mRNA_P-wetherbeei_contig7299.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig7299.1.1
Unique NamemRNA_P-wetherbeei_contig7299.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig7299.1.1 vs. uniprot
Match: A0A061RHZ8_9CHLO (Uncharacterized protein n=1 Tax=Tetraselmis sp. GSL018 TaxID=582737 RepID=A0A061RHZ8_9CHLO)

HSP 1 Score: 192 bits (489), Expect = 4.160e-56
Identity = 92/176 (52.27%), Postives = 113/176 (64.20%), Query Frame = 3
Query:   69 VCGHNHVSYESKEAAVLAGATVMHCGNCGKCSNRDDIDIYERTKDTLTYTTTRCAYAYLVLGRWAAAACMRRSVGFTDSCNECWLDNIECDM-RECLWICLKHTLAGSANNLEGEELNACLACDEEQCGPVFIQCAGANRRRSGIISDIGRPNEQVCTDVDPWPAGGRDRAAGRQR 593
            VCG + V+Y SKE A   G   +H GNCG+CSNR DI IY  TK+TLT T   CAY  L++G WA   CM+ +V FTD C ECW+DNI+CD+   CLW+CLK +L     NL    LN CL CDE+ CGP F++CAGANRRRSGI SDI RP ++V      W     DR   R++
Sbjct:   27 VCGEDGVTYVSKEDAHAHGVLAIHSGNCGRCSNRQDIQIYNSTKNTLTTTAKLCAYLTLLVGEWAGRRCMK-TVNFTDGCRECWMDNIKCDIGSRCLWVCLKSSLKLEPRNLPDGRLNDCLQCDEDVCGPAFLKCAGANRRRSGIRSDIDRPEDEV------WEGDDLDRVLDRKK 195          
BLAST of mRNA_P-wetherbeei_contig7299.1.1 vs. uniprot
Match: A0A7S1SVQ4_9CHLO (Hypothetical protein n=1 Tax=Tetraselmis chuii TaxID=63592 RepID=A0A7S1SVQ4_9CHLO)

HSP 1 Score: 171 bits (434), Expect = 1.730e-47
Identity = 82/164 (50.00%), Postives = 100/164 (60.98%), Query Frame = 3
Query:   78 HNHVSYESKEAAVLAGATVMHCGNCGKCSNRDDIDIYERTKDTLTYTTTRCAYAYLVLGRWAAAACMRRSVGFTDSCNECWLDNIECDMRECLWICLKHTLAGSANNLEGEELNACLACDEEQCGPVFIQCAGANRRRSGIISDIGRPN-EQVCTDVDP-WPAG 563
            +N+ +Y + EAA      V HCG+CG CS   DIDI + TK++LT T TRCA      GR A   C    VGFT  C  CW+DN+ C    C++ CL+  +   +NN E  ELN CL CDE+ CGP FI CAGANRRRSGI+SDIGR N  +VC  VD  W  G
Sbjct:   81 NNYTTYNNVEAAHANDGLVRHCGDCGDCSTARDIDILDVTKNSLTKTATRCAVQKFFGGRAAVERCFDSDVGFTPPCTTCWVDNVMCTQNACVFNCLRSLILRESNNAESGELNRCLECDEKMCGPAFILCAGANRRRSGIVSDIGRDNLAEVCKKVDEDWAVG 244          
BLAST of mRNA_P-wetherbeei_contig7299.1.1 vs. uniprot
Match: A0A7S4RSG6_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4RSG6_9STRA)

HSP 1 Score: 165 bits (418), Expect = 1.580e-44
Identity = 78/160 (48.75%), Postives = 105/160 (65.62%), Query Frame = 3
Query:   81 NHVSYESKEAAVLAGATVMHCGNCGKCSNRDDIDIYERTKDTLTYTTTRCAYAYLVLGRWAAAACMRRSVGFTDSCNECWLDNIECDMRECLWICLKHTLAGS--ANNLEGEE-LNACLACDEEQCGPVFIQCAGANRRRSGIISDIGRPNE-QVCTDVD 548
            +H          +  A V +CG CG+CSN  D+ IY+ TK+TLT    RCAY  L+ GR  +  CMR++VGFTDSCNECW+DNI CDM++C ++C+ + + G    +   G+E LN C  CDE++CG  F  CAGANRRRSGIISDI R ++ ++CT  D
Sbjct:  110 SHADELKSSGVEVDDAVVANCGTCGQCSNPHDVGIYDDTKNTLTGDAKRCAYRALIGGRGPSTDCMRKNVGFTDSCNECWVDNIMCDMKKCAFVCMWNEIFGRQFGHTSGGKEILNPCKTCDEKRCGRAFTNCAGANRRRSGIISDIARDDKNELCTVAD 269          
BLAST of mRNA_P-wetherbeei_contig7299.1.1 vs. uniprot
Match: A0A6U1RQQ2_CYCTE (Hypothetical protein n=1 Tax=Cyclophora tenuis TaxID=216820 RepID=A0A6U1RQQ2_CYCTE)

