mRNA_P-wetherbeei_contig733.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig733.1.1
Unique NamemRNA_P-wetherbeei_contig733.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig733.1.1 vs. uniprot
Match: A0A835ZJC3_9STRA (Polyketide_cyc domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZJC3_9STRA)

HSP 1 Score: 319 bits (818), Expect = 2.810e-106
Identity = 180/296 (60.81%), Postives = 211/296 (71.28%), Query Frame = 1
Query:   34 MLWSGGRRTRPDEVTVNIERTSLNSRRISGSIVVDAPIEDVWLVLTDYDKLAEYVPNLTQSRLVPHPRGGIRLFQEGAQKIVGFDFRASLVMDMEEKYGEADDRLAQRKITFKLVDSGMFNDFDGEWRLQFNSRQSLQVNRDALPGEDRYKYTTKLFYMVYIRPRGPVPVLALEWQIGQEVPNNLAAVKKAAEMMGTDAAWVRRRLDESARFR-------VAKAAEAAAATAGPGGASPAAQVRGEGRRARSPAASAAEGRSPPRAD----------WEKDETLEAYIQKISKGSK 870
            MLWSGGRRTRPD+VTVNIER SLNSRRISGSI+VD PIEDVWLVLTDYD+L++YVPNLTQSR VP P GGIRLFQEGAQ+IVGFDFRASLVMDMEE YG+ DD+LA RKI FKLVDS MF DF GEWRLQFNSR    VN+ A PG+++Y Y+TK+FYMV IRP+G VPV+ALEWQI +EVPNNLAAVK+ AE+M +     R++  ++ + R        ++A+  AAA      A+ A   +        P     + R P   D          WE DETLEAYIQKIS   K
Sbjct:    1 MLWSGGRRTRPDQVTVNIERPSLNSRRISGSIIVDKPIEDVWLVLTDYDRLSDYVPNLTQSRQVPSPTGGIRLFQEGAQQIVGFDFRASLVMDMEEHYGDPDDKLAMRKIKFKLVDSAMFTDFSGEWRLQFNSRI---VNKGAGPGQEKYTYSTKVFYMVNIRPKGVVPVVALEWQISEEVPNNLAAVKRTAEVMDSAFFDARQQAMDARQLRSGVYISGYSQASATAAAVXXXXXANVALTTQ-------QPVLQQQQQRYPLPPDQSAAGVDSNGWETDETLEAYIQKISANRK 286          
BLAST of mRNA_P-wetherbeei_contig733.1.1 vs. uniprot
Match: A0A6H5J814_9PHAE (Polyketide_cyc domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J814_9PHAE)

HSP 1 Score: 288 bits (738), Expect = 3.670e-93
Identity = 170/292 (58.22%), Postives = 208/292 (71.23%), Query Frame = 1
Query:   13 GGSSPLDMLWSGGRRTRPDEVTVNIERTSLNSRRISGSIVVDAPIEDVWLVLTDYDKLAEYVPNLTQSRLVPHPRGGIRLFQEGAQKIVGFDFRASLVMDMEEKYGEADDRLAQRKITFKLVDSGMFNDFDGEWRLQFNSRQSLQVNRDALPGEDRYKYTTKLFYMVYIRPRGPVPVLALEWQIGQEVPNNLAAVKKAAEMMGTDAAWVRRRLDESARFRVAKAAEAAAATAGPGGASPAAQVRGEGRRARSPAASAAE----------GRSPPRADWEKDETLEAYIQKIS 858
            G +S L MLWSGGRRTR +EVTVNIERTS NSRRISGSIV++ PIEDVWL LTDY++LA+YVPNLT+S+L P   GGIRL+QEGAQKIVGFDFRAS+ M MEE +G+ ++++AQRK+TF L++S MFN+FDGEWR+QFNSR+  Q N    P   +Y+YTTKLFYMV+IRP+GPVPVLALEWQI  EVPNNL+A+K AAE +  +   +RR+  E          EAA   A P    P A  R E R+A + A   AE          G   P  +WE DETLEAY+  +S
