mRNA_P-wetherbeei_contig7318.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig7318.2.1
Unique NamemRNA_P-wetherbeei_contig7318.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig7318.2.1 vs. uniprot
Match: UPI001984F1E8 (Uncharacterized protein n=1 Tax=Candidatus Parcubacteria bacterium TaxID=2762014 RepID=UPI001984F1E8)

HSP 1 Score: 171 bits (433), Expect = 3.620e-51
Identity = 86/155 (55.48%), Postives = 118/155 (76.13%), Query Frame = 1
Query:   94 RTEELDGE-TVHYSIRAFPPGAHLADPAVQLEPASALNTARLLNRYLTSGAVEDAAMLSNAPRRRYEVLHDYKSAVGDDGFKQVYAQYFTPQNRLAAEVALGGHSLLVWHQREG-DRYAGQYYVQVEDKVLVDDVPSEARFRLRRILEAIRAGKV 552
            RT EL G  +V YS+R  P  AH+A    +L P SAL+ ARLLN +L +G +E+AA+LSN+PRRR+EVL DY+ +VG++ FK+V+A+YF P+NRL AE+A+G H LLVW  +EG  R AGQY+V++E + LVDDVP++AR  LR +LEA R+GK+
Sbjct:   19 RTLELTGGGSVTYSLRIHPANAHVARITGELAPTSALDAARLLNLHLAAGDIEEAALLSNSPRRRFEVLRDYRESVGEEEFKRVFARYFDPENRLLAEIAIGNHRLLVWDLKEGATRIAGQYFVEIEGRYLVDDVPNDARTSLRWVLEAYRSGKL 173          
BLAST of mRNA_P-wetherbeei_contig7318.2.1 vs. uniprot
Match: A0A522VTU0_9PROT (Uncharacterized protein n=1 Tax=Betaproteobacteria bacterium TaxID=1891241 RepID=A0A522VTU0_9PROT)

HSP 1 Score: 149 bits (376), Expect = 1.750e-42
Identity = 72/169 (42.60%), Postives = 107/169 (63.31%), Query Frame = 1
Query:   43 PVLLAYAALAPGQPLADRTEELDGETVHYSIRAFPPGAHLADPAVQLEPASALNTARLLNRYLTSGAVEDAAMLSNAPRRRYEVLHDYKSAVGDDGFKQVYAQYFTPQNRLAAEVALGGHSLLVWHQREGDRYAGQYYVQVEDKVLVDDVPSEARFRLRRILEAIRAGK 549
            P+L    ALA G       +  DG  + Y++R   P AHL DPA++L P  AL  A+L+ R+L +G VE+ ++LSNAP+ R+E L +  +    + F + + +YF P NR+A E A+G H LL+W+  + D   G ++V V+ K+L+DDVPSE R RLRR+LEA R+G+
Sbjct:    9 PLLWLCVALAAGGEETRVLDTEDGGQIRYTLRTHAPDAHLLDPALELAPVDALQAAKLVTRHLAAGRVEEVSLLSNAPKARFERLRESFAGWSAEDFARAFGRYFAPGNRIAGEAAIGDHRLLMWYLSDTDHLTGYFFVDVDGKLLLDDVPSETRTRLRRVLEAHRSGR 177          
BLAST of mRNA_P-wetherbeei_contig7318.2.1 vs. uniprot
Match: A0A1F4BJD8_9PROT (Uncharacterized protein n=1 Tax=Betaproteobacteria bacterium RIFCSPLOWO2_02_FULL_67_19 TaxID=1797491 RepID=A0A1F4BJD8_9PROT)

HSP 1 Score: 149 bits (375), Expect = 2.870e-42
Identity = 70/169 (41.42%), Postives = 107/169 (63.31%), Query Frame = 1
Query:   43 PVLLAYAALAPGQPLADRTEELDGETVHYSIRAFPPGAHLADPAVQLEPASALNTARLLNRYLTSGAVEDAAMLSNAPRRRYEVLHDYKSAVGDDGFKQVYAQYFTPQNRLAAEVALGGHSLLVWHQREGDRYAGQYYVQVEDKVLVDDVPSEARFRLRRILEAIRAGK 549
            P+LL + AL  G       E  DG  + Y++R + P AH  DPA+ L P  AL+ A+L+ R+L +G VE+ ++LS AP+ R+E L +  +    D F + + +YF P NR+  E A+G H LL+W+  + D   G ++ +V+ K+L+DDVPS+AR RLRR+LEA R+G+
Sbjct:   14 PLLLLFVALVAGGEETRVLETADGGQIRYTLRTYAPDAHRLDPAIGLAPTDALDVAKLVTRHLAAGRVEEVSLLSTAPKARFERLRESFAGWSLDDFARAFGRYFAPGNRIVGEAAIGNHRLLMWYLSDTDYVTGYFFAEVDGKLLLDDVPSDARTRLRRVLEAHRSGR 182          
BLAST of mRNA_P-wetherbeei_contig7318.2.1 vs. uniprot
Match: A0A521VGM2_9PROT (Uncharacterized protein n=1 Tax=Betaproteobacteria bacterium TaxID=1891241 RepID=A0A521VGM2_9PROT)

