mRNA_P-wetherbeei_contig7308.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig7308.1.1
Unique NamemRNA_P-wetherbeei_contig7308.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig7308.1.1 vs. uniprot
Match: A0A2D4BQF4_PYTIN (Uncharacterized protein n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BQF4_PYTIN)

HSP 1 Score: 62.8 bits (151), Expect = 3.970e-10
Identity = 26/61 (42.62%), Postives = 39/61 (63.93%), Query Frame = 2 
Query:  275 ELAKWRRTSGGMVALCGVVAAYCVVAHNMHHHDHEEVPEYSWQHIRNKPYPWHCSDCSALD 457
            ++A+W + S GM+ L  V  A   V+H   H  HEE P++++  +RNKP+PWH S+C  LD
Sbjct:   12 QMARWTQISKGMMGLTAVYTAVQFVSHFGGHEHHEEAPKFAYLKLRNKPFPWHYSNCDLLD 72
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BLAST of mRNA_P-wetherbeei_contig7308.1.1 vs. uniprot
Match: A0A421FMQ2_9STRA (Lipase_3 domain-containing protein n=5 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A421FMQ2_9STRA)

HSP 1 Score: 62.4 bits (150), Expect = 2.070e-8
Identity = 26/61 (42.62%), Postives = 36/61 (59.02%), Query Frame = 2 
Query:  275 ELAKWRRTSGGMVALCGVVAAYCVVAHNMHHHDHEEVPEYSWQHIRNKPYPWHCSDCSALD 457
            ++ +W   S GM+ +  V   Y  V H  H H H+EVP+Y +  +RNKP+PW  SDC  LD
Sbjct:  746 QMHRWTTISKGMIGVVAVFTTYTAVDHMNHGHHHDEVPDYPYLKMRNKPFPWPESDCDWLD 806
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BLAST of mRNA_P-wetherbeei_contig7308.1.1 vs. uniprot
Match: A0A7S0EE19_9CRYP (Hypothetical protein n=1 Tax=Hanusia phi TaxID=3032 RepID=A0A7S0EE19_9CRYP)

HSP 1 Score: 52.0 bits (123), Expect = 9.650e-6
Identity = 25/62 (40.32%), Postives = 34/62 (54.84%), Query Frame = 2 
Query:  287 WRRTSGGMVALCGVVAAYCVVAHNMHHHDHEEVPE---YSWQHIRNKPYPWHCSDCSALDRE 463
            W+  S G + L GVV A+    H  HH+D    PE   + +  +RNK +PW CSDC+  D E
Sbjct:   46 WKNVSLGGLVLVGVVGAWEYKVHLDHHNDPHADPEKNNFPYIRVRNKEFPWSCSDCNLFDSE 107
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BLAST of mRNA_P-wetherbeei_contig7308.1.1 vs. uniprot
Match: A0A7S3Y541_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y541_HETAK)

HSP 1 Score: 53.9 bits (128), Expect = 1.660e-5
Identity = 25/62 (40.32%), Postives = 32/62 (51.61%), Query Frame = 2 
Query:  278 LAKWRRTSGGMVALCGVVAAYCVVAHNMHHHDHEEVPEYS--WQHIRNKPYPWHCSDCSALD 457
            + KW++ S GMVA  GVV     + H+MH             +  IRNKPYPW C+DC   D
Sbjct:    1 MVKWKKMSQGMVAFMGVVGVLTAIQHSMHXXXXXXXXXXXXXYMKIRNKPYPWTCTDCDFFD 62
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BLAST of mRNA_P-wetherbeei_contig7308.1.1 vs. uniprot
Match: A0A7S4DCJ6_HETAK (Hypothetical protein (Fragment) n=5 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4DCJ6_HETAK)

HSP 1 Score: 53.9 bits (128), Expect = 1.670e-5
Identity = 25/62 (40.32%), Postives = 32/62 (51.61%), Query Frame = 2 
Query:  278 LAKWRRTSGGMVALCGVVAAYCVVAHNMHHHDHEEVPEYS--WQHIRNKPYPWHCSDCSALD 457
            + KW++ S GMVA  GVV     + H+MH             +  IRNKPYPW C+DC   D
Sbjct:    1 MVKWKKMSQGMVAFMGVVGVLTAIQHSMHXXXXXXXXXXXXXYMKIRNKPYPWTCTDCDFFD 62
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BLAST of mRNA_P-wetherbeei_contig7308.1.1 vs. uniprot
Match: A0A4D9D930_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9D930_9STRA)