Sbjct:   86 GEASRLQMLWSGGRRTRGNEVTVNIERTSRNSRRISGSIVINRPIEDVWLTLTDYNRLAKYVPNLTESKLRPSNDGGIRLWQEGAQKIVGFDFRASVEMFMEEHFGDPENKMAQRKLTFGLLESRMFNEFDGEWRMQFNSRK--QFNTAQGP---QYQYTTKLFYMVHIRPKGPVPVLALEWQISNEVPNNLSALKLAAEAVTPEYVEMRRKEREQ---------EAAKRFASP----PPADDR-EKRQANAIAKGGAEAFVAKGNGDEGYGQP--EWESDETLEAYLNTMS 356          
BLAST of mRNA_P-wetherbeei_contig733.1.1 vs. uniprot
Match: D7G841_ECTSI (Polyketide_cyc domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G841_ECTSI)

HSP 1 Score: 284 bits (726), Expect = 1.530e-92
Identity = 165/288 (57.29%), Postives = 196/288 (68.06%), Query Frame = 1
Query:   34 MLWSGGRRTRPDEVTVNIERTSLNSRRISGSIVVDAPIEDVWLVLTDYDKLAEYVPNLTQSRLVPHPRGGIRLFQEGAQKIVGFDFRASLVMDMEEKYGEADDRLAQRKITFKLVDSGMFNDFDGEWRLQFNSRQSLQVNRDALPGEDRYKYTTKLFYMVYIRPRGPVPVLALEWQIGQEVPNNLAAVKKAAEMMGTDAAWVRRR-------------LDESARFRVAKAAEAAAATAGPGGASPAAQVRGEGRRARSPAASAAEGRSPPRADWEKDETLEAYIQKIS 858
            MLWSGGRRT+ +EVTVNIERTS NSRRISGSIVV+ PIEDVWL LTDYD+LA+YVPNLTQS++ P   GGIRL+QEGAQKIVGFDFRAS+ M MEE +G+ ++R+AQRK+TF L+DS MFN+FDGEWR+QFNSR+  Q N    P    Y+YTTKLFYMV+IRP+GPVPVLALEWQI  EVPNNLAA+K AAE +  +   +RRR                          E   A A   G + A   +G G           EG   P  +WE DETLEAY+  +S
Sbjct:    1 MLWSGGRRTQGNEVTVNIERTSRNSRRISGSIVVNRPIEDVWLTLTDYDRLAKYVPNLTQSKVRPSNDGGIRLWQEGAQKIVGFDFRASVEMFMEEHFGDPENRMAQRKLTFGLLDSRMFNEFDGEWRMQFNSRK--QFNTAQGP---EYQYTTKLFYMVHIRPKGPVPVLALEWQISNEVPNNLAALKLAAEAVTPEYVEMRRRERXXXXXXXXXXXXXXXXXXXXXDEREKREANAIAKGGAEAFVAKGNGD----------EGYGQP--EWESDETLEAYLNTMS 271          
BLAST of mRNA_P-wetherbeei_contig733.1.1 vs. uniprot
Match: A0A6V1KTJ0_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1KTJ0_HETAK)

HSP 1 Score: 244 bits (622), Expect = 5.320e-76
Identity = 145/279 (51.97%), Postives = 180/279 (64.52%), Query Frame = 1
Query:   34 MLWSGGRRT-----RPDEVTVNIERTSLNSRRISGSIVVDAPIEDVWLVLTDYDKLAEYVPNLTQSRLVPHPRGGIRLFQEGAQKIVGFDFRASLVMDMEEKYGEADDRLAQRKITFKLVDSGMFNDFDGEWRLQFNSRQSLQVNRDALPGEDRYKYTTKLFYMVYIRPRGPVPVLALEWQIGQEVPNNLAAVKKAAEMMGTDA-AWVRRRLDESARFRVAKAAEAAAATAGPGGASPAAQVRGEGRRARSPAASAAEGRSPPRADWEKDETLEAYIQK 852
