mRNA_P-wetherbeei_contig7281.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig7281.1.1
Unique NamemRNA_P-wetherbeei_contig7281.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig7281.1.1 vs. uniprot
Match: A0A5J4Z2P4_PORPP (tRNA (Guanine(10)-N2)-methyltransferase-like n=1 Tax=Porphyridium purpureum TaxID=35688 RepID=A0A5J4Z2P4_PORPP)

HSP 1 Score: 134 bits (338), Expect = 6.330e-32
Identity = 109/284 (38.38%), Postives = 137/284 (48.24%), Query Frame = 1
Query:    1 RQLALGPAVGGQGVMST--TARRPRAGWLRRYALSSRPFLAATAMEPELAFLMANLARPXXXXXXXXXXXVLDPFCGSASILLAAARLGASATIGSDVDADALDFDGVCANFAVAGLSPPPRLFVADVT--AEASPLM------ELRVDAIVTDPPYEMRAKSRLDGLNRNHQRGGGENSTEDGGTGDRGFSSRDAEFDAVTAADHAVDTVVLRLLRLASRVLNPGGRLVFFWPDSNVAIDHAAGDDKSVPWRGRLPDSFRLVCAGEQRFSPTFSRWLVVLEKV 822
            R L  GPA G Q V+     +RR R+G L + AL  RPF A T MEPELA LMA+LA             VLDPFCGS S+LLAA+  GA   +G DV+    +  GV ANF   GL  P  L+ A+V    + SP          R + I++DPPY MRA  ++                 D    D G  S D   ++      A  T   RL  +A  +L+ GGRLV F PD   ++   A D         L D  RL+    Q FSPTF RWLVV+EK+
Sbjct:  804 RLLCRGPAAGHQDVLGLGHRSRRARSGILAKLALKDRPFCAPTTMEPELALLMASLA------LASPGKTVLDPFCGSCSLLLAASVQGAEYVVGVDVECGTSNVQGVVANFEQLGLRAP-LLYEANVLDGRDRSPCFAAWAEPNTRYNCIISDPPYGMRAGVQV----------------HDQDVNDDGPVSND---ESPLYYQGAAGTATRRLCEIARDLLSVGGRLVCFVPDWRTSLYEFAPDVV-------LHDGLRLIACYPQVFSPTFRRWLVVIEKM 1054          
BLAST of mRNA_P-wetherbeei_contig7281.1.1 vs. uniprot
Match: A0A7S2JLU4_9EUKA (Hypothetical protein n=1 Tax=Haptolina brevifila TaxID=156173 RepID=A0A7S2JLU4_9EUKA)

HSP 1 Score: 114 bits (286), Expect = 1.090e-26
Identity = 101/296 (34.12%), Postives = 135/296 (45.61%), Query Frame = 1
Query:    4 QLALGPAVGGQGVMSTTARRPRAGWLRRYALSSRPFLAATAMEPELAFLMANLARPXXXXXXXXXXXVLDPFCGSASILLAAARLGASATIGSDVDADALDFDGVCANFAVAGLSPPPRLFVADVTAEA-SPLM--ELRVDAIVTDPPYEMRAKSRLDGLNRNHQRGGGENSTEDGGTGDRGFSSRDAEFDAVTAADHAVDTVVLRLLRLASRVLNPGGRLVFFWPDSNVAIDHAAGD--DKSVPWRGRLPDSFRLVCAGEQRFSP-------------------TFSRWLVVLEK 819
            ++A GPA G         RR   GWL +YAL  R   AATAMEPE+AFLMAN AR            VLDP CGS  +LL+AA LGA+  +G D++  A  F+GV A+F+   L P P+L   DV A   +P +  +   DAIV DPPY ++A   + G                            A+   + AAD     +   +L LA+R L PGGRLV F P     +     +   + +P     P + R+V    QRFS                     F+RWL+ LE+
Sbjct:   31 RVASGPAAGPGAPGVAQGRRCYTGWLGQYALKQRRHAAATAMEPEIAFLMANWAR------ISAASRVLDPTCGSCGLLLSAAVLGATQLVGIDMNRSA--FEGVAADFSRMAL-PAPKLVCGDVLAPRHTPELASDALYDAIVCDPPYNLQAPVFVQGS---------------------------AQTGPLAAAD-----LTSAVLGLAARALTPGGRLVLFVPARGAEVSLTLEELLARRMPPAAHRP-ALRIVYGRLQRFSTRRSRRAGSSATPRASRGPGAFARWLICLER 284          