HSP 1 Score: 161 bits (408), Expect = 3.210e-43
Identity = 76/148 (51.35%), Postives = 98/148 (66.22%), Query Frame = 3
Query:  132 VMHCGNCGKCSNRDDIDIYERTKDTLTYTTTRCAYAYLVLGRWAAAACMRRSVGFTDSCNECWLDNIECDMRECLWICL---------KHTLAGSANNLEGEELNACLACDEEQCGPVFIQCAGANRRRSGIISDIGRPN-EQVCTDV 545
            V+HC +CG CSN  DI IY  T++TLT TT +CA   L+ GR  A  CM RSVGFT  C  CW++NI CD++ C++IC+         K ++AG  +     EL  C  CDE++CGP FIQCAGANRRRSGI+SDI R +  +VCTD+
Sbjct:  101 VVHCESCGSCSNSHDIAIYYDTRNTLTETTVQCAKQSLIWGRRTANKCMERSVGFTQPCQYCWVENILCDLKYCVFICMWSRLFSLRTKSSVAGGKDGAAPRELTPCTKCDEKRCGPQFIQCAGANRRRSGIVSDIQRDDAHEVCTDI 248          
BLAST of mRNA_P-wetherbeei_contig7299.1.1 vs. uniprot
Match: A0A1Z5JSM5_FISSO (Uncharacterized protein n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5JSM5_FISSO)

HSP 1 Score: 156 bits (395), Expect = 2.040e-41
Identity = 71/143 (49.65%), Postives = 95/143 (66.43%), Query Frame = 3
Query:  129 TVMHCGNCGKCSNRDDIDIYERTKDTLTYTTTRCAYAYLVLGRWAAAACMRRSVGFTDSCNECWLDNIECDMRECLWICLKHTLAGSANNLEGEE-LNACLACDEEQCGPVFIQCAGANRRRSGIISDIGRP-NEQVCTDVDP 551
            TV HCG+CGKCSN  D++IY+ TK+TL  TT  C     + GR  A  CM  +VGFT+ CNECW++NI CD+R C++ C+ + L   AN  + ++ LN C  CDE +CGP F+ CAG NRRR+GI+SDI R    +VC +  P
Sbjct:  112 TVAHCGDCGKCSNPHDVNIYDDTKNTLFDTTLTCGKRAFIWGRRTADKCMMENVGFTEPCNECWVENILCDLRYCIFTCIWYGLFNEANTGQDQKTLNPCTRCDELRCGPEFVTCAGVNRRRAGILSDIERDLKNEVCHEAAP 254          
BLAST of mRNA_P-wetherbeei_contig7299.1.1 vs. uniprot
Match: A0A835YBJ5_9CHLO (Uncharacterized protein n=1 Tax=Edaphochlamys debaryana TaxID=47281 RepID=A0A835YBJ5_9CHLO)

HSP 1 Score: 155 bits (391), Expect = 2.090e-41
Identity = 76/173 (43.93%), Postives = 103/173 (59.54%), Query Frame = 3
Query:   30 GLRPAVADIDEGRVCGHNHVSYESKEAAVLAGATVMHCGNCGKCSNRDDIDIYERTKDTLTYTTTRCAYAYLVLGRWAAAACMRRSVGFTDSCNECWLDNIECDMRECLWICLKHTLAGSANNLEGEE----LNACLACDEEQCGPVFIQCAGANRRRSGIISDIGRPNEQVC 536
            GL P   D    RVCG +  +Y S + A  AG  V++CG CG+CSN+ D+D+Y RT+  LT     C    +   R     C+  ++GFT  C  C+ +NI+CD + CLW CL +T+        G++     N CLACDE  CGP F++CAGANRRRSGIISDI R +++VC
Sbjct:   49 GLAPGYRD---PRVCGVDGTTYASADEAKAAGTQVLNCGPCGECSNQQDLDLYLRTRTNLTVLVRACGMRLIAKRR---DKCLE-ALGFTPGCQRCYAENIQCDKKHCLWPCLVYTVRSWIWPAHGQQESLHSNPCLACDEANCGPAFLECAGANRRRSGIISDISRDDKEVC 214          
BLAST of mRNA_P-wetherbeei_contig7299.1.1 vs. uniprot
Match: A0A7S1D0G0_CYCTE (Hypothetical protein n=1 Tax=Cyclophora tenuis TaxID=216820 RepID=A0A7S1D0G0_CYCTE)