            M++  GRR        D V V IE  S+NSR+ISGSIV+D P++DVW +L+DYD LA+ VPNLTQS+LVPHP GGIRLFQEGAQKI+GFDFRASL MDM E   +A+++  QRKI FKLV+S MFN FDGEW +Q  SR     N +    +D++ YT+K+FY V ++PRGPVPV ALEWQI  EVPNNL AVK A E +   A A+V       A F    A + AAA  G               +AR+ A  AA G S     WE+DETL+ Y++K
Sbjct:   68 MVFGFGRRKDGSPGHEDNVDVRIEAPSMNSRKISGSIVIDRPVDDVWKILSDYDHLADNVPNLTQSKLVPHPTGGIRLFQEGAQKIIGFDFRASLTMDMTEVMEKAEEKFGQRKILFKLVESAMFNGFDGEWSIQNYSRIK---NPNPTGTDDQWIYTSKVFYSVVVKPRGPVPVAALEWQIKSEVPNNLRAVKLATERLPCSAGAYVP---PAEAHFDAPPAVDPAAAAYG--------AXXXXXXKARTGAGVAASGGSY----WEEDETLDMYVEK 328          
BLAST of mRNA_P-wetherbeei_contig733.1.1 vs. uniprot
Match: A0A4D9CWA6_9STRA (Polyketide_cyc domain-containing protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CWA6_9STRA)

HSP 1 Score: 219 bits (557), Expect = 1.690e-65
Identity = 117/204 (57.35%), Postives = 143/204 (70.10%), Query Frame = 1
Query:   40 WSGGRRTRPDEVTVNIERTSLNSRRISGSIVVDAPIEDVWLVLTDYDKLAEYVPNLTQSRLVPHPRGG--------IRLFQEGAQKIVGFDFRASLVMDMEEKYGEADDRLAQRKITFKLVDSGMFNDFDGEWRLQFNSRQSLQVNRDALPGEDRYKYTTKLFYMVYIRPRGPVPVLALEWQIGQEVPNNLAAVKKAAEMMGTD 627
            W GG+    +EV VNIE  S N RRIS SIVV+ P+ DVW +LTDY+ L+EYVPNLTQSRLV  P G         +RLFQEGAQ IVGF+F+ASL MDMEE     D++L QR+I F+LVDS MF+DF GEWRLQ  SR      R A   E+ + Y+TKLFYMV ++P+GPVPV ALEW+I ++VP NL AVK A+E +  D
Sbjct:   89 WRGGKNEDEEEVLVNIESPSANVRRISSSIVVNRPLSDVWKILTDYNNLSEYVPNLTQSRLVATPPGWEARGKNKEVRLFQEGAQTIVGFNFKASLTMDMEEVVEAEDEKLGQRRIKFRLVDSAMFSDFSGEWRLQCYSRM-----RTACENEE-WTYSTKLFYMVNVKPKGPVPVGALEWRIKEDVPTNLRAVKVASEKLPWD 286          
BLAST of mRNA_P-wetherbeei_contig733.1.1 vs. uniprot
Match: W7TTP4_9STRA (START-like domain protein n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TTP4_9STRA)

HSP 1 Score: 222 bits (565), Expect = 1.820e-65
Identity = 129/248 (52.02%), Postives = 162/248 (65.32%), Query Frame = 1
Query:    1 SAGSGGSSPLDML-----WSGGRRTRPDEVTVNIERTSLNSRRISGSIVVDAPIEDVWLVLTDYDKLAEYVPNLTQSRLVPHPRGG--------IRLFQEGAQKIVGFDFRASLVMDMEEKYGEADDRLAQRKITFKLVDSGMFNDFDGEWRLQFNSRQSLQVNRDALPGEDRYKYTTKLFYMVYIRPRGPVPVLALEWQIGQEVPNNLAAVKKAAEMMGTD--------AAWVRRRLDESARFRVAK 681
            SA S  +  L+M+     W GG+    +EV VNIE  S N RRIS SIVV+ P+ DVW +LTDY+ L+EYVPNLTQSRLV  P G         +RLFQEGAQ IVGF+F+ASL MDMEE +   D++L QR+I F+LVDS MF+DF GEWRLQ  SR      R A   E+ + Y+TKLFYMV ++P+GPVPV ALEW+I ++VP NL AVK A+E +  D        AA    R ++ AR  VA+
