mRNA_P-wetherbeei_contig7300.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig7300.2.1
Unique NamemRNA_P-wetherbeei_contig7300.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig7300.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig7300contigP-wetherbeei_contig7300:1990..3128 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1139
Hectar predicted targeting categoryother localisation
Exons1
Cds size1035
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186971.2981188-UTR-P-wetherbeei_contig7300:1989..20641683186971.2981188-UTR-P-wetherbeei_contig7300:1989..2064Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig7300 1990..2064 -
1683186971.3181012-UTR-P-wetherbeei_contig7300:3099..31281683186971.3181012-UTR-P-wetherbeei_contig7300:3099..3128Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig7300 3100..3128 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186971.3082972-CDS-P-wetherbeei_contig7300:2064..30991683186971.3082972-CDS-P-wetherbeei_contig7300:2064..3099Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig7300 2065..3099 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig7300.2.1prot_P-wetherbeei_contig7300.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig7300 2065..3099 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig7300.2.1

>prot_P-wetherbeei_contig7300.2.1 ID=prot_P-wetherbeei_contig7300.2.1|Name=mRNA_P-wetherbeei_contig7300.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=345bp
MRRAGNRRRAGTGGGGGGGGYAARGGGGGYGGGTGGYGGGGGYGGGGAAG
GGRYGTAAGVGGYQTAPPPPPPAVAAPPVIINKTTVVQQQQQVRRGPSPL
LPFVAGMAIGARAGRAPARYPSAPPPPHGVPPAGAPSAAVTTPAPQQPPT
VVYIDRSGQRVETTINRLLVIFTRAGGLRNVKSFGTQSPYVEATLMCRGA
RMAAANTGVHKGGGKDPSFETRDNVLTFMVPATVALSELRLVMEIKHKRN
FFGKDTFIGAAAPFDLEAACGSRAHIQLDVNSGGWLEASFDYLREDGGGG
APVPAPAVPAVAEQDGGGGRSDKAEKAVPLVEAFPVEDAPKHTA*
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mRNA from alignment at P-wetherbeei_contig7300:1990..3128-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig7300.2.1 ID=mRNA_P-wetherbeei_contig7300.2.1|Name=mRNA_P-wetherbeei_contig7300.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1139bp|location=Sequence derived from alignment at P-wetherbeei_contig7300:1990..3128- (Phaeothamnion wetherbeei SAG_119_79)
AGCCTGCAAAAGTAGAGGGGACTTGAGCTATGCGACGAGCAGGTAACCGT
CGCCGTGCTGGCACGGGGGGGGGCGGCGGCGGCGGCGGGTATGCCGCCCG
CGGCGGCGGTGGGGGCTACGGCGGCGGCACCGGAGGCTACGGCGGCGGTG
GCGGCTACGGTGGGGGCGGAGCTGCTGGTGGTGGACGTTATGGCACAGCG