BLAST of mRNA_P-wetherbeei_contig7281.1.1 vs. uniprot
Match: D7G924_ECTSI (UPF0020 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G924_ECTSI)

HSP 1 Score: 114 bits (284), Expect = 5.200e-25
Identity = 116/322 (36.02%), Postives = 145/322 (45.03%), Query Frame = 1
Query:    1 RQLALGPAVGGQGVMSTTA--RRPRAGWLRRYALSSRPFLAATAMEPELAFLMANLARPXXXXXXXXXXXVLDPFCGSASILLAAARLGASATIGSDVD-------------------------ADALDFDGVCANFAVAGLSPPPRLFVADVTAEASPLMELRV-DAIVTDPPYEMRAKSRLDGL----NRNHQRGG------GENST-----EDGGTGDRGFSSRDAEFDAVTAADHAVDTVVLRLLRLASRVLNPGGRLVFFWP--DSNVAIDHAAGDDKSVPWRGRL---PDSFRLVCAGEQRF-SPTFSRWLVVLEK 819
            R+L LG AVG  G +  T   RRP  G L   AL+ R     TA+EPE+A +MANLA+            VLDPFCGS S+LL AA +GA  T GSDV                          AD  DF+ +  +F   G++ P  L  ADV  E SP+      DAIVTDPPY ++AK     L    +  H+  G      G +ST     E G     G  +R     A  +A   V  V+  LL LA   L PGGRL FF P   +   +D           +G L   P    +V   +QR  SP   RWL+VLEK
Sbjct:  220 RELQLGAAVGVGGTVMATGCGRRPTRGVLGALALNRRRCRGPTAIEPEVALIMANLAK------VRPGSRVLDPFCGSCSLLLPAAHMGAK-TWGSDVSGPATASEEAGALVGGDTGAEGGVRQADREDFEQIYQDFQALGVAAP-TLVAADVGDEESPVRRPEFYDAIVTDPPYNIKAKVVTTSLATKTSGRHEEAGSVLPAAGIDSTAHAASEAGSEWKAGGGAR-----AEASAKDLVGKVIWSLLALARSSLKPGGRLCFFLPLRGAEARLDRLPTGLLEKMSQGDLAGDPARLAVVYTTKQRMTSPNMCRWLIVLEK 528          
BLAST of mRNA_P-wetherbeei_contig7281.1.1 vs. uniprot
Match: W7TUM5_9STRA (Trna guanosine-2-o-methyltransferase trm11 n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TUM5_9STRA)

HSP 1 Score: 108 bits (270), Expect = 3.740e-23
Identity = 93/295 (31.53%), Postives = 134/295 (45.42%), Query Frame = 1
Query:    4 QLALGPAVGGQGVMSTTARRPRAGWLRRYAL--SSRPFLAATAMEPELAFLMANLARPXXXXXXXXXXXVLDPFCGSASILLAAARLGASATIGSDVDADALDFDG------VCANFA---------VAGL-SPPPRLFVADVTA-EASPLMELRV-DAIVTDPPYEMRAKSRLDGLNRNHQRGGGENSTEDGGTGDRGFSSRDAEFDAVTAADHAVDTVVLRLLRLASRVLNPGGRLVFF---WPDSNVAIDHAAGDDKSVPWRGRLPDSFRLVCAGEQRFSPTFSRWLVVLEK 819
            +LA GP  G     ++  RRPR+G L+  A       F++ TAM+PELA++M N+              V DPF GS S+L  A+ LGA    GSD   + +  +       +  +FA         V  L SP P L  AD+ + +  PL      D+IVTDPPY ++AK                           G +    +  A TA    +  V+  L+ +A+ VL PGGRLVFF   W   ++  +  +  +       R P +F++V    Q FSP+F+RWLV LEK
Sbjct:  255 RLAQGPGTGKGYTFASKPRRPRSGVLKALAAYREKATFISPTAMDPELAWVMNNMG------GVRKRSRVFDPFMGSGSLLFTASLLGAEELFGSDAAQELMGGESRVNKQLIIKSFAYDKNDFSQWVDSLTSPVPVLTQADILSRQLHPLFRSGYYDSIVTDPPYNIKAKVF-------------------------GKAETATDTKAATARQQTIIPVIFALIDIAASVLVPGGRLVFFLPEWTKQDIGCNKKSDANILSYMLSRTPKAFKVVFTLPQTFSPSFTRWLVCLEK 518          