Sbjct:  183 SAASQRTGSLEMISSMFRWRGGKNEDEEEVLVNIESPSANVRRISSSIVVNRPLSDVWKILTDYNNLSEYVPNLTQSRLVATPPGWEARGKNKEVRLFQEGAQTIVGFNFKASLTMDMEEVFEAEDEKLGQRRIKFRLVDSAMFSDFSGEWRLQCYSRM-----RTACENEE-WTYSTKLFYMVNVKPKGPVPVGALEWRIKEDVPTNLRAVKVASEKLPWDCEQDQAALAALAAGRREQQARMTVAQ 424          
BLAST of mRNA_P-wetherbeei_contig733.1.1 vs. uniprot
Match: A0A7R9YDQ6_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9YDQ6_9STRA)

HSP 1 Score: 211 bits (537), Expect = 1.270e-63
Identity = 111/194 (57.22%), Postives = 142/194 (73.20%), Query Frame = 1
Query:   49 GRRTRPDEVTVNIERTSLNSRRISGSIVVDAPIEDVWLVLTDYDKLAEYVPNLTQSRLVPHPRGGIRLFQEGAQKIVGFDFRASLVMDMEEKYGEAD-DRLAQRKITFKLVDSGMFNDFDGEWRLQFNSRQSLQ--VNRDALPGEDRYKYTTKLFYMVYIRPRGPVPVLALEWQIGQEVPNNLAAVKKAAEMMG 621
            GR ++  EV V IER + N RRISG+ VVD+ ++DVW +LTDYD LA++VPNLTQSR + HP+GGIRLFQEGAQKIVGF+FRASL MDM  K  +   D   +R I F+LV+S MF DF GEWRL+  SR+  +  V+ + +PG   Y Y+T +FY V I+PRG VPV ALEW+I ++VP N+ AVKKA+E  G
Sbjct:   59 GRSSKDSEVVVTIERLASNIRRISGTCVVDSSVDDVWAILTDYDNLADHVPNLTQSRRLNHPQGGIRLFQEGAQKIVGFNFRASLTMDMTVKIDDDKADAARKRAIGFELVESQMFKDFSGEWRLEPFSRKKKRDPVSGNVIPG---YTYSTMMFYTVTIKPRGVVPVGALEWRIKEDVPTNMLAVKKASEEKG 249          
BLAST of mRNA_P-wetherbeei_contig733.1.1 vs. uniprot
Match: A0A0G4H7W0_VITBC (Polyketide_cyc domain-containing protein n=1 Tax=Vitrella brassicaformis (strain CCMP3155) TaxID=1169540 RepID=A0A0G4H7W0_VITBC)

HSP 1 Score: 212 bits (540), Expect = 8.940e-63
Identity = 106/194 (54.64%), Postives = 138/194 (71.13%), Query Frame = 1
Query:   67 DEVTVNIERTSLNSRRISGSIVVDAPIEDVWLVLTDYDKLAEYVPNLTQSRLVPHPRG------------GIRLFQEGAQKIVGFDFRASLVMDMEEKYGEADDRLAQRKITFKLVDSGMFNDFDGEWRLQFNSRQSLQVNRDALPGEDRYKYTTKLFYMVYIRPRGPVPVLALEWQIGQEVPNNLAAVKKAAE 612
            D V+VNIER + N RRISGS++VD  +ED W +LTDYD LA +VPNL  S+ VP PR              +RL+QEGAQKI+GFDFRA++ MDM E  G+ ++R+A R I FKL DS  F+ FDGEW++Q ++R+   V R    G+D   YTTKLFY+V +RP+GPVPV+ALEW+I ++VP NL AVK+AAE
Sbjct:  144 DSVSVNIERPAANVRRISGSVIVDTSMEDCWSILTDYDNLAAHVPNLVVSQRVPLPRSLASSGLNGDDMWQMRLYQEGAQKIIGFDFRAAVTMDMREVLGDPENRMAPRLIEFKLADSQFFSQFDGEWKIQAHTRR---VRRHPATGDDEISYTTKLFYVVTVRPKGPVPVMALEWRIKEDVPTNLKAVKQAAE 334          
BLAST of mRNA_P-wetherbeei_contig733.1.1 vs. uniprot
