKSTAIGKLPYRAFAYLPFCHGSPMSSCWDGSAHDFKFSFKPDGFNGWGIYTKLLFWTDSLNILGILPRGAPGATGHSLPGNVNLVVMPTTDYPNDWAKVIPLTDGTWYNVVITVTRNSGMLFNEITVNGVTMVTNYQSTTNLDGDANGAQLGMYTFDFGQNTWGATQM 702
            +I AGGG   SG   G +   PCTS QY F +   W I   +  A+G +PYRAFAY  FC+G   S CW      F FS    G +  G + K+LFWTDS NILG++P   P   G      + LV   T DYPN W   + +++ TWY++ +    ++G    E++VNGV + +      N+     G Q+G+Y+FD+G +    T M
Sbjct:  368 WISAGGGPGTSG---GFSGAGPCTSGQYNFQEDGSWHILAGQEDALGVMPYRAFAYAQFCNGKAYSECWTTGEAAFSFSLMVRGVSQTGAFVKVLFWTDSGNILGLVPPSHPKGEG-----KLRLVAFMTDDYPNSWDFELEISESTWYHIQVAFQASTGAA--EVSVNGVVLGSG-TLPVNMLAATTGPQIGIYSFDYGTSWPAVTSM 565          
BLAST of mRNA_P-wetherbeei_contig7353.1.1 vs. uniprot
Match: A0A812IPY9_9DINO (EglS protein n=1 Tax=Symbiodinium natans TaxID=878477 RepID=A0A812IPY9_9DINO)

HSP 1 Score: 66.2 bits (160), Expect = 6.000e-10
Identity = 41/109 (37.61%), Postives = 59/109 (54.13%), Query Frame = 1
Query:  346 YTKLLFWTDSLNILGILPRGAPGATGHSLPGNVNLVVMPTTDYPNDWAKVIPLTDGTWYNVVITVTRNSGMLFNEITVNGVTMVTNYQSTTNLDGDANGAQLGMYTFDF 672
            + KLLFWTDS NILG++P   P  +G      + LV   T DYPN W   + + D  WY+V  TVT   G    E+ + GV   +      N+   ++G QLG+Y+F++
Sbjct:    5 FVKLLFWTDSGNILGLVPPSHPKGSG-----KLRLVSFITDDYPNSWQDEMEVEDDAWYHV--TVTFRPGNSAVELKLQGVQFSSGV-IPVNMLAMSSGPQLGVYSFEY 105          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig7353.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
A0A812RLQ6_9DINO1.690e-3538.74Calmodulin n=1 Tax=Symbiodinium sp. CCMP2456 TaxID... [more]
A0A812SFT0_9DINO3.730e-3437.78PDPK2 protein n=1 Tax=Symbiodinium necroappetens T... [more]
A0A813AUL7_SYMMI5.180e-3437.78PDPK2 protein n=2 Tax=Symbiodinium TaxID=2949 RepI... [more]
A0A1Q9DAN7_SYMMI1.650e-3337.783-phosphoinositide-dependent protein kinase 2 n=1 ... [more]
A0A812KFJ1_9DINO1.010e-3237.32IREH1 protein n=1 Tax=Symbiodinium sp. CCMP2592 Ta... [more]
A0A812IPY9_9DINO6.000e-1037.61EglS protein n=1 Tax=Symbiodinium natans TaxID=878... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig7353contigP-wetherbeei_contig7353:874..2098 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size910
Hectar predicted targeting categoryother localisation
Exons3
Cds size909
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186975.8583395-CDS-P-wetherbeei_contig7353:874..14591683186975.8583395-CDS-P-wetherbeei_contig7353:874..1459Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig7353 875..1459 -
1683186975.8689477-CDS-P-wetherbeei_contig7353:1651..19441683186975.8689477-CDS-P-wetherbeei_contig7353:1651..1944Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig7353 1652..1944 -
1683186975.8790472-CDS-P-wetherbeei_contig7353:2067..20981683186975.8790472-CDS-P-wetherbeei_contig7353:2067..2098Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig7353 2068..2098 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig7353.1.1prot_P-wetherbeei_contig7353.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig7353 875..2098 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig7353.1.1