BLAST of mRNA_P-wetherbeei_contig7281.1.1 vs. uniprot
Match: K0R723_THAOC (Uncharacterized protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0R723_THAOC)

HSP 1 Score: 104 bits (260), Expect = 8.980e-22
Identity = 101/293 (34.47%), Postives = 138/293 (47.10%), Query Frame = 1
Query:    1 RQLALGPAVGGQGVMSTTARRPRAGWLRRYALSSRPFLAA---------TAMEPELAFLMANLARPXXXXXXXXXXXVLDPFCGSASILLAAARLGASATIGSDVDADALDFDGVCANFAVAGLSPPP-RLFVADVTAEASPLMELR----VDAIVTDPPYEMRAKSRLDGLNR---NHQRGGGENSTEDGGTGDRGFSSRDAEFDAVTAADHAVDTVVLRLLRLASRVLNPGGRLVFFWPDSNVAIDHAAGDDKSVPWRGRLPDSFRLV---CAGEQRFSPTFSRWLVVLEK 819
            R+ A+G A G +G  S   RR   G L+R+AL  R  + A         TAMEPE+AFLMA+LA             +LDP CGS S+LL+AA LGA+  IG D+D+   D +    +  V G  P    LFV    +  +    L     +D +V DPPY + A   + G +R   NH             +G +   SR  +   V  AD   D V   +  +A RVL  GGRLV F P        +  +   +     + DS  ++   C+  QRFSPTFSRWL+ +EK
Sbjct:  259 RRTAIGLA-GNKGAPSRALRRTNRGVLKRFALKERQAIVASKKERSNISTAMEPEIAFLMASLALDGLRANGGSTT-ILDPCCGSGSLLLSAAALGATHLIGVDLDSAVWDENEFRRHQTVFGSRPLAIPLFVCGDVSNPTRTRVLSESDSIDCVVCDPPYNIGAPVIIKGKDRRPVNHHM-----------SGQQIVGSR-KDSQVVERADLVPDLVPY-IFDVAQRVLVKGGRLVMFVPARGYEATLSLEELVHLKLGNGVFDSNLVLLNDCSRLQRFSPTFSRWLMCMEK 536          
BLAST of mRNA_P-wetherbeei_contig7281.1.1 vs. uniprot
Match: A0A0D6R2X9_ARACU (UPF0020 domain-containing protein n=1 Tax=Araucaria cunninghamii TaxID=56994 RepID=A0A0D6R2X9_ARACU)

HSP 1 Score: 98.2 bits (243), Expect = 1.370e-19
Identity = 94/257 (36.58%), Postives = 124/257 (48.25%), Query Frame = 1
Query:   79 LRRYALSSRPFLAATAMEPELAFLMANLARPXXXXXXXXXXXVLDPFCGSASILLAAARLGASATIGSDVDADALDFDG------VCANFAVAGLSPPPRLFVAD--VTAEASPLMELRVDAIVTDPPYEMRAKSRLDGLNRNHQRGGGENSTEDGGTGDRGFSSRDAEFDAVTAADHAVDTVVLRLLRLASRVLNPGGRLVFFWPDSNVAIDHAAGDDKSVPWRGRLPDS--FRLVCAGEQRFSPTFSRWLVVLEK 819
            L  YALS R +L  TAM+ E+AFLMAN A             V DPF G+ SIL+AAA  GA  T+G+D+D   +  DG      V +NF   GL PP  L  AD  +      L E+  DAI+ DPPY +RA  R  G  +  +          G  G              + A ++++  V  LL +A+R+L  GGRLVFF+P   +A+D  A D          PD   F LV   EQ  S  +SR L+ +EK
Sbjct:  182 LPTYALSKRKYLGPTAMDAEIAFLMANQA------LVQPGKLVYDPFVGTGSILVAAAHFGAM-TMGTDIDIRVVR-DGRGPDCNVWSNFKQYGLPPPISLIRADNNLPPWRGDLQEV-CDAIICDPPYGVRAGGRKSGGRKLLK----------GLIGPYVIPDEKRRDHIPSTAFYSLEECVHDLLDMAARLLVMGGRLVFFYP---LAVDEDAKDI--------FPDHKCFTLVSHSEQILSTRYSRCLLTMEK 408          
BLAST of mRNA_P-wetherbeei_contig7281.1.1 vs. uniprot
