mRNA_P-wetherbeei_contig7323.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig7323.1.1
Unique NamemRNA_P-wetherbeei_contig7323.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig7323.1.1 vs. uniprot
Match: A0A6V1M2K4_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1M2K4_HETAK)

HSP 1 Score: 133 bits (335), Expect = 4.340e-35
Identity = 80/154 (51.95%), Postives = 96/154 (62.34%), Query Frame = 1
Query:    1 LAGYLAFRDDTDGDILDNFSGNFVGLFKVLVVVHLCFYIPNEFVVMRHSLCVLFGVEAAALPPLTFVAVTVGLLAFMVAVVLALAAAGIASGTAFGYILDLVGGVCGSLVSFCFPALFYLRATGGEGE-WAAACKVLAGFGAFAMAATVIATLA 459
            LAGYL FR  T GDILDNF G     FKVL+V HL  YIP +FVVMRHS C + G +A  LP   +V VTVGLL F + VV+ L  AG++ G AFGYILDL GGV  +++ F  P +FY R     G+   A  + LAG+G   MAA   AT A
Sbjct:  169 LAGYLCFRSSTSGDILDNFQGPNFYFFKVLLVTHLILYIPLDFVVMRHSFCKVLGTDAIELPTGRYVVVTVGLLTFSLGVVMVLYYAGVSEGDAFGYILDLTGGVGNAMLGFVLPGIFYARLNKDPGDPLLARARGLAGWGVCVMAAVSAATAA 322          
BLAST of mRNA_P-wetherbeei_contig7323.1.1 vs. uniprot
Match: A0A6V2Y555_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V2Y555_HETAK)

HSP 1 Score: 133 bits (335), Expect = 4.300e-34
Identity = 80/154 (51.95%), Postives = 96/154 (62.34%), Query Frame = 1
Query:    1 LAGYLAFRDDTDGDILDNFSGNFVGLFKVLVVVHLCFYIPNEFVVMRHSLCVLFGVEAAALPPLTFVAVTVGLLAFMVAVVLALAAAGIASGTAFGYILDLVGGVCGSLVSFCFPALFYLRATGGEGE-WAAACKVLAGFGAFAMAATVIATLA 459
            LAGYL FR  T GDILDNF G     FKVL+V HL  YIP +FVVMRHS C + G +A  LP   +V VTVGLL F + VV+ L  AG++ G AFGYILDL GGV  +++ F  P +FY R     G+   A  + LAG+G   MAA   AT A
Sbjct:  305 LAGYLCFRSSTSGDILDNFQGPNFYFFKVLLVTHLILYIPLDFVVMRHSFCKVLGTDAIELPTGRYVVVTVGLLTFSLGVVMVLYYAGVSEGDAFGYILDLTGGVGNAMLGFVLPGIFYARLNKDPGDPLLARARGLAGWGVCVMAAVSAATAA 458          
BLAST of mRNA_P-wetherbeei_contig7323.1.1 vs. uniprot
Match: A0A6V1XUJ0_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1XUJ0_HETAK)

HSP 1 Score: 118 bits (296), Expect = 1.540e-28
Identity = 62/121 (51.24%), Postives = 82/121 (67.77%), Query Frame = 1
Query:    1 LAGYLAFRDDTDGDILDNFSGNFVGLFKVLVVVHLCFYIPNEFVVMRHSLCVLFGVEAAALPPLTFVAVTVGLLAFMVAVVLALAAAGIASGTAFGYILDLVGGVCGSLVSFCFPALFYLR 363
            LAGYL+FRD T+GDILDNFSG+     K+L+++HL  YIP +FVVMRHS+C +FG     +    ++ +T  LLAF    V+AL A G+A G AFGYILD  GG+   ++SF  P  FYL+
Sbjct:  301 LAGYLSFRDYTEGDILDNFSGSGWDFMKILLIIHLLLYIPIDFVVMRHSVCKIFGWNVDTMHIAPYLVLTAILLAFTAGCVMALYAVGVAEGDAFGYILDFTGGLTAPILSFICPGAFYLK 421          
BLAST of mRNA_P-wetherbeei_contig7323.1.1 vs. uniprot
Match: A0A835Z9L5_9STRA (Transmembrane amino acid transporter protein-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z9L5_9STRA)

HSP 1 Score: 104 bits (260), Expect = 1.100e-23
Identity = 58/121 (47.93%), Postives = 79/121 (65.29%), Query Frame = 1
Query:    1 LAGYLAFRDDTDGDILDNFSGNFVGLFKVLVVVHLCFYIPNEFVVMRHSLCVLFGVEAAALPPLTFVAVTVGLLAFMVAVVLALAAAGIASGTAFGYILDLVGGVCGSLVSFCFPALFYLR 363
            LAGYL+FR++ DG+IL NF G      K+L+V HL +Y P EFVV+RHS+  L   E  A+     V  T  ++  +VA+ +AL A G++SGTAFG ILD+ GGV GS  +F  PA+ +LR
Sbjct:  269 LAGYLSFREEVDGNILTNFVGWVGDALKILLVAHLVWYTPQEFVVLRHSILRLAKQEPLAMSTALRVGSTFAIIGCLVAICIALDATGVSSGTAFGIILDIGGGVAGSFAAFILPAIIFLR 389          
BLAST of mRNA_P-wetherbeei_contig7323.1.1 vs. uniprot
Match: A0A7S3HJ43_9STRA (Hypothetical protein n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3HJ43_9STRA)