>prot_P-wetherbeei_contig7353.1.1 ID=prot_P-wetherbeei_contig7353.1.1|Name=mRNA_P-wetherbeei_contig7353.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=303bp
GSTDVFVGNAEFCNTCGVFQVPDCDFICAGGGSSGSGAGCGDASPNPCTS
NQYKFSDANGWTINMPKSTAIGKLPYRAFAYLPFCHGSPMSSCWDGSAHD
FKFSFKPDGFNGWGIYTKLLFWTDSLNILGILPRGAPGATGHSLPGNVNL
VVMPTTDYPNDWAKVIPLTDGTWYNVVITVTRNSGMLFNEITVNGVTMVT
NYQSTTNLDGDANGAQLGMYTFDFGQNTWGATQMAKLSLRDLSFKKVGSA
PSPTPNVSTRQPTRRPTAKATHQPTAKAPSPTPKATHKPTKRLDAPTPKH
TPP
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mRNA from alignment at P-wetherbeei_contig7353:874..2098-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig7353.1.1 ID=mRNA_P-wetherbeei_contig7353.1.1|Name=mRNA_P-wetherbeei_contig7353.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1225bp|location=Sequence derived from alignment at P-wetherbeei_contig7353:874..2098- (Phaeothamnion wetherbeei SAG_119_79)
GGTAGCACTGATGTCTTCGTCGGTAACGCAGGTGAACTCTTAGGAATTCT TCTGAAAAGGAAATTCTGTCGTTCTCATCGAAATCGATCACTACTGTACA TCGCTAACCGGACCAGATGGGCGAATGCGTCGTTCGATTCTCTTCTCTCT CCAGAGTTCTGCAACACTTGCGGCGTCTTTCAAGTACCGGACTGTGACTT CATTTGCGCCGGCGGGGGCAGTAGCGGCAGCGGTGCTGGCTGCGGCGATG CATCCCCAAACCCATGCACGTCGAACCAGTACAAGTTCTCGGACGCGAAC GGTTGGACCATCAACATGCCCAAGTCGACAGCGATCGGCAAGCTTCCTTA CCGCGCTTTCGCCTACCTGCCCTTCTGCCATGGCTCGCCGATGTCGAGCT GCTGGGACGGGAGCGCACACGACTTCAAGTTTTCCTTCAAGCCGGATGTG AGGCAGCCCGTCAAATGTTGGCGCCCTTCTCGCCTGCTGTCTGCGTTCGC TTGGTGAAAGCTTTCCCTTATGAGGAGCTTCAAGGACGGGCCTTTTTCGT GTGTGTCTGCAACCAATGGGCCTTTTTCCTCCTTTCGCTTGCATTTCATG CGCCAACCGCTTTCCCTTCCGCTTTTGTGCAACGAACAGGGCTTCAATGG CTGGGGCATTTACACGAAGCTCCTTTTTTGGACCGACTCGCTCAATATTC TCGGCATCTTGCCCCGTGGAGCACCCGGTGCCACTGGCCACTCCTTGCCC GGTAATGTTAACTTAGTGGTGATGCCGACGACGGACTACCCGAACGACTG GGCCAAGGTCATCCCGCTGACAGACGGCACGTGGTACAACGTTGTCATCA CGGTGACGCGCAACTCGGGCATGCTCTTCAACGAGATCACCGTCAACGGC GTCACCATGGTGACAAACTACCAGAGCACGACAAACCTAGACGGAGATGC CAACGGCGCCCAGCTCGGCATGTACACGTTTGACTTCGGCCAGAACACAT GGGGCGCGACACAGATGGCAAAGTTGTCGCTCCGGGACCTTTCGTTCAAG AAGGTCGGATCAGCGCCGTCCCCTACGCCCAACGTGTCGACCCGTCAGCC GACCCGCCGACCGACGGCGAAAGCGACGCATCAGCCGACGGCGAAAGCGC CGTCGCCGACGCCCAAAGCGACCCACAAGCCGACGAAGAGGCTGGACGCG CCGACGCCCAAGCACACGCCGCCGC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig7353:874..2098-

>mRNA_P-wetherbeei_contig7353.1.1 ID=mRNA_P-wetherbeei_contig7353.1.1|Name=mRNA_P-wetherbeei_contig7353.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=909bp|location=Sequence derived from alignment at P-wetherbeei_contig7353:874..2098- (Phaeothamnion wetherbeei SAG_119_79)
GGTAGCACTGATGTCTTCGTCGGTAACGCAGAGTTCTGCAACACTTGCGG
CGTCTTTCAAGTACCGGACTGTGACTTCATTTGCGCCGGCGGGGGCAGTA
GCGGCAGCGGTGCTGGCTGCGGCGATGCATCCCCAAACCCATGCACGTCG
AACCAGTACAAGTTCTCGGACGCGAACGGTTGGACCATCAACATGCCCAA
GTCGACAGCGATCGGCAAGCTTCCTTACCGCGCTTTCGCCTACCTGCCCT
TCTGCCATGGCTCGCCGATGTCGAGCTGCTGGGACGGGAGCGCACACGAC
TTCAAGTTTTCCTTCAAGCCGGATGGCTTCAATGGCTGGGGCATTTACAC
GAAGCTCCTTTTTTGGACCGACTCGCTCAATATTCTCGGCATCTTGCCCC
GTGGAGCACCCGGTGCCACTGGCCACTCCTTGCCCGGTAATGTTAACTTA
GTGGTGATGCCGACGACGGACTACCCGAACGACTGGGCCAAGGTCATCCC
GCTGACAGACGGCACGTGGTACAACGTTGTCATCACGGTGACGCGCAACT
CGGGCATGCTCTTCAACGAGATCACCGTCAACGGCGTCACCATGGTGACA
AACTACCAGAGCACGACAAACCTAGACGGAGATGCCAACGGCGCCCAGCT
CGGCATGTACACGTTTGACTTCGGCCAGAACACATGGGGCGCGACACAGA
TGGCAAAGTTGTCGCTCCGGGACCTTTCGTTCAAGAAGGTCGGATCAGCG
CCGTCCCCTACGCCCAACGTGTCGACCCGTCAGCCGACCCGCCGACCGAC
GGCGAAAGCGACGCATCAGCCGACGGCGAAAGCGCCGTCGCCGACGCCCA
AAGCGACCCACAAGCCGACGAAGAGGCTGGACGCGCCGACGCCCAAGCAC
ACGCCGCCG
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