Match: A0A7S2SDE9_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SDE9_9STRA)

HSP 1 Score: 96.3 bits (238), Expect = 1.500e-19
Identity = 80/216 (37.04%), Postives = 104/216 (48.15%), Query Frame = 1
Query:   37 GVMSTTARRPRAGWLRRYALSSRPFLAATAMEPELAFLMANLARPXXXXXXXXXXXVLDPFCGSASILLAAARLGASATIGSDVDADALDF--DGVCANFAVAGLSPPPRLFVADVTAE--ASPLMELRVDAIVTDPPYEMRAKSRLDGLNRNHQRGGGENSTEDGGTGDRGFSSRDAEFDAVTAADHAVDTVVLRLLRLASRVLNPGGRLVFFWP 672
            G+ S   RRPRAG L ++AL  R    AT MEPELAF+MAN+              VLDPFCG+A +LL A  LGA+  +G D + + L+     V  + A+ GL   P L    ++    A P  EL  D ++TDPPY + A+   DG  R       EN  +D       F+       A  A       +   L+ LA   L PGGRLVFF P
Sbjct:    1 GIFSVAPRRPRAGVLLKFALHRRRARVATTMEPELAFMMANMG------GVQAGSRVLDPFCGAAGLLLPALHLGAARAVGLDANRETLETLAPEVERDCAMLGLQGRPDLLCTPISGAGLALPGDEL-FDVVLTDPPYGIGARIE-DGAAR-QDTAAAENDVQDPRNATSDFAL------APEARGKGAAALCAELVELAEARLRPGGRLVFFLP 201          
BLAST of mRNA_P-wetherbeei_contig7281.1.1 vs. uniprot
Match: UPI0010A40AB3 (tRNA (guanine(10)-N2)-methyltransferase homolog isoform X1 n=3 Tax=Prosopis alba TaxID=207710 RepID=UPI0010A40AB3)

HSP 1 Score: 96.3 bits (238), Expect = 6.620e-19
Identity = 90/256 (35.16%), Postives = 123/256 (48.05%), Query Frame = 1
Query:   88 YALSSRPFLAATAMEPELAFLMAN--LARPXXXXXXXXXXXVLDPFCGSASILLAAARLGASATIGSDVDADALDFDG------VCANFAVAGLSPPPRLFVADVTAEA-SPLMELRVDAIVTDPPYEMRAKSRLDGLNRNHQRGGGENSTEDGGTGDRGFSSRDAEFDAV-TAADHAVDTVVLRLLRLASRVLNPGGRLVFFWPDSNVAIDHAAGDDKSVPWRGRLPDSFRLVCAGEQRFSPTFSRWLVVLEKVG 825
            Y L SR +L  TAM+ E+AFLMAN  LA P           + DPF G+ SIL+AAA  GA  T+G+D+D   +  DG      V +NF   GL  P  L  AD    +  P ++   DAI+ DPPY +RA  R  G  +  +           G  +      D   D + + A +++   V  LL LA+R+L PGGRLVFF+P           +D S          FRL+ + EQ  S  +SR L+ + K G
Sbjct:  198 YQLKSRTYLGPTAMDAEMAFLMANQALATPGKL--------IYDPFVGTGSILVAAAHFGAM-TMGADIDIRVVR-DGRGPDCNVWSNFKQYGLPMPIGLLRADNNLPSWRPGLKEVFDAIICDPPYGVRAGGRKSGGRKLLK-----------GVVEPYIVPDDKRTDHIPSTASYSLVECVHDLLDLAARMLVPGGRLVFFYP--------VLREDDSAETHFPEHPCFRLISSSEQILSSRYSRVLLTMVKTG 424          
BLAST of mRNA_P-wetherbeei_contig7281.1.1 vs. uniprot
Match: A0A660KQJ4_9ROSI (UPF0020 domain-containing protein n=1 Tax=Carpinus fangiana TaxID=176857 RepID=A0A660KQJ4_9ROSI)

HSP 1 Score: 95.9 bits (237), Expect = 8.680e-19
Identity = 91/258 (35.27%), Postives = 122/258 (47.29%), Query Frame = 1
Query:   79 LRRYALSSRPFLAATAMEPELAFLMAN--LARPXXXXXXXXXXXVLDPFCGSASILLAAARLGASATIGSDVDADALDFDG------VCANFAVAGLSPPPRLFVADVTAEA-SPLMELRVDAIVTDPPYEMRAKSRLDGLNRNHQRGGGENSTEDGGTGDRGFSSRDAEFDAV-TAADHAVDTVVLRLLRLASRVLNPGGRLVFFWPDSNVAIDHAAGDDKSVPWRGRLPDSFRLVCAGEQRFSPTFSRWLVVLEKV 822