Match: A0A7S2SEL4_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SEL4_9STRA)

HSP 1 Score: 209 bits (533), Expect = 1.660e-62
Identity = 108/187 (57.75%), Postives = 136/187 (72.73%), Query Frame = 1
Query:   64 PDEVTVNIERTSLNSRRISGSIVVDAPIEDVWLVLTDYDKLAEYVPNLTQSRLVPHPRGGIRLFQEGAQKIVGFDFRASLVMDMEEKYGEADDRLAQRK--ITFKLVDSGMFNDFDGEWRLQFNSRQSLQVNRDALPGEDRYKYTTKLFYMVYIRPRGPVPVLALEWQIGQEVPNNLAAVKKAAEMM 618
            P+++ V IER ++NSRRIS SIV+D P EDVW +LTDY+ LA +VPNL QSRL+  P GG+RL+QEGAQKI+GFDF ASLVMDMEE     D R    K  I FKLV+S  F++FDG W+LQ +SR+ +       PG + + YTTKLFY V+IRP GPVPVL LEW+I ++VP NL  VK A+E +
Sbjct:  130 PEKIPVLIERPTMNSRRISASIVIDRPPEDVWSILTDYNNLATHVPNLVQSRLLDRPGGGLRLYQEGAQKIIGFDFSASLVMDMEEVL---DSRAGSSKKAIQFKLVESRFFSEFDGIWQLQVHSRRPI-------PGTNTFTYTTKLFYEVFIRPNGPVPVLPLEWRIREDVPTNLRGVKTASERL 306          
BLAST of mRNA_P-wetherbeei_contig733.1.1 vs. uniprot
Match: A0A7S0JC23_9EUKA (Hypothetical protein n=2 Tax=Calcidiscus leptoporus TaxID=127549 RepID=A0A7S0JC23_9EUKA)

HSP 1 Score: 197 bits (502), Expect = 6.240e-59
Identity = 110/180 (61.11%), Postives = 125/180 (69.44%), Query Frame = 1
Query:   73 VTVNIERTSLNSRRISGSIVVDAPIEDVWLVLTDYDKLAEYVPNLTQSRLVPHPRGGIRLFQEGAQKIVGFDFRASLVMDMEEKYGEADDRLAQRKITFKLVDSGMFNDFDGEWRLQFNSRQSLQVNRDALPGEDRYKYTTKLFYMVYIRPRGPVPVLALEWQIGQEVPNNLAAVKKAAE 612
            V VNI  T  NSR IS SI+V A  EDVW +LTDYD LA +VPNL +S L PHP GGIRLFQEGAQKIVGFDFRASL MDM E   +A  R  QR I FKLVDS MF  F+G WRL   SR   + +        +Y+YTTKLFYMV I P+G VPV ALEW+I ++VP NL +VK AAE
Sbjct:   76 VPVNIAMTGFNSRSISASIIVAAAPEDVWTILTDYDNLATHVPNLVKSELRPHPTGGIRLFQEGAQKIVGFDFRASLTMDMRELTDDA--RRGQRSIEFKLVDSLMFAAFNGVWRLAPYSRAPSRTD------PTKYEYTTKLFYMVDITPKGLVPVPALEWRIREDVPINLQSVKIAAE 247          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig733.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835ZJC3_9STRA2.810e-10660.81Polyketide_cyc domain-containing protein n=1 Tax=T... [more]
A0A6H5J814_9PHAE3.670e-9358.22Polyketide_cyc domain-containing protein n=1 Tax=E... [more]
D7G841_ECTSI1.530e-9257.29Polyketide_cyc domain-containing protein n=1 Tax=E... [more]
A0A6V1KTJ0_HETAK5.320e-7651.97Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A4D9CWA6_9STRA1.690e-6557.35Polyketide_cyc domain-containing protein n=1 Tax=N... [more]
