mRNA_P-wetherbeei_contig7279.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig7279.1.1
Unique NamemRNA_P-wetherbeei_contig7279.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig7279.1.1 vs. uniprot
Match: K8FCI6_9CHLO (Uncharacterized protein n=1 Tax=Bathycoccus prasinos TaxID=41875 RepID=K8FCI6_9CHLO)

HSP 1 Score: 61.6 bits (148), Expect = 9.200e-7
Identity = 31/75 (41.33%), Postives = 42/75 (56.00%), Query Frame = 2 
Query:  728 CQQAAEAGNLENLQFLRSTAGFPWDVRAPMAAARRGDLPLLQWCVANGCPCDAFTTSLAASAGHFELLQWAWEHA 952
            C Q A+   LE L++ R      WD      AARRG+L ++++CVAN CP D    + AA  GH ELL++  E A
Sbjct:  118 CYQVAKTNKLELLKWAREEKECEWDEWTINRAARRGNLEMVKYCVANECPIDVSACANAALGGHLELLKYLHEEA 192
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BLAST of mRNA_P-wetherbeei_contig7279.1.1 vs. uniprot
Match: K8F2E2_9CHLO (Uncharacterized protein n=1 Tax=Bathycoccus prasinos TaxID=41875 RepID=K8F2E2_9CHLO)

HSP 1 Score: 61.2 bits (147), Expect = 1.210e-6
Identity = 32/95 (33.68%), Postives = 51/95 (53.68%), Query Frame = 2 
Query:  704 WVSGATE--LCQQAAEAGNLENLQFLRSTAGFPWDVRAPMAAARRGDLPLLQWCVANGCPCDAFTTSLAASAGHFELLQ---------WAWEHAP 955
            W S  +E   C + A+   LE L++++      WD     AAA++G++ ++++CVA  CP + F  + AASAGH E+L+         W W  AP
Sbjct:  103 WPSNWSERDFCLEVAKTNKLELLKWIQEEKKCEWDSGTINAAAKQGNMEMVKYCVAKKCPINVFACANAASAGHLEVLKYLREEVKAPWDWRIAP 197
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig7279.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
K8FCI6_9CHLO9.200e-741.33Uncharacterized protein n=1 Tax=Bathycoccus prasin... [more]
K8F2E2_9CHLO1.210e-633.68Uncharacterized protein n=1 Tax=Bathycoccus prasin... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig7279contigP-wetherbeei_contig7279:45..1601 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D7FMP0
PFAMsAnk_2,Ank_4
Model size1557
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons1
Evalue1.1e-08
EggNOG OGs2AMK4@1|root,2RZCC@2759|Eukaryota
Cds size969
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186969.7761629-UTR-P-wetherbeei_contig7279:44..3841683186969.7761629-UTR-P-wetherbeei_contig7279:44..384Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig7279 45..384 +
1683186969.7981973-UTR-P-wetherbeei_contig7279:1353..16011683186969.7981973-UTR-P-wetherbeei_contig7279:1353..1601Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig7279 1354..1601 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186969.7866373-CDS-P-wetherbeei_contig7279:384..13531683186969.7866373-CDS-P-wetherbeei_contig7279:384..1353Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig7279 385..1353 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig7279.1.1prot_P-wetherbeei_contig7279.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig7279 385..1353 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig7279.1.1