HSP 1 Score: 50.1 bits (118), Expect = 4.940e-5
Identity = 26/68 (38.24%), Postives = 37/68 (54.41%), Query Frame = 2 
Query:  269 AVELAKWRRTS---GGMVALCGVVAAYCVVAHNMHHHDHEEVPEYSWQHIRNKPYPWHCSDCSALDRE 463
            A E+ KWR+ S    G+V L        + +H    H  + +P+Y   HIR+KP+PW CSDCS  D +
Sbjct:   31 ADEVDKWRKISIVATGVVILMSGRELLSLSSHGHGEHSDKPLPDY--MHIRSKPFPWECSDCSLFDTD 96
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig7308.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
A0A2D4BQF4_PYTIN3.970e-1042.62Uncharacterized protein n=1 Tax=Pythium insidiosum... [more]
A0A421FMQ2_9STRA2.070e-842.62Lipase_3 domain-containing protein n=5 Tax=Phytoph... [more]
A0A7S0EE19_9CRYP9.650e-640.32Hypothetical protein n=1 Tax=Hanusia phi TaxID=303... [more]
A0A7S3Y541_HETAK1.660e-540.32Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A7S4DCJ6_HETAK1.670e-540.32Hypothetical protein (Fragment) n=5 Tax=Heterosigm... [more]
A0A4D9D930_9STRA4.940e-538.24Uncharacterized protein n=1 Tax=Nannochloropsis sa... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig7308contigP-wetherbeei_contig7308:1507..1972 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog325452.fgenesh_scip_prom.46568.862
PFAMsAnk_2,Lipase_3
Model size466
Max annot lvl4776|Peronosporales
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Evalue4.45e-08
EggNOG OGsKOG4569@1|root,KOG4569@2759|Eukaryota,3Q945@4776|Peronosporales
Ec32 ortholog descriptioncytochrome c oxidase subunit VIa
Ec32 orthologEc-07_006760.1
DescriptionLipase (class 3)
Cds size159
COG categoryI
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186971.5889325-UTR-P-wetherbeei_contig7308:1506..18131683186971.5889325-UTR-P-wetherbeei_contig7308:1506..1813Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig7308 1507..1813 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186971.6020484-CDS-P-wetherbeei_contig7308:1813..19721683186971.6020484-CDS-P-wetherbeei_contig7308:1813..1972Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig7308 1814..1972 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig7308.1.1prot_P-wetherbeei_contig7308.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig7308 1814..1972 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig7308.1.1

>prot_P-wetherbeei_contig7308.1.1 ID=prot_P-wetherbeei_contig7308.1.1|Name=mRNA_P-wetherbeei_contig7308.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=53bp
MVALCGVVAAYCVVAHNMHHHDHEEVPEYSWQHIRNKPYPWHCSDCSALD
RE*
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mRNA from alignment at P-wetherbeei_contig7308:1507..1972+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig7308.1.1 ID=mRNA_P-wetherbeei_contig7308.1.1|Name=mRNA_P-wetherbeei_contig7308.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=466bp|location=Sequence derived from alignment at P-wetherbeei_contig7308:1507..1972+ (Phaeothamnion wetherbeei SAG_119_79)
CGCACGGCGCTGCGTACGGCTGCCCGCCGGCCTACGTTGGCGACGCTTCC
GAAACGCCACATGTCCGGCAGCCAAGAAGAAGCATTGGGTGAGTCTTTTC
CTCTTACGTCGACACGTCTTCAGTTCACGTGGGCGACCGCAAAGTGTCAG
GATCGCTAGTCCGCTCCCCGCTTCGATTTCTCCTCCGTCCAAAACTGAGT
TGTAATGAAATTCACTTCTTGTTGCCAGACTTCACACCCAGCTTTCCTGC
CGCGTCCTCGCAAAAATTGCAGTCGAGCTGGCGAAGTGGCGCCGCACCTC
CGGCGGCATGGTGGCCCTGTGCGGGGTGGTGGCCGCCTACTGCGTGGTCG
CACACAACATGCACCACCACGACCACGAGGAGGTGCCCGAATACTCGTGG
CAGCACATCCGCAACAAGCCCTACCCGTGGCACTGCAGTGACTGCTCCGC
CCTTGACCGAGAGTGA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig7308:1507..1972+

>mRNA_P-wetherbeei_contig7308.1.1 ID=mRNA_P-wetherbeei_contig7308.1.1|Name=mRNA_P-wetherbeei_contig7308.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=159bp|location=Sequence derived from alignment at P-wetherbeei_contig7308:1507..1972+ (Phaeothamnion wetherbeei SAG_119_79)
ATGGTGGCCCTGTGCGGGGTGGTGGCCGCCTACTGCGTGGTCGCACACAA
CATGCACCACCACGACCACGAGGAGGTGCCCGAATACTCGTGGCAGCACA
TCCGCAACAAGCCCTACCCGTGGCACTGCAGTGACTGCTCCGCCCTTGAC
CGAGAGTGA
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