HSP 1 Score: 102 bits (255), Expect = 9.200e-23
Identity = 63/153 (41.18%), Postives = 89/153 (58.17%), Query Frame = 1
Query:    1 LAGYLAFRDDTDGDILDNFSGNFVGLFKVLVVVHLCFYIPNEFVVMRHSLC-VLFGVEAAALPPLTFVAVTVGLLAFMVAVVLALAAAGIASGTAFGYILDLVGGVCGSLVSFCFPALFYLRATGGEGEWAAACKVLAGFGAFAMAATVIATL 456
            L GYL+F  DT+G+ILDNF+ +   +FK++VV+HL  YIP  FV+MR+S+  V F   +  LP  T   +T+GLLA  V +VL L   G+ SG AF  +L++ GG+ GSL     PA  YL+    + ++     VL  FG   M A    T+
Sbjct:  306 LVGYLSFGSDTEGEILDNFTQHGYDVFKLMVVIHLILYIPVNFVIMRYSIVKVFFQTRSELLPSATHSIITIGLLAATVGIVLLLLGLGLESGAAFSLLLNITGGIGGSLEMLIIPAAIYLQVMPKDAKFYKYAMVLLVFGFAVMIAVTAVTI 458          
BLAST of mRNA_P-wetherbeei_contig7323.1.1 vs. uniprot
Match: A0A482SCF6_9ARCH (Aa_trans domain-containing protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482SCF6_9ARCH)

HSP 1 Score: 89.4 bits (220), Expect = 4.950e-18
Identity = 51/108 (47.22%), Postives = 72/108 (66.67%), Query Frame = 1
Query:    1 LAGYLAFRDDTDGDILDNFSGNFVGLFKVLVVVHLCFYIPNEFVVMRHSLC-VLFGVEAAALPPLTFVAVTVGLLAFMVAVVLALAAAGIASGTAFGYILDLVGGVCG 321
            +AGYL+F  DT+G ILDNF  +    FK++VV HL  YIP  FV+MR+S+  V  G+ +  L   T   +++ LL F+ A+V+AL AAG+ASG AF  IL++ GG+ G
Sbjct:  300 VAGYLSFGKDTEGVILDNFHSHGFDFFKIMVVTHLILYIPVNFVIMRYSIVKVTTGLRSELLSTTTHTILSIALLFFVTAIVIALLAAGLASGAAFALILNITGGIGG 407          
BLAST of mRNA_P-wetherbeei_contig7323.1.1 vs. uniprot
Match: A0A482SFY3_9ARCH (Aa_trans domain-containing protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482SFY3_9ARCH)

HSP 1 Score: 80.1 bits (196), Expect = 1.200e-14
Identity = 52/151 (34.44%), Postives = 81/151 (53.64%), Query Frame = 1
Query:    1 LAGYLAFRDDTDGDILDNFSGNFVGLFKVLVVVHLCFYIPNEFVVMRHSLCVLFGVEAAALPPLTFVAVTVGLLAFMVAVVLALAAAGIASGTAFGYILDLVGGVCGSLVSFCFPALFYLRATGGEGEWAAACKVLAGFGAFAMAATVIAT 453
            L GYL F D+T+ +IL+NF+G+   +FK+ ++VHL  YIP +FV+ R SL  L   +        FV  T+ L+AF+  + + L    + +GTA   ++++ GG+ GS+V F  P L   R    E +       L GFG   M   ++ T
Sbjct:  317 LVGYLCFLDNTETNILENFTGDVGAVFKIGLIVHLILYIPGDFVIFRASLLKLCDRDVQKQNDFEFVTQTLSLIAFITLIAIILQVT-VPNGTALNAVINVSGGIAGSVVYFIVPGLCGKRLFPEEPQTVYLSYALIGFGVVIMILVLVGT 466          
BLAST of mRNA_P-wetherbeei_contig7323.1.1 vs. uniprot
Match: A0A059X054_9BACT (Transmembrane amino acid transporter protein n=1 Tax=uncultured bacterium TaxID=77133 RepID=A0A059X054_9BACT)