HSP 1 Score: 146 bits (368), Expect = 2.830e-41
Identity = 69/168 (41.07%), Postives = 107/168 (63.69%), Query Frame = 1
Query:   46 VLLAYAALAPGQPLADRTEELDGETVHYSIRAFPPGAHLADPAVQLEPASALNTARLLNRYLTSGAVEDAAMLSNAPRRRYEVLHDYKSAVGDDGFKQVYAQYFTPQNRLAAEVALGGHSLLVWHQREGDRYAGQYYVQVEDKVLVDDVPSEARFRLRRILEAIRAGK 549
            +LL + AL  G          DG  + Y++R+F P AH  DPA++L P  +L  A+L+ R+L +G VE+ ++LSNAP+ R+E L +  +    D F + + +YF P NR+  E A+G H LL+W+  + D   G ++V+V+ ++L+DDVPSEAR  LRR+LEA R+G+
Sbjct:   10 LLLLFVALLAGGEETRVLATQDGGQIRYTLRSFAPDAHRLDPAIELAPVDSLQAAKLVTRHLAAGRVEEVSLLSNAPKARFERLRESFAGWSADDFARAFGRYFAPGNRIVGEAAIGHHRLLMWYLGDTDDVTGYFFVEVDGRLLLDDVPSEARTSLRRVLEAHRSGR 177          
BLAST of mRNA_P-wetherbeei_contig7318.2.1 vs. uniprot
Match: A0A1F4F4M5_9PROT (Uncharacterized protein n=2 Tax=unclassified Betaproteobacteria TaxID=33809 RepID=A0A1F4F4M5_9PROT)

HSP 1 Score: 137 bits (346), Expect = 4.430e-38
Identity = 70/169 (41.42%), Postives = 108/169 (63.91%), Query Frame = 1
Query:   46 VLLAYAALAPGQPLADRTEEL-DGETVHYSIRAFPPGAHLADPAVQLEPASALNTARLLNRYLTSGAVEDAAMLSNAPRRRYEVLHDYKSAVGDDGFKQVYAQYFTPQNRLAAEVALGGHSLLVWHQREGDRYAGQYYVQVEDKVLVDDVPSEARFRLRRILEAIRAGK 549
            +LL  A +A  Q    R  EL DG  + Y++  FP  AH  + A  L P  AL+TA+L+ ++L +G +E+A++LSNAP+ RYE L +  +   +  F + Y +YF P+NR+  + A+G H LL+W+ ++ D   G + V+V+ K L+DDVPSE R RLR++LEA R+G+
Sbjct:    1 MLLFLATVAVAQET--RVLELEDGGRIRYTLSTFPADAHRLEAAAPLAPTDALSTAKLVTQHLAAGRIEEASLLSNAPKARYERLRESLADWTEADFARAYGRYFAPENRIIGDAAIGKHRLLMWYLKDTDYLTGYFVVEVDGKFLLDDVPSETRSRLRQVLEAHRSGR 167          
BLAST of mRNA_P-wetherbeei_contig7318.2.1 vs. uniprot
Match: A0A521Z441_9PROT (Uncharacterized protein n=1 Tax=Betaproteobacteria bacterium TaxID=1891241 RepID=A0A521Z441_9PROT)