HSP 1 Score: 149 bits (377), Expect = 1.900e-40
Identity = 64/136 (47.06%), Postives = 90/136 (66.18%), Query Frame = 3
Query:  144 GNCGKCSNRDDIDIYERTKDTLTYTTTRCAYAYLVLGRWAAAACMRRSVGFTDSCNECWLDNIECDMRECLWICLKHTLAGSANNLEGEELNACLACDEEQCGPVFIQCAGANRRRSGIISDIGRPNE-QVCTDVD 548
            G+CG+CS   D+ +  +T++TLT+ +T CA    V G+ A + C+ R VGFT  CN CW+DNI+C  + C + CLK+ L G +NN +   LN+CL CDE  CGP F+ C+GANRRR G++SDIGR  + + C   D
Sbjct:    1 GSCGQCSTVHDMSVMGQTRNTLTHDSTMCAMLIFVGGKRAVSKCLGRKVGFTKPCNNCWVDNIKCTFQSCKFTCLKYKLFGESNNSDDGNLNSCLQCDERMCGPEFLSCSGANRRRMGVVSDIGRDQDSEQCKVTD 136          
BLAST of mRNA_P-wetherbeei_contig7299.1.1 vs. uniprot
Match: A0A813LMN6_POLGL (Hypothetical protein n=1 Tax=Polarella glacialis TaxID=89957 RepID=A0A813LMN6_POLGL)

HSP 1 Score: 153 bits (387), Expect = 4.460e-40
Identity = 72/157 (45.86%), Postives = 94/157 (59.87%), Query Frame = 3
Query:   69 VCGHNHVSYESKEAAVLAGATVMHCGNCGKCSNRDDIDIYERTKDTLTYTTTRCAYAYLVLGRWAAAACMRRSVGFTDSCNECWLDNIECDMRECLWICLKHTLAGSANNLEGE-ELNACLACDEEQCGPVFIQCAGANRRRSGIISDIGRPNEQVC 536
            VCG +  ++ S   A  AG  V++CG CG CS   DI +Y  T +TLT   TRCA  + +LG      C  + + FT  C +CW++N+ CD R C W CL+  L G   N  G+ +LN CL CDEE CGP F +CA ANRR SG++SDIGR + Q C
Sbjct:  131 VCGASGQTHVSLLLARAAGDEVVNCGACGACSTSHDISVYSSTLETLTDKATRCAL-WSLLGEGGVRDCFAQQIQFTKPCEDCWVENVMCDQRNCKWTCLQMVLTGQRKNAGGDGKLNDCLECDEELCGPAFYRCARANRRTSGLVSDIGRKSVQNC 286          
BLAST of mRNA_P-wetherbeei_contig7299.1.1 vs. uniprot
Match: A0A835T1V2_CHLIN (Uncharacterized protein n=1 Tax=Chlamydomonas incerta TaxID=51695 RepID=A0A835T1V2_CHLIN)

HSP 1 Score: 150 bits (378), Expect = 5.810e-40
Identity = 75/165 (45.45%), Postives = 95/165 (57.58%), Query Frame = 3
Query:   60 EGRVCGHNHVSYESKEAAVLAGATVMHCGNCGKCSNRDDIDIYERTKDTLTYTTTRCAYAYLVLGRWAAAACMRRSVGFTDSCNECWLDNIECDMRECLWICLKHTL----AGSANNLEGEEL--NACLACDEEQCGPVFIQCAGANRRRSGIISDIGRPNEQVC 536
            + RVCG + V+Y    AA LAG  V++CG CG+CSN  D+ +Y  T   LT     C    L   R    A     +GF+  C  C+  NI+CD R CLW CL++TL    +G     + E L  N CLACDE  CGP F+ CAGANRRR+GI+SDIGR   +VC
Sbjct:   17 DARVCGVDGVTYAHPSAAALAGVAVLNCGACGECSNEQDVGVYLATAADLTVRVRACGMRLLAKRRDRCLA----DLGFSPGCAACFAANIDCDRRHCLWPCLRYTLRSWFSGPPRGGQQETLGSNPCLACDERVCGPAFLACAGANRRRAGIVSDIGRSGAEVC 177          
BLAST of mRNA_P-wetherbeei_contig7299.1.1 vs. uniprot
Match: A0A814ZM29_9BILA (Hypothetical protein n=1 Tax=Didymodactylos carnosus TaxID=1234261 RepID=A0A814ZM29_9BILA)