            L  Y L SR +L  TAM+ E+AFLMAN  LA P           V DPF G+ SIL+AAA  GA  T+G+D+D   +  DG      V +NF   GL  P  L  AD       P ++   DAI+ DPPY +RA  R  G  +  +           GT D      D   D + + A + +   V  LL LA+++L  GGRLVFF+P           DD +V         F+L+   EQ  S  +SR L+ + K+
Sbjct:  185 LPTYQLKSRTYLGPTAMDAEMAFLMANQALATPGKL--------VYDPFVGTGSILIAAAHFGAM-TMGADIDIRVVR-DGRGPDCNVWSNFKQYGLPMPIALLRADNNLPPWRPGLKEVFDAIICDPPYGVRAGGRKSGGRKLLK-----------GTVDPYTVPDDKRTDHIPSTASYCLAECVHDLLDLAAKMLRMGGRLVFFYP--------VLRDDDNVETHFPEHPCFKLIATSEQILSSRYSRVLLTMVKI 413          
BLAST of mRNA_P-wetherbeei_contig7281.1.1 vs. uniprot
Match: A0A2I4FN97_JUGRE (tRNA (Guanine(10)-N2)-methyltransferase homolog n=5 Tax=Juglandaceae TaxID=16714 RepID=A0A2I4FN97_JUGRE)

HSP 1 Score: 95.9 bits (237), Expect = 8.940e-19
Identity = 93/259 (35.91%), Postives = 126/259 (48.65%), Query Frame = 1
Query:   79 LRRYALSSRPFLAATAMEPELAFLMAN--LARPXXXXXXXXXXXVLDPFCGSASILLAAARLGASATIGSDVDADALDFDG------VCANFAVAGLSPPPRLFVADVTAEA-SPLMELRVDAIVTDPPYEMRAKSRLDGLNRNHQRGGGENSTEDGGTGDRGFSSRDAEFDAV-TAADHAVDTVVLRLLRLASRVLNPGGRLVFFWPDSNVAIDHAAGDDKSVPWRGRLPDSFRLVCAGEQRFSPTFSRWLVVLEKVG 825
            L  Y L SR +L  TAM+ E+AFLMAN  LA P           V DPF G+ SIL+AAA  GA  T+G+D+D   +  DG      V +NF   GL  P  L  AD       P ++   DAI+ DPPY +RA  R  G  +  +           GT D      D   D + + A +++   V  LL LA+R++  GGRLVFF+P   V  +    +D   P        F+L+ A EQ  S  +SR L+ + K+G
Sbjct:  192 LPTYQLKSRTYLGPTAMDAEIAFLMANQALATPGKL--------VYDPFVGTGSILIAAAHFGAM-TMGADIDIRVVR-DGRGPDCNVWSNFKQYGLPMPIALLRADNNLPPWRPGLKEIFDAIICDPPYGVRAGGRKSGGRKLLK-----------GTVDPYTVPDDKRTDHIPSTAAYSLVECVHDLLDLAARMIVMGGRLVFFYP---VLREDDYVEDHHYPEH----PCFKLIAASEQILSSRYSRVLLTMVKIG 422          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig7281.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A5J4Z2P4_PORPP6.330e-3238.38tRNA (Guanine(10)-N2)-methyltransferase-like n=1 T... [more]
A0A7S2JLU4_9EUKA1.090e-2634.12Hypothetical protein n=1 Tax=Haptolina brevifila T... [more]
D7G924_ECTSI5.200e-2536.02UPF0020 domain-containing protein n=1 Tax=Ectocarp... [more]
W7TUM5_9STRA3.740e-2331.53Trna guanosine-2-o-methyltransferase trm11 n=1 Tax... [more]
K0R723_THAOC8.980e-2234.47Uncharacterized protein n=1 Tax=Thalassiosira ocea... [more]
A0A0D6R2X9_ARACU1.370e-1936.58UPF0020 domain-containing protein n=1 Tax=Araucari... [more]
A0A7S2SDE9_9STRA1.500e-1937.04Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