HSP 1 Score: 126 bits (316), Expect = 1.020e-33
Identity = 71/152 (46.71%), Postives = 99/152 (65.13%), Query Frame = 1
Query:   91 DRTEEL-DGETVHYSIRAFPPGAHLADPAVQLEPASALNTARLLNRYLTSGAVEDAAMLSNAPRRRYEVLHDYKSAVGDDGFKQVYAQYFTPQNRLAAEVALGGHSLLVWHQRE-GDRYAGQYYVQVEDKVLVDDVPSEARFRLRRILEAIR 540
            DRT +L +GE +HY +        + +PA      SA  TA+ L ++L +G ++ AA LSNAP RRYEVL DY++ VG++ FK+VYAQY +P NRL  E A+G   LLVW   E G+  AGQYYV+V+ K L+DD  +E R +L R+L+ +R
Sbjct:   13 DRTLQLPNGEEIHYRV--------ITEPAE-----SARETAKQLLKHLAAGDIQGAAALSNAPMRRYEVLRDYRNQVGEEEFKRVYAQYQSPANRLFLEAAIGRRHLLVWDLGEAGNHLAGQYYVEVDGKFLLDDESNEERAQLARLLQTLR 151          
BLAST of mRNA_P-wetherbeei_contig7318.2.1 vs. uniprot
Match: A0A1F4ESB9_9PROT (Uncharacterized protein n=1 Tax=Betaproteobacteria bacterium RIFCSPLOWO2_12_FULL_65_14 TaxID=1797501 RepID=A0A1F4ESB9_9PROT)

HSP 1 Score: 124 bits (312), Expect = 4.590e-33
Identity = 74/167 (44.31%), Postives = 105/167 (62.87%), Query Frame = 1
Query:   46 VLLAYAALAPGQPLADRTEEL-DGETVHYSIRAFPPGAHLADPAVQLEPASALNTARLLNRYLTSGAVEDAAMLSNAPRRRYEVLHDYKSAVGDDGFKQVYAQYFTPQNRLAAEVALGGHSLLVWHQRE-GDRYAGQYYVQVEDKVLVDDVPSEARFRLRRILEAIR 540
            +LLA +A A  +   +RT  L DGE + Y +        + DPA      SA  T+  L R+L  G +E A+ +SNAP RRYEVL +Y SAVG++ FK+V+A+Y +P NR+  E A+G   L+VW   E G+   GQ+YV+V+ K L+DD P+E R +LRR+LEA+R
Sbjct:    5 LLLAVSAFALAE---ERTLRLPDGEELRYRV--------ITDPAE-----SARETSHQLLRHLADGNIEAASAMSNAPMRRYEVLREYASAVGEEEFKRVFARYQSPANRILLEAAIGQRRLVVWDLGEAGNHLVGQFYVRVDGKYLLDDEPNEERTQLRRVLEALR 155          
BLAST of mRNA_P-wetherbeei_contig7318.2.1 vs. uniprot
Match: A0A1F4F1J1_9PROT (Uncharacterized protein n=1 Tax=Betaproteobacteria bacterium RIFCSPLOWO2_12_FULL_68_20 TaxID=1797505 RepID=A0A1F4F1J1_9PROT)

HSP 1 Score: 118 bits (295), Expect = 2.210e-30
Identity = 59/149 (39.60%), Postives = 90/149 (60.40%), Query Frame = 1
Query:   97 TEELDGETVHYSIRAFPPGAHLADPAVQLEPASALNTARLLNRYLTSGAVEDAAMLSNAPRRRYEVLHDYKSAVGDDGFKQVYAQYFTPQNRLAAEVALGGHSLLVWHQREGDRYAGQYYVQVEDKVLVDDVPSEARFRLRRILEAIRA 543
            ++ L+ E    ++R F   AHL DP  +L+P+SALN A+L  RYL+ G +E+ A+LSNAP+ R++ L +       + F++ Y  +F   + +  EVA G H L++W + +    AG   V++  K  +DDVPS  R RLRRILE+ RA
Sbjct:    8 SQTLEREAESDALREFAADAHLLDPNEKLQPSSALNAAKLATRYLSEGRLEEVALLSNAPKARFDRLREALQGWAPEDFRRAYGPFFDADSWIVGEVAQGPHHLIMWRRGDLGHIAGYLLVEIGGKYFLDDVPSPERSRLRRILESFRA 156          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig7318.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 8
Match NameE-valueIdentityDescription
UPI001984F1E83.620e-5155.48Uncharacterized protein n=1 Tax=Candidatus Parcuba... [more]
A0A522VTU0_9PROT1.750e-4242.60Uncharacterized protein n=1 Tax=Betaproteobacteria... [more]
A0A1F4BJD8_9PROT2.870e-4241.42Uncharacterized protein n=1 Tax=Betaproteobacteria... [more]
A0A521VGM2_9PROT2.830e-4141.07Uncharacterized protein n=1 Tax=Betaproteobacteria... [more]
A0A1F4F4M5_9PROT4.430e-3841.42Uncharacterized protein n=2 Tax=unclassified Betap... [more]
A0A521Z441_9PROT1.020e-3346.71Uncharacterized protein n=1 Tax=Betaproteobacteria... [more]
A0A1F4ESB9_9PROT4.590e-3344.31Uncharacterized protein n=1 Tax=Betaproteobacteria... [more]
A0A1F4F1J1_9PROT2.210e-3039.60Uncharacterized protein n=1 Tax=Betaproteobacteria... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig7318contigP-wetherbeei_contig7318:1892..2443 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size552
Hectar predicted targeting categoryother localisation
Exons1
Cds size552
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186971.9289863-CDS-P-wetherbeei_contig7318:1891..24431683186971.9289863-CDS-P-wetherbeei_contig7318:1891..2443Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig7318 1892..2443 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig7318.2.1prot_P-wetherbeei_contig7318.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig7318 1892..2443 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig7318.2.1

