mRNA_P-wetherbeei_contig7343.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig7343.1.1
Unique NamemRNA_P-wetherbeei_contig7343.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig7343.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig7343contigP-wetherbeei_contig7343:2527..2939 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size413
Hectar predicted targeting categorysignal peptide
Exons1
Cds size390
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186975.1653786-CDS-P-wetherbeei_contig7343:2526..29161683186975.1653786-CDS-P-wetherbeei_contig7343:2526..2916Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig7343 2527..2916 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186975.1820672-UTR-P-wetherbeei_contig7343:2916..29391683186975.1820672-UTR-P-wetherbeei_contig7343:2916..2939Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig7343 2917..2939 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig7343.1.1prot_P-wetherbeei_contig7343.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig7343 2527..2916 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig7343.1.1

>prot_P-wetherbeei_contig7343.1.1 ID=prot_P-wetherbeei_contig7343.1.1|Name=mRNA_P-wetherbeei_contig7343.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=130bp
MHEQGKARQRGGISISVWANFLHRVWAAMYFDRAATWIVHRTWRGGLNWN
ETTPGVWVVWVIVGVKRSIHASWREISNDCCTVRFPAECRGELMDPSLFP
RNSTLCIAGRQRRATAPKRQKISFCTPNV*
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mRNA from alignment at P-wetherbeei_contig7343:2527..2939-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig7343.1.1 ID=mRNA_P-wetherbeei_contig7343.1.1|Name=mRNA_P-wetherbeei_contig7343.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=413bp|location=Sequence derived from alignment at P-wetherbeei_contig7343:2527..2939- (Phaeothamnion wetherbeei SAG_119_79)
AAAGCGGGCAGGACAGGGGTGGCATGCATGAGCAGGGGAAAGCGCGTCAA
AGGGGAGGCATTTCGATTTCGGTTTGGGCGAATTTTTTGCACCGAGTGTG
GGCAGCCATGTATTTCGATCGGGCAGCGACCTGGATCGTCCACAGGACGT
GGCGCGGCGGCTTAAATTGGAACGAAACCACACCTGGCGTGTGGGTCGTC
TGGGTAATAGTAGGCGTAAAACGAAGCATTCATGCATCCTGGAGGGAAAT
TTCGAACGACTGTTGCACTGTTCGCTTCCCCGCGGAATGCAGAGGGGAAT
TGATGGACCCTTCACTCTTTCCCCGAAATTCGACGTTGTGTATAGCTGGT
AGGCAAAGGCGCGCGACAGCGCCGAAGAGACAAAAGATTAGTTTCTGCAC
CCCGAACGTGTGA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig7343:2527..2939-

>mRNA_P-wetherbeei_contig7343.1.1 ID=mRNA_P-wetherbeei_contig7343.1.1|Name=mRNA_P-wetherbeei_contig7343.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=390bp|location=Sequence derived from alignment at P-wetherbeei_contig7343:2527..2939- (Phaeothamnion wetherbeei SAG_119_79)
ATGCATGAGCAGGGGAAAGCGCGTCAAAGGGGAGGCATTTCGATTTCGGT
TTGGGCGAATTTTTTGCACCGAGTGTGGGCAGCCATGTATTTCGATCGGG
CAGCGACCTGGATCGTCCACAGGACGTGGCGCGGCGGCTTAAATTGGAAC
GAAACCACACCTGGCGTGTGGGTCGTCTGGGTAATAGTAGGCGTAAAACG
AAGCATTCATGCATCCTGGAGGGAAATTTCGAACGACTGTTGCACTGTTC
GCTTCCCCGCGGAATGCAGAGGGGAATTGATGGACCCTTCACTCTTTCCC
CGAAATTCGACGTTGTGTATAGCTGGTAGGCAAAGGCGCGCGACAGCGCC
GAAGAGACAAAAGATTAGTTTCTGCACCCCGAACGTGTGA
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