HSP 1 Score: 148 bits (373), Expect = 4.660e-38
Identity = 65/154 (42.21%), Postives = 94/154 (61.04%), Query Frame = 3
Query:   72 CGHNHVSYESKEAAVLAGATVMHCGNCGKCSNRDDIDIYERTKDTLTYTTTRCAYAYLVLGRWAAAACMRRSVGFTDSCNECWLDNIECDMRECLWICLKHTLAGSANNLEGEELNACLACDEEQCGPVFIQCAGANRRRSGIISDIGRPNEQV 533
            CG + ++Y ++EAA   G   +H G CG CS+ +DI+I+  T++ +T  +T+CA  Y++ G+ +A  CM  +   +  C ECW++N+ CD  +CL +C    +    N      LN CLACDE  CG  FI CAGANRRRSGI SDI RP + +
Sbjct:  129 CGADGINYPTQEAACTNGTYALHGGYCGACSSHEDINIFNITRNNMTSISTKCAVKYVLFGKNSATKCMTNTAALSVECTECWVENMGCDAAQCLTLCAIDRILHVNNTKPDGSLNDCLACDEGYCGKPFIVCAGANRRRSGITSDIDRPQDTI 282          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig7299.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A061RHZ8_9CHLO4.160e-5652.27Uncharacterized protein n=1 Tax=Tetraselmis sp. GS... [more]
A0A7S1SVQ4_9CHLO1.730e-4750.00Hypothetical protein n=1 Tax=Tetraselmis chuii Tax... [more]
A0A7S4RSG6_9STRA1.580e-4448.75Hypothetical protein n=1 Tax=Ditylum brightwellii ... [more]
A0A6U1RQQ2_CYCTE3.210e-4351.35Hypothetical protein n=1 Tax=Cyclophora tenuis Tax... [more]
A0A1Z5JSM5_FISSO2.040e-4149.65Uncharacterized protein n=2 Tax=Fistulifera solari... [more]
A0A835YBJ5_9CHLO2.090e-4143.93Uncharacterized protein n=1 Tax=Edaphochlamys deba... [more]
A0A7S1D0G0_CYCTE1.900e-4047.06Hypothetical protein n=1 Tax=Cyclophora tenuis Tax... [more]
A0A813LMN6_POLGL4.460e-4045.86Hypothetical protein n=1 Tax=Polarella glacialis T... [more]
A0A835T1V2_CHLIN5.810e-4045.45Uncharacterized protein n=1 Tax=Chlamydomonas ince... [more]
A0A814ZM29_9BILA4.660e-3842.21Hypothetical protein n=1 Tax=Didymodactylos carnos... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig7299contigP-wetherbeei_contig7299:140..1341 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog5762.XP_002670524.1
Model size1202
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons1
Evalue6.37e-31
EggNOG OGs2E6I2@1|root,2SD7K@2759|Eukaryota
Cds size591
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186970.8255162-UTR-P-wetherbeei_contig7299:139..2731683186970.8255162-UTR-P-wetherbeei_contig7299:139..273Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig7299 140..273 +
1683186970.8429585-UTR-P-wetherbeei_contig7299:864..13411683186970.8429585-UTR-P-wetherbeei_contig7299:864..1341Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig7299 865..1341 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186970.834671-CDS-P-wetherbeei_contig7299:273..8641683186970.834671-CDS-P-wetherbeei_contig7299:273..864Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig7299 274..864 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig7299.1.1prot_P-wetherbeei_contig7299.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig7299 274..864 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig7299.1.1