UPI0010A40AB36.620e-1935.16tRNA (guanine(10)-N2)-methyltransferase homolog is... [more]
A0A660KQJ4_9ROSI8.680e-1935.27UPF0020 domain-containing protein n=1 Tax=Carpinus... [more]
A0A2I4FN97_JUGRE8.940e-1935.91tRNA (Guanine(10)-N2)-methyltransferase homolog n=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig7281contigP-wetherbeei_contig7281:1456..2511 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog2880.D7G924
PFAMsAnk_2,UPF0020
Model size828
Max annot lvl2759|Eukaryota
KEGG koko:K03178
KEGG Pathwayko04120,ko05012,map04120,map05012
Hectar predicted targeting categorymitochondrion
Exons4
Evalue8.52e-26
EggNOG OGsCOG1041@1|root,KOG2671@2759|Eukaryota
Ec32 ortholog descriptionRNA methylase
Ec32 orthologEc-15_002170.1
EC6.2.1.45
DescriptiontRNA binding
Cds size828
COG categoryL
BRITEko00000,ko00001,ko01000,ko04121,ko04147
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186970.0374885-CDS-P-wetherbeei_contig7281:1455..16231683186970.0374885-CDS-P-wetherbeei_contig7281:1455..1623Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig7281 1456..1623 +
1683186970.052615-CDS-P-wetherbeei_contig7281:1666..16771683186970.052615-CDS-P-wetherbeei_contig7281:1666..1677Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig7281 1667..1677 +
1683186970.073538-CDS-P-wetherbeei_contig7281:1763..22561683186970.073538-CDS-P-wetherbeei_contig7281:1763..2256Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig7281 1764..2256 +
1683186970.0862944-CDS-P-wetherbeei_contig7281:2355..25111683186970.0862944-CDS-P-wetherbeei_contig7281:2355..2511Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig7281 2356..2511 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig7281.1.1prot_P-wetherbeei_contig7281.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig7281 1456..2511 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig7281.1.1

>prot_P-wetherbeei_contig7281.1.1 ID=prot_P-wetherbeei_contig7281.1.1|Name=mRNA_P-wetherbeei_contig7281.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=276bp
RQLALGPAVGGQGVMSTTARRPRAGWLRRYALSSRPFLAATAMEPELAFL
MANLARPPPPPATTTTTTVLDPFCGSASILLAAARLGASATIGSDVDADA
LDFDGVCANFAVAGLSPPPRLFVADVTAEASPLMELRVDAIVTDPPYEMR
AKSRLDGLNRNHQRGGGENSTEDGGTGDRGFSSRDAEFDAVTAADHAVDT
VVLRLLRLASRVLNPGGRLVFFWPDSNVAIDHAAGDDKSVPWRGRLPDSF
RLVCAGEQRFSPTFSRWLVVLEKVG*
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mRNA from alignment at P-wetherbeei_contig7281:1456..2511+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig7281.1.1 ID=mRNA_P-wetherbeei_contig7281.1.1|Name=mRNA_P-wetherbeei_contig7281.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1056bp|location=Sequence derived from alignment at P-wetherbeei_contig7281:1456..2511+ (Phaeothamnion wetherbeei SAG_119_79)