>prot_P-wetherbeei_contig7318.2.1 ID=prot_P-wetherbeei_contig7318.2.1|Name=mRNA_P-wetherbeei_contig7318.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=184bp
LVPAVKPNGKWWTVPVLLAYAALAPGQPLADRTEELDGETVHYSIRAFPP
GAHLADPAVQLEPASALNTARLLNRYLTSGAVEDAAMLSNAPRRRYEVLH
DYKSAVGDDGFKQVYAQYFTPQNRLAAEVALGGHSLLVWHQREGDRYAGQ
YYVQVEDKVLVDDVPSEARFRLRRILEAIRAGKV
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mRNA from alignment at P-wetherbeei_contig7318:1892..2443+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig7318.2.1 ID=mRNA_P-wetherbeei_contig7318.2.1|Name=mRNA_P-wetherbeei_contig7318.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=552bp|location=Sequence derived from alignment at P-wetherbeei_contig7318:1892..2443+ (Phaeothamnion wetherbeei SAG_119_79)
CTGGTGCCGGCCGTGAAGCCCAACGGGAAATGGTGGACCGTGCCGGTCCT CCTCGCGTACGCGGCGCTCGCGCCCGGCCAGCCGCTGGCCGACCGCACGG AGGAACTCGACGGCGAGACGGTCCACTACTCGATTCGCGCGTTCCCGCCG GGAGCCCACCTCGCCGACCCGGCCGTGCAGCTCGAGCCGGCCAGCGCGCT GAACACCGCCCGCCTGCTGAACCGGTACCTGACCTCGGGCGCCGTGGAAG ACGCCGCGATGCTCTCCAACGCGCCGCGCCGCCGGTACGAGGTCCTGCAC GACTACAAGAGCGCGGTCGGGGACGACGGATTCAAGCAGGTGTACGCGCA ATACTTCACGCCGCAGAACCGGCTCGCCGCGGAAGTGGCCCTGGGCGGGC ACAGCCTGCTCGTCTGGCACCAGCGCGAGGGCGACCGCTACGCGGGCCAG TACTACGTGCAGGTCGAGGACAAGGTGCTGGTGGACGACGTGCCGAGCGA AGCCCGGTTCAGGCTGCGTCGCATCCTGGAAGCGATCCGCGCCGGGAAGG TC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig7318:1892..2443+

>mRNA_P-wetherbeei_contig7318.2.1 ID=mRNA_P-wetherbeei_contig7318.2.1|Name=mRNA_P-wetherbeei_contig7318.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=552bp|location=Sequence derived from alignment at P-wetherbeei_contig7318:1892..2443+ (Phaeothamnion wetherbeei SAG_119_79)
CTGGTGCCGGCCGTGAAGCCCAACGGGAAATGGTGGACCGTGCCGGTCCT
CCTCGCGTACGCGGCGCTCGCGCCCGGCCAGCCGCTGGCCGACCGCACGG
AGGAACTCGACGGCGAGACGGTCCACTACTCGATTCGCGCGTTCCCGCCG
GGAGCCCACCTCGCCGACCCGGCCGTGCAGCTCGAGCCGGCCAGCGCGCT
GAACACCGCCCGCCTGCTGAACCGGTACCTGACCTCGGGCGCCGTGGAAG
ACGCCGCGATGCTCTCCAACGCGCCGCGCCGCCGGTACGAGGTCCTGCAC
GACTACAAGAGCGCGGTCGGGGACGACGGATTCAAGCAGGTGTACGCGCA
ATACTTCACGCCGCAGAACCGGCTCGCCGCGGAAGTGGCCCTGGGCGGGC
ACAGCCTGCTCGTCTGGCACCAGCGCGAGGGCGACCGCTACGCGGGCCAG
TACTACGTGCAGGTCGAGGACAAGGTGCTGGTGGACGACGTGCCGAGCGA
AGCCCGGTTCAGGCTGCGTCGCATCCTGGAAGCGATCCGCGCCGGGAAGG
TC
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