>prot_P-wetherbeei_contig7299.1.1 ID=prot_P-wetherbeei_contig7299.1.1|Name=mRNA_P-wetherbeei_contig7299.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=197bp
MHCGNCGKCSNRDDIDIYERTKDTLTYTTTRCAYAYLVLGRWAAAACMRR
SVGFTDSCNECWLDNIECDMRECLWICLKHTLAGSANNLEGEELNACLAC
DEEQCGPVFIQCAGANRRRSGIISDIGRPNEQVCTDVDPWPAGGRDRAAG
RQRGGAGGLEAPRSPGVSAITGGGSDGGKGGGGGTCGGGGSHGSGL*
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mRNA from alignment at P-wetherbeei_contig7299:140..1341+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig7299.1.1 ID=mRNA_P-wetherbeei_contig7299.1.1|Name=mRNA_P-wetherbeei_contig7299.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1202bp|location=Sequence derived from alignment at P-wetherbeei_contig7299:140..1341+ (Phaeothamnion wetherbeei SAG_119_79)
TTCTCGTTGCCTCGACGTTGTTCCTCAGGGGGCTGAGACCAGCGGTGGCC GACATCGATGAAGGCCGCGTCTGCGGCCACAACCACGTCAGCTACGAGAG CAAGGAAGCTGCGGTGCTGGCAGGCGCCACGGTGATGCACTGCGGAAACT GCGGAAAGTGCTCGAACCGCGACGACATTGACATCTACGAACGGACAAAG GACACGCTCACGTACACGACGACGCGATGCGCCTACGCCTACCTCGTGCT CGGCCGCTGGGCCGCGGCGGCCTGCATGCGGCGCTCCGTCGGTTTCACAG ACAGCTGCAACGAGTGCTGGCTCGACAACATCGAGTGCGACATGCGCGAG TGCCTCTGGATCTGCCTCAAGCACACGCTCGCGGGGAGCGCCAACAACCT CGAGGGCGAGGAGCTGAACGCCTGCCTGGCGTGCGACGAGGAGCAGTGCG GCCCAGTGTTCATCCAGTGCGCCGGCGCAAACCGCCGCCGCTCCGGCATC ATCAGCGACATCGGCCGCCCCAACGAGCAGGTCTGTACGGATGTCGACCC GTGGCCAGCGGGCGGCCGTGACCGCGCCGCAGGTCGCCAGCGCGGCGGCG CCGGCGGCTTGGAGGCGCCGCGGTCGCCGGGCGTCAGCGCTATCACCGGC GGGGGCAGCGACGGCGGCAAAGGCGGCGGCGGCGGGACGTGCGGGGGCGG CGGATCTCACGGTTCCGGGCTTTAGACTTGACCCGCGCACTTCCGCCGTT AGAGCAGTTCCTCCCACCGCCACAGCCGGCATCAACGCCTTCTCGAAGGG GACGGCAGGTGCCCTTGCCTGTTTATGGAACGTGGTTTTCCTCGGGCTCC AGAGAACATGGGCAGGAGAGATTGAAGGCCGCTCTTCGGCCCTTCGCTTC CTGATGTCTGTCTGTTTGGGACCGACGTCAGCAGCAAGCAGAATAAAGGG CGTTTTCTGGCACCGGTATGGCCGTCCGGGGCCGCCGCTATGAGCGGCGT CCGAAATCGGGCGGTTTTCTGGTCCGGCGGAGCAGCGACAAAGGCGCTTT TGGTCGGCTTTACGGCGAACGGCGGCGCCGGCGGCCGTGGCGGTGGGGGA GTAGTGTATATTTTTCCCCATGCCCGCCGCCACATTGGCCGCATCGGCAG TAAGCCGTTGATCGGTTTTTGGACAGTATGATGAATACAGTTTCGTTTTG GG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig7299:140..1341+

>mRNA_P-wetherbeei_contig7299.1.1 ID=mRNA_P-wetherbeei_contig7299.1.1|Name=mRNA_P-wetherbeei_contig7299.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=591bp|location=Sequence derived from alignment at P-wetherbeei_contig7299:140..1341+ (Phaeothamnion wetherbeei SAG_119_79)
ATGCACTGCGGAAACTGCGGAAAGTGCTCGAACCGCGACGACATTGACAT
CTACGAACGGACAAAGGACACGCTCACGTACACGACGACGCGATGCGCCT
ACGCCTACCTCGTGCTCGGCCGCTGGGCCGCGGCGGCCTGCATGCGGCGC
TCCGTCGGTTTCACAGACAGCTGCAACGAGTGCTGGCTCGACAACATCGA
GTGCGACATGCGCGAGTGCCTCTGGATCTGCCTCAAGCACACGCTCGCGG
GGAGCGCCAACAACCTCGAGGGCGAGGAGCTGAACGCCTGCCTGGCGTGC
GACGAGGAGCAGTGCGGCCCAGTGTTCATCCAGTGCGCCGGCGCAAACCG
CCGCCGCTCCGGCATCATCAGCGACATCGGCCGCCCCAACGAGCAGGTCT
GTACGGATGTCGACCCGTGGCCAGCGGGCGGCCGTGACCGCGCCGCAGGT
CGCCAGCGCGGCGGCGCCGGCGGCTTGGAGGCGCCGCGGTCGCCGGGCGT
CAGCGCTATCACCGGCGGGGGCAGCGACGGCGGCAAAGGCGGCGGCGGCG
GGACGTGCGGGGGCGGCGGATCTCACGGTTCCGGGCTTTAG
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