mRNA_P-wetherbeei_contig7293.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig7293.1.1
Unique NamemRNA_P-wetherbeei_contig7293.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig7293.1.1 vs. uniprot
Match: D8LNP3_ECTSI (ARL2_Bind_BART domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LNP3_ECTSI)

HSP 1 Score: 77.8 bits (190), Expect = 2.120e-16
Identity = 36/59 (61.02%), Postives = 47/59 (79.66%), Query Frame = 1 
Query:    1 REGSDIHTFYAEVRRKQTSQDPNVKLFVQCLLASADYDSFFNVMRKEAQRQLEQQQHAG 177
            REGS I+ FY  +R  QT+ DP V+LF+ CLLASADYDSFFNVM+KEA++ L +++H G
Sbjct:   87 REGSTINEFYNVIRDHQTNPDPQVQLFINCLLASADYDSFFNVMKKEAEKSLRKKRHLG 145
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BLAST of mRNA_P-wetherbeei_contig7293.1.1 vs. uniprot
Match: A0A835ZDD4_9STRA (ARL2_Bind_BART domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZDD4_9STRA)

HSP 1 Score: 72.8 bits (177), Expect = 1.450e-14
Identity = 34/55 (61.82%), Postives = 45/55 (81.82%), Query Frame = 1 
Query:    1 REGSDIHTFYAEVRRKQTSQDPNVKLFVQCLLASADYDSFFNVMRKEAQRQLEQQ 165
            REG+    FYA +R  Q+S DP+++LF++CLLASADYDSFFNVM KE++RQL+ Q
Sbjct:   82 REGATQEQFYAAIRDAQSSTDPSIQLFIRCLLASADYDSFFNVMVKESRRQLDAQ 136
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BLAST of mRNA_P-wetherbeei_contig7293.1.1 vs. uniprot
Match: A0A482S9M1_9ARCH (Uncharacterized protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482S9M1_9ARCH)

HSP 1 Score: 47.4 bits (111), Expect = 2.440e-5
Identity = 26/46 (56.52%), Postives = 29/46 (63.04%), Query Frame = 1 
Query:   16 IHTFYAEVRRKQ-TSQDPNVKLFVQCLLASADYDSFFNVMRKEAQR 150
            I  FY EVR  Q  + D  V  FV CLLASADY+SF+ VM KE  R
Sbjct:    3 IAEFYQEVRDAQHETHDLYVSTFVDCLLASADYESFYKVMAKEGHR 48
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig7293.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D8LNP3_ECTSI2.120e-1661.02ARL2_Bind_BART domain-containing protein n=2 Tax=E... [more]
A0A835ZDD4_9STRA1.450e-1461.82ARL2_Bind_BART domain-containing protein n=1 Tax=T... [more]
A0A482S9M1_9ARCH2.440e-556.52Uncharacterized protein n=1 Tax=archaeon TaxID=190... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig7293contigP-wetherbeei_contig7293:138..314 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D8LNP3
PFAMsARL2_Bind_BART
Model size177
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons1
Evalue3.47e-17
EggNOG OGs2C07X@1|root,2S28G@2759|Eukaryota
Ec32 ortholog descriptionADP-ribosylation factor-like 2-binding protein, domain
Ec32 orthologEc-08_006370.1
DescriptionThe ARF-like 2 binding protein BART
Cds size177
COG categoryS
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186970.6380029-CDS-P-wetherbeei_contig7293:137..3141683186970.6380029-CDS-P-wetherbeei_contig7293:137..314Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig7293 138..314 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig7293.1.1prot_P-wetherbeei_contig7293.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig7293 138..314 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig7293.1.1

>prot_P-wetherbeei_contig7293.1.1 ID=prot_P-wetherbeei_contig7293.1.1|Name=mRNA_P-wetherbeei_contig7293.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=59bp
REGSDIHTFYAEVRRKQTSQDPNVKLFVQCLLASADYDSFFNVMRKEAQR
QLEQQQHAG
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mRNA from alignment at P-wetherbeei_contig7293:138..314+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig7293.1.1 ID=mRNA_P-wetherbeei_contig7293.1.1|Name=mRNA_P-wetherbeei_contig7293.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=177bp|location=Sequence derived from alignment at P-wetherbeei_contig7293:138..314+ (Phaeothamnion wetherbeei SAG_119_79)
AGGGAGGGGAGCGACATCCACACCTTCTACGCCGAGGTGCGGCGGAAGCA
AACGAGTCAGGACCCCAACGTGAAGCTCTTTGTGCAGTGCCTGCTTGCCT
CAGCTGACTACGACTCCTTCTTCAACGTCATGCGCAAGGAAGCCCAGCGC
CAGCTCGAGCAGCAGCAGCACGCTGGG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig7293:138..314+

>mRNA_P-wetherbeei_contig7293.1.1 ID=mRNA_P-wetherbeei_contig7293.1.1|Name=mRNA_P-wetherbeei_contig7293.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=177bp|location=Sequence derived from alignment at P-wetherbeei_contig7293:138..314+ (Phaeothamnion wetherbeei SAG_119_79)
AGGGAGGGGAGCGACATCCACACCTTCTACGCCGAGGTGCGGCGGAAGCA
AACGAGTCAGGACCCCAACGTGAAGCTCTTTGTGCAGTGCCTGCTTGCCT
CAGCTGACTACGACTCCTTCTTCAACGTCATGCGCAAGGAAGCCCAGCGC
CAGCTCGAGCAGCAGCAGCACGCTGGG
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