HSP 1 Score: 68.6 bits (166), Expect = 5.340e-12
Identity = 29/55 (52.73%), Postives = 43/55 (78.18%), Query Frame = 1
Query:    1 LAGYLAFRDDTDGDILDNFSGNFVGLFKVLVVVHLCFYIPNEFVVMRHSLCVLFG 165
            +AGYL+F+ DT G ILDNF+GN+  +FK+++++HL  YIP +F+ MR+SL  L G
Sbjct:   26 VAGYLSFKTDTQGIILDNFTGNYSDIFKIMLIIHLVLYIPVDFMTMRYSLVKLSG 80          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig7323.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 8
Match NameE-valueIdentityDescription
A0A6V1M2K4_HETAK4.340e-3551.95Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A6V2Y555_HETAK4.300e-3451.95Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A6V1XUJ0_HETAK1.540e-2851.24Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A835Z9L5_9STRA1.100e-2347.93Transmembrane amino acid transporter protein-domai... [more]
A0A7S3HJ43_9STRA9.200e-2341.18Hypothetical protein n=1 Tax=Spumella elongata Tax... [more]
A0A482SCF6_9ARCH4.950e-1847.22Aa_trans domain-containing protein n=1 Tax=archaeo... [more]
A0A482SFY3_9ARCH1.200e-1434.44Aa_trans domain-containing protein n=1 Tax=archaeo... [more]
A0A059X054_9BACT5.340e-1252.73Transmembrane amino acid transporter protein n=1 T... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig7323contigP-wetherbeei_contig7323:237..698 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog2880.D7FZR9
PFAMsAa_trans
Model size462
Max annot lvl2759|Eukaryota
KEGG koko:K14996
KEGG TC2.A.18.6
Hectar predicted targeting categorysignal anchor
Exons1
Evalue6.16e-14
EggNOG OGsCOG0814@1|root,KOG1305@2759|Eukaryota
Descriptionamino acid transmembrane transporter activity
Cds size462
COG categoryE
BRITEko00000,ko02000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186972.3512557-CDS-P-wetherbeei_contig7323:236..6981683186972.3512557-CDS-P-wetherbeei_contig7323:236..698Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig7323 237..698 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig7323.1.1prot_P-wetherbeei_contig7323.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig7323 237..698 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig7323.1.1

>prot_P-wetherbeei_contig7323.1.1 ID=prot_P-wetherbeei_contig7323.1.1|Name=mRNA_P-wetherbeei_contig7323.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=154bp
LAGYLAFRDDTDGDILDNFSGNFVGLFKVLVVVHLCFYIPNEFVVMRHSL
CVLFGVEAAALPPLTFVAVTVGLLAFMVAVVLALAAAGIASGTAFGYILD
LVGGVCGSLVSFCFPALFYLRATGGEGEWAAACKVLAGFGAFAMAATVIA
TLA*
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mRNA from alignment at P-wetherbeei_contig7323:237..698+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig7323.1.1 ID=mRNA_P-wetherbeei_contig7323.1.1|Name=mRNA_P-wetherbeei_contig7323.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=462bp|location=Sequence derived from alignment at P-wetherbeei_contig7323:237..698+ (Phaeothamnion wetherbeei SAG_119_79)
CTGGCGGGTTACCTGGCCTTTCGCGACGACACCGATGGCGACATTCTCGA CAACTTCTCCGGAAACTTCGTGGGCCTCTTCAAGGTCCTCGTCGTCGTCC ACCTCTGCTTCTACATCCCTAACGAGTTCGTCGTCATGCGACACTCCCTC TGCGTCCTCTTCGGGGTCGAGGCGGCGGCCCTGCCACCACTGACATTCGT CGCCGTCACTGTCGGCCTTCTGGCGTTCATGGTGGCGGTGGTGCTGGCGC TGGCGGCGGCGGGGATCGCCTCCGGGACGGCCTTCGGTTACATTTTGGAT CTAGTCGGAGGGGTCTGTGGCTCGCTCGTCAGCTTTTGCTTTCCCGCGTT GTTTTATCTTCGTGCGACCGGCGGCGAGGGGGAGTGGGCGGCGGCGTGCA AGGTGCTGGCCGGCTTTGGGGCGTTTGCTATGGCGGCCACTGTGATCGCA ACTCTTGCATGA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig7323:237..698+

>mRNA_P-wetherbeei_contig7323.1.1 ID=mRNA_P-wetherbeei_contig7323.1.1|Name=mRNA_P-wetherbeei_contig7323.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=462bp|location=Sequence derived from alignment at P-wetherbeei_contig7323:237..698+ (Phaeothamnion wetherbeei SAG_119_79)
CTGGCGGGTTACCTGGCCTTTCGCGACGACACCGATGGCGACATTCTCGA
CAACTTCTCCGGAAACTTCGTGGGCCTCTTCAAGGTCCTCGTCGTCGTCC
ACCTCTGCTTCTACATCCCTAACGAGTTCGTCGTCATGCGACACTCCCTC
TGCGTCCTCTTCGGGGTCGAGGCGGCGGCCCTGCCACCACTGACATTCGT
CGCCGTCACTGTCGGCCTTCTGGCGTTCATGGTGGCGGTGGTGCTGGCGC
TGGCGGCGGCGGGGATCGCCTCCGGGACGGCCTTCGGTTACATTTTGGAT
CTAGTCGGAGGGGTCTGTGGCTCGCTCGTCAGCTTTTGCTTTCCCGCGTT
GTTTTATCTTCGTGCGACCGGCGGCGAGGGGGAGTGGGCGGCGGCGTGCA
AGGTGCTGGCCGGCTTTGGGGCGTTTGCTATGGCGGCCACTGTGATCGCA
ACTCTTGCATGA
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