W7TTP4_9STRA1.820e-6552.02START-like domain protein n=1 Tax=Nannochloropsis ... [more]
A0A7R9YDQ6_9STRA1.270e-6357.22Hypothetical protein n=1 Tax=Pinguiococcus pyrenoi... [more]
A0A0G4H7W0_VITBC8.940e-6354.64Polyketide_cyc domain-containing protein n=1 Tax=V... [more]
A0A7S2SEL4_9STRA1.660e-6257.75Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A7S0JC23_9EUKA6.240e-5961.11Hypothetical protein n=2 Tax=Calcidiscus leptoporu... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig733contigP-wetherbeei_contig733:64..2483 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog2880.D7G841
PFAMsPolyketide_cyc
Model size873
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons5
Evalue2.51e-93
EggNOG OGs2CXIA@1|root,2RXSU@2759|Eukaryota
Ec32 ortholog descriptionStreptomyces cyclase/dehydrase
Ec32 orthologEc-12_001590.1
DescriptionPolyketide cyclase / dehydrase and lipid transport
Cds size873
COG categoryS
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186972.8705034-CDS-P-wetherbeei_contig733:63..3911683186972.8705034-CDS-P-wetherbeei_contig733:63..391Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig733 64..391 +
1683186972.8821914-CDS-P-wetherbeei_contig733:850..9601683186972.8821914-CDS-P-wetherbeei_contig733:850..960Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig733 851..960 +
1683186972.8921733-CDS-P-wetherbeei_contig733:1200..12831683186972.8921733-CDS-P-wetherbeei_contig733:1200..1283Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig733 1201..1283 +
1683186972.9115624-CDS-P-wetherbeei_contig733:1831..20791683186972.9115624-CDS-P-wetherbeei_contig733:1831..2079Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig733 1832..2079 +
1683186972.9208255-CDS-P-wetherbeei_contig733:2379..24831683186972.9208255-CDS-P-wetherbeei_contig733:2379..2483Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig733 2380..2483 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig733.1.1prot_P-wetherbeei_contig733.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig733 64..2483 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig733.1.1

>prot_P-wetherbeei_contig733.1.1 ID=prot_P-wetherbeei_contig733.1.1|Name=mRNA_P-wetherbeei_contig733.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=291bp