CGCCAGCTCGCCCTGGGACCGGCCGTGGGGGGCCAGGGAGTCATGTCGAC GACGGCGCGGCGGCCGCGGGCCGGCTGGCTGCGCCGTTACGCTCTCAGCT CACGGCCCTTCCTGGCAGCGACGGCCATGGAGCCCGAGCTCGCTTTTTTG ATGGCCAATCTCGCCCGCGTAGGCCTGCCGACGACGCCTGGACGCGGCGG CGCCGCCACAGCCGCCGCCACCGTTCCCGCTGCCGTTCCCGCCGCCTGCA TTAAAGCTGCGGCTAACGTCGTAGCGGCTTCGTCTTCTTCTCTCACCTGC TCGTCAAGGCCTGCAACAACGACAACGACGACGGTGCTGGACCCCTTTTG TGGGTCGGCATCCATCCTGCTCGCCGCCGCCCGGCTCGGCGCTTCGGCGA CCATCGGTTCCGACGTGGACGCCGATGCCCTCGACTTCGACGGCGTCTGC GCCAACTTTGCCGTCGCCGGCCTCTCGCCACCGCCGCGGCTCTTCGTCGC CGACGTAACGGCGGAAGCGTCGCCTCTGATGGAGCTGCGTGTCGACGCGA TTGTGACCGACCCGCCGTACGAGATGCGCGCCAAAAGCCGGCTTGACGGA CTCAACCGTAACCATCAAAGAGGCGGTGGAGAGAACAGCACTGAGGATGG TGGCACCGGCGACCGAGGTTTCAGCAGCCGCGACGCAGAGTTCGACGCGG TTACTGCCGCTGATCACGCGGTGGACACTGTCGTCTTGCGTCTGCTGCGT CTGGCGTCGCGCGTGCTTAACCCGGGAGGGCGACTCGTCTTCTTTTGGCC GGTGCGGAAAGCAAGAATCGTCGGGAGCGGCGGCAGTGGCGGCGCAAGAA GTAGCGGCTGCGGCGATGGCGTGGGCGTCCGGGGCAGAAGCGTGGCGCAG GACAGTAACGTGGCAATTGACCACGCAGCCGGCGATGACAAGTCGGTTCC GTGGAGAGGACGCCTGCCGGACTCTTTTCGGCTTGTGTGTGCCGGCGAGC AACGCTTCTCCCCGACTTTCTCGCGGTGGCTTGTCGTTCTAGAAAAGGTC GGATAG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig7281:1456..2511+

>mRNA_P-wetherbeei_contig7281.1.1 ID=mRNA_P-wetherbeei_contig7281.1.1|Name=mRNA_P-wetherbeei_contig7281.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=828bp|location=Sequence derived from alignment at P-wetherbeei_contig7281:1456..2511+ (Phaeothamnion wetherbeei SAG_119_79)
CGCCAGCTCGCCCTGGGACCGGCCGTGGGGGGCCAGGGAGTCATGTCGAC
GACGGCGCGGCGGCCGCGGGCCGGCTGGCTGCGCCGTTACGCTCTCAGCT
CACGGCCCTTCCTGGCAGCGACGGCCATGGAGCCCGAGCTCGCTTTTTTG
ATGGCCAATCTCGCCCGCCCGCCGCCACCGCCTGCAACAACGACAACGAC
GACGGTGCTGGACCCCTTTTGTGGGTCGGCATCCATCCTGCTCGCCGCCG
CCCGGCTCGGCGCTTCGGCGACCATCGGTTCCGACGTGGACGCCGATGCC
CTCGACTTCGACGGCGTCTGCGCCAACTTTGCCGTCGCCGGCCTCTCGCC
ACCGCCGCGGCTCTTCGTCGCCGACGTAACGGCGGAAGCGTCGCCTCTGA
TGGAGCTGCGTGTCGACGCGATTGTGACCGACCCGCCGTACGAGATGCGC
GCCAAAAGCCGGCTTGACGGACTCAACCGTAACCATCAAAGAGGCGGTGG
AGAGAACAGCACTGAGGATGGTGGCACCGGCGACCGAGGTTTCAGCAGCC
GCGACGCAGAGTTCGACGCGGTTACTGCCGCTGATCACGCGGTGGACACT
GTCGTCTTGCGTCTGCTGCGTCTGGCGTCGCGCGTGCTTAACCCGGGAGG
GCGACTCGTCTTCTTTTGGCCGGACAGTAACGTGGCAATTGACCACGCAG
CCGGCGATGACAAGTCGGTTCCGTGGAGAGGACGCCTGCCGGACTCTTTT
CGGCTTGTGTGTGCCGGCGAGCAACGCTTCTCCCCGACTTTCTCGCGGTG
GCTTGTCGTTCTAGAAAAGGTCGGATAG
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