GCCGGCGTTGGCGGGTACCAGACCGCGCCGCCGCCGCCGCCGCCGGCGGT
GGCGGCTCCTCCTGTCATCATTAACAAGACCACTGTCGTGCAGCAGCAGC
AGCAAGTGCGGCGCGGCCCGTCCCCCCTTCTGCCCTTCGTGGCCGGCATG
GCCATCGGCGCCCGCGCCGGACGCGCCCCGGCGCGGTACCCATCGGCGCC
GCCACCACCGCACGGCGTGCCGCCTGCCGGCGCCCCGTCCGCCGCCGTCA
CGACACCCGCCCCGCAGCAGCCGCCCACGGTCGTCTACATCGACCGGAGT
GGGCAGCGCGTTGAGACGACCATTAACCGCCTCCTCGTCATCTTCACCCG
CGCCGGCGGCCTACGCAACGTCAAGTCGTTCGGCACGCAGAGCCCCTACG
TGGAGGCGACTCTGATGTGCCGCGGCGCTCGCATGGCAGCCGCCAACACG
GGCGTTCATAAGGGCGGCGGCAAGGACCCGTCCTTCGAGACGCGCGATAA
CGTGCTGACCTTCATGGTGCCAGCGACGGTGGCACTCAGCGAGCTGCGGC
TGGTTATGGAGATCAAGCACAAGCGGAACTTCTTTGGCAAGGACACATTC
ATCGGCGCCGCGGCCCCCTTCGACCTGGAAGCGGCCTGCGGCAGCCGGGC
GCACATCCAGCTCGACGTAAACAGCGGCGGTTGGCTCGAGGCTTCGTTCG
ATTATCTGCGGGAAGACGGCGGCGGCGGCGCTCCGGTGCCAGCGCCGGCG
GTGCCAGCGGTGGCGGAGCAGGACGGCGGTGGCGGCCGCAGCGATAAGGC
AGAGAAGGCTGTGCCGCTTGTGGAGGCGTTCCCGGTGGAGGACGCTCCCA
AGCACACCGCGTAAGTTTTAAAGATGGAGAAGGAGAGGGATTGGAGTGAA
TCGCTTTGGATGTCCGAGGTTGCACTTCTCATGGTTACG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig7300:1990..3128-

>mRNA_P-wetherbeei_contig7300.2.1 ID=mRNA_P-wetherbeei_contig7300.2.1|Name=mRNA_P-wetherbeei_contig7300.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=1035bp|location=Sequence derived from alignment at P-wetherbeei_contig7300:1990..3128- (Phaeothamnion wetherbeei SAG_119_79)
ATGCGACGAGCAGGTAACCGTCGCCGTGCTGGCACGGGGGGGGGCGGCGG
CGGCGGCGGGTATGCCGCCCGCGGCGGCGGTGGGGGCTACGGCGGCGGCA
CCGGAGGCTACGGCGGCGGTGGCGGCTACGGTGGGGGCGGAGCTGCTGGT
GGTGGACGTTATGGCACAGCGGCCGGCGTTGGCGGGTACCAGACCGCGCC
GCCGCCGCCGCCGCCGGCGGTGGCGGCTCCTCCTGTCATCATTAACAAGA
CCACTGTCGTGCAGCAGCAGCAGCAAGTGCGGCGCGGCCCGTCCCCCCTT
CTGCCCTTCGTGGCCGGCATGGCCATCGGCGCCCGCGCCGGACGCGCCCC
GGCGCGGTACCCATCGGCGCCGCCACCACCGCACGGCGTGCCGCCTGCCG
GCGCCCCGTCCGCCGCCGTCACGACACCCGCCCCGCAGCAGCCGCCCACG
GTCGTCTACATCGACCGGAGTGGGCAGCGCGTTGAGACGACCATTAACCG
CCTCCTCGTCATCTTCACCCGCGCCGGCGGCCTACGCAACGTCAAGTCGT
TCGGCACGCAGAGCCCCTACGTGGAGGCGACTCTGATGTGCCGCGGCGCT
CGCATGGCAGCCGCCAACACGGGCGTTCATAAGGGCGGCGGCAAGGACCC
GTCCTTCGAGACGCGCGATAACGTGCTGACCTTCATGGTGCCAGCGACGG
TGGCACTCAGCGAGCTGCGGCTGGTTATGGAGATCAAGCACAAGCGGAAC
TTCTTTGGCAAGGACACATTCATCGGCGCCGCGGCCCCCTTCGACCTGGA
AGCGGCCTGCGGCAGCCGGGCGCACATCCAGCTCGACGTAAACAGCGGCG
GTTGGCTCGAGGCTTCGTTCGATTATCTGCGGGAAGACGGCGGCGGCGGC
GCTCCGGTGCCAGCGCCGGCGGTGCCAGCGGTGGCGGAGCAGGACGGCGG
TGGCGGCCGCAGCGATAAGGCAGAGAAGGCTGTGCCGCTTGTGGAGGCGT
TCCCGGTGGAGGACGCTCCCAAGCACACCGCGTAA
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