SAGSGGSSPLDMLWSGGRRTRPDEVTVNIERTSLNSRRISGSIVVDAPIE
DVWLVLTDYDKLAEYVPNLTQSRLVPHPRGGIRLFQEGAQKIVGFDFRAS
LVMDMEEKYGEADDRLAQRKITFKLVDSGMFNDFDGEWRLQFNSRQSLQV
NRDALPGEDRYKYTTKLFYMVYIRPRGPVPVLALEWQIGQEVPNNLAAVK
KAAEMMGTDAAWVRRRLDESARFRVAKAAEAAAATAGPGGASPAAQVRGE
GRRARSPAASAAEGRSPPRADWEKDETLEAYIQKISKGSK*
back to top

mRNA from alignment at P-wetherbeei_contig733:64..2483+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig733.1.1 ID=mRNA_P-wetherbeei_contig733.1.1|Name=mRNA_P-wetherbeei_contig733.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=2420bp|location=Sequence derived from alignment at P-wetherbeei_contig733:64..2483+ (Phaeothamnion wetherbeei SAG_119_79)
AGCGCCGGCAGCGGAGGCTCCTCCCCGCTGGACATGCTCTGGTCAGGCGG TCGCCGGACGCGGCCAGACGAGGTGACCGTCAACATCGAGCGGACAAGCC TCAACTCGCGGCGCATCAGCGGGAGCATCGTGGTGGACGCGCCGATCGAG GACGTGTGGCTGGTGTTGACGGACTATGACAAGCTGGCCGAGTATGTGCC GAATCTGACGCAGAGCCGCCTGGTGCCGCACCCGCGGGGCGGCATCCGGC TCTTCCAAGAGGGCGCGCAGAAGATCGTTGGCTTCGACTTCCGGGCCAGC CTCGTCATGGACATGGAGGAGAAATATGGTGAGTGAATTGCAGAAAGGAT GAGAGATTTTGTGATGCGAGTACGCTACCTTTCTCCCTCTCTCGTGAGCT CAGTGAGCTTTTTTGCCTTTGGCGGCCGACTGCGGAAGATTTTCCTTTCG CGTTGCTTTGTCGTGCATGTTGGATTGTTTGTACCTTCCGCGTTGGGTGG GGAGAACAAGTTTCTTTTGCATGGACGAGCAATTTGAAAGGCCGATGACC TCTCCCTCGTCTCCTTTAGCCTTACGAAGGATATAATCTGGCGTTGCTTT ATCGTTCTCTTGAGCGGCCGGATGGCATGTGTAGGCAGATCCGCGAGGCC AAACTTTCCGCCCTCTTTTTATCCCGGCTCTAGCTTCGGCTCACGGCAAT TTCGTTGGTCTTTGATTTTCATCTTCCGTCACCGTTCCATTCTGCCTATT TCGCATACATTTGGGTGTGTCGCGTCACTCTTTTCAGGCGAAGCAGACGA CCGGCTGGCGCAGCGAAAGATCACCTTCAAACTTGTCGACAGCGGCATGT TCAACGACTTCGACGGGGAGTGGCGTCTCCAGTTCAACTCCCGCCAGGTT CGTCCGCTCCGTCCGTTTGTACGCCCTTTCTTTGGATCTTTCTTTCGGAA GATTTCCTCCAGTTGGAATGTCCACTTTGAAGCCGCCTAGTTTACCTTCT CTCTCCGATCCGGACGGCATCGGAGGTGGTTTGTCTTGCGTTCGTGACTT CCTGTCAGTTCTCCCTGGGGGAATCTCCAGTTTTGGTCTTATCGCGTAGT CGGGCTTTACACATGCCTCTTCTATCTCGATTTTGAGTCGCTGCAGGTGA ATCGCGACGCTTTGCCCGGAGAGGATCGTTACAAGTACACAACCAAGCTC TTCTACATGGTTTATATCAGGTCCGTCCGTCAGTTGGCAATCGAAGGGTG CTGCTTGCGCTCCCGCGTACAGGAAACGCAATCGGCCTCAGGTTTCCCTG CCAGATGGTTCTCTTTTGGGCACGCGTAGAGAGGCGGCTCTTGACCTCTT TTGTGTACGGCAGAAAAACGCTCTTTATAGGTCCCCATTCTTTATTCTGT CAGAAATGTGTGCTTGGGTTCCTGGCATTTTGAAACGGCGGTATGTCAAA TCTTTTGTGTCTGTCAAAACACCTAGCTATTATTATTTCGACTCACGGCT TTTCCAATATCCTTCGCCGCTTTTCATCCGTTTCAACGATCGCGATGACG ATGACTGTGGCTCTGGCGGCTCAAAATATTCTGGCGGCGACGTCGGCTAC CCTGGCCACACCCTGGCGGCGGCAAACGTGGTGGTTCTCTCGGCGGCTCT CCACGGCTCCCGTGGCGGCGGCTTTAATGTGGGGGGCTCTGGCGGCGACG TCGTTGGCGGCGACCGCGGCATCTCTGGCGGCGGCGGCATTCCTGGGGCC GGTGACTGTCGACGGCAGGCCGAGGGGCCCCGTGCCGGTGCTGGCACTCG AGTGGCAGATCGGGCAGGAGGTGCCCAATAACCTCGCAGCGGTCAAGAAG GCCGCCGAGATGATGGGCACCGACGCCGCCTGGGTGCGCCGCCGGCTCGA TGAGTCGGCCCGCTTCCGCGTCGCAAAGGCGGCCGAGGCGGCGGCGGCCA CGGCGGGGCCCGGCGGGGCGTCTCCCGCTGCGCAGGTGCGTGGGGAGGGA AGGAGGGCCCGTTCTCGTTGGTTCTTCGTTTATACCCCGCATTTCTTCGC CTTCCGAGGAAGAGGAGGGAGCTTGCTTTTGAAAGCCGGTCTTCATGTGC ACGCATTATCCTTGTTATTTAGAACGGAGACTTACGATTATCCTTCCTGT GGTCCCTTCCCTTACTTTTTCCTGTATCTGGCGCACTCTGCCGCGTTCCT CTCTTCCTTGCCGACATAGGCGGACTGGGGAAATGCCGCGGCCGTGATGT CGCGCGTCAACGGCAACGGCCCGGCGTTAATGACGGCGGCGACGGCAGGG GCAACGGGCACGGCAGCGGCAGCTTCGGCGGCTGAAGGACGGTCGCCGCC ACGGGCTGACTGGGAAAAGGACGAAACGCTGGAAGCGTACATACAAAAGA TAAGCAAGGGCAGCAAGTAG
back to top

Coding sequence (CDS) from alignment at P-wetherbeei_contig733:64..2483+

>mRNA_P-wetherbeei_contig733.1.1 ID=mRNA_P-wetherbeei_contig733.1.1|Name=mRNA_P-wetherbeei_contig733.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=873bp|location=Sequence derived from alignment at P-wetherbeei_contig733:64..2483+ (Phaeothamnion wetherbeei SAG_119_79)
AGCGCCGGCAGCGGAGGCTCCTCCCCGCTGGACATGCTCTGGTCAGGCGG
TCGCCGGACGCGGCCAGACGAGGTGACCGTCAACATCGAGCGGACAAGCC
TCAACTCGCGGCGCATCAGCGGGAGCATCGTGGTGGACGCGCCGATCGAG
GACGTGTGGCTGGTGTTGACGGACTATGACAAGCTGGCCGAGTATGTGCC
GAATCTGACGCAGAGCCGCCTGGTGCCGCACCCGCGGGGCGGCATCCGGC
TCTTCCAAGAGGGCGCGCAGAAGATCGTTGGCTTCGACTTCCGGGCCAGC
CTCGTCATGGACATGGAGGAGAAATATGGCGAAGCAGACGACCGGCTGGC
GCAGCGAAAGATCACCTTCAAACTTGTCGACAGCGGCATGTTCAACGACT
TCGACGGGGAGTGGCGTCTCCAGTTCAACTCCCGCCAGTCGCTGCAGGTG
AATCGCGACGCTTTGCCCGGAGAGGATCGTTACAAGTACACAACCAAGCT
CTTCTACATGGTTTATATCAGGCCGAGGGGCCCCGTGCCGGTGCTGGCAC
TCGAGTGGCAGATCGGGCAGGAGGTGCCCAATAACCTCGCAGCGGTCAAG
AAGGCCGCCGAGATGATGGGCACCGACGCCGCCTGGGTGCGCCGCCGGCT
CGATGAGTCGGCCCGCTTCCGCGTCGCAAAGGCGGCCGAGGCGGCGGCGG
CCACGGCGGGGCCCGGCGGGGCGTCTCCCGCTGCGCAGGTGCGTGGGGAG
GGAAGGAGGGCCCGTTCTCCGGCAGCTTCGGCGGCTGAAGGACGGTCGCC
GCCACGGGCTGACTGGGAAAAGGACGAAACGCTGGAAGCGTACATACAAA
AGATAAGCAAGGGCAGCAAGTAG
back to top