>prot_P-wetherbeei_contig7279.1.1 ID=prot_P-wetherbeei_contig7279.1.1|Name=mRNA_P-wetherbeei_contig7279.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=323bp
MNREPKQNKTSMMENATSFVFAEPGLLGHVLSLAGRKEHIFFGSVARSWR
DSLRLDYLQRSMTPKTCIEAAVVSQSRLVWAMECGGLSWSKQVAKVAAKT
AGGIPALQYAIKAGRLSPGGDWVSGATELCQQAAEAGNLENLQFLRSTAG
FPWDVRAPMAAARRGDLPLLQWCVANGCPCDAFTTSLAASAGHFELLQWA
WEHAPNSRDTNLCRTAAAAGHLEILQWARTIGCEWGRTVAAAAEAGHVVI
LAWAMSNGCPFVGTEVCALAAYQGNLGALKFLRSNGCPWNADTCLFARMR
HQRAVLDWIHANGCPCWHGNHG*
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mRNA from alignment at P-wetherbeei_contig7279:45..1601+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig7279.1.1 ID=mRNA_P-wetherbeei_contig7279.1.1|Name=mRNA_P-wetherbeei_contig7279.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1557bp|location=Sequence derived from alignment at P-wetherbeei_contig7279:45..1601+ (Phaeothamnion wetherbeei SAG_119_79)
AGCTCTTCATGAAGAAAGCTTGCCAAAACGAGCGCCTTCTTGCAAGCAAA
AGAAAGAATTGGCGACGAATCGGATAAATGTAGGAAGGTGAGCGAGCGGA
TGCCCCCTTTCTCCGTTATACCAACAGCTTTTCAGGGAGGAATCCGAACC
CTGAGCGCACGTGCACGCAAAGAGCGTTGGCGACGATCACGCGTAAACCG
TTCTTACTACTGCAAGTCACTCTAGAGAAACCCTTATCGCGAGATGAATT
TGCCCTCTTTCTTAATGGATTCAAACTCTGTAGGCAGGCCTTCGACACGT
TAACGTTGCACAAATCAACAAAACTTCGGAAAGACCTCTCATGAACCGAG
AACCAAAACAGAATAAAACCAGCATGATGGAGAACGCCACCTCCTTCGTT
TTCGCCGAGCCGGGCCTCCTCGGCCACGTGCTCTCCCTCGCCGGCCGCAA
GGAGCATATCTTCTTCGGCAGCGTGGCTCGGAGCTGGAGGGACAGCCTTC
GTTTGGACTACCTCCAGCGATCGATGACTCCGAAGACCTGCATTGAAGCT
GCGGTCGTTTCGCAGAGCCGCCTTGTGTGGGCCATGGAGTGCGGCGGCCT
CAGCTGGTCCAAGCAGGTCGCAAAGGTGGCAGCGAAGACCGCCGGAGGCA
TTCCGGCTCTCCAATACGCAATCAAAGCCGGCAGACTCTCGCCGGGTGGA
GACTGGGTGTCCGGAGCGACGGAGCTCTGCCAGCAAGCCGCAGAAGCCGG
GAACCTCGAAAATCTCCAATTCTTACGATCCACCGCCGGCTTTCCGTGGG
ACGTTCGTGCACCAATGGCTGCTGCTCGCCGCGGCGATTTGCCACTTCTG
CAATGGTGCGTCGCCAATGGCTGCCCGTGTGACGCCTTTACGACTTCTTT
AGCAGCGTCGGCGGGCCATTTCGAGCTGCTCCAGTGGGCGTGGGAGCACG
CTCCGAACTCGCGAGACACGAATCTGTGCCGGACGGCGGCCGCGGCGGGC
CACTTAGAAATTCTTCAGTGGGCGCGGACCATCGGATGCGAATGGGGAAG
GACGGTTGCGGCGGCCGCGGAGGCCGGCCATGTCGTCATTTTGGCGTGGG
CAATGTCAAATGGTTGCCCATTCGTTGGCACAGAGGTGTGCGCGCTAGCG
GCGTACCAGGGAAACCTTGGAGCTCTCAAGTTTCTGCGGTCCAATGGCTG
CCCGTGGAACGCCGACACATGTTTGTTCGCGAGAATGCGCCACCAGCGAG
CCGTGCTCGACTGGATCCACGCCAACGGCTGCCCCTGCTGGCACGGCAAT
CACGGCTGAGATATTAATGAATTGGCGAGCGGTCGTCTCTTCGGGGGGGA
AATGCGGGATCTACGGCGCTGCCAACTTCGTCGGCGCGCACGGGCACCTG
GTTTCCTGGCAGACCACAATCGGCTCAACCTTTTTATGCGGCGGCAGGCG
GTGGCATAGTGCGTTCATCGGGTCTCCGTTTCGGTCGGCCGACCGCCGCG
ACGCTTCTGTCTGCAGCGCCGGCGGCCGTGCTGCCTGCCTGCCTCTGCTG
CTGCGGT
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Coding sequence (CDS) from alignment at P-wetherbeei_contig7279:45..1601+

>mRNA_P-wetherbeei_contig7279.1.1 ID=mRNA_P-wetherbeei_contig7279.1.1|Name=mRNA_P-wetherbeei_contig7279.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=969bp|location=Sequence derived from alignment at P-wetherbeei_contig7279:45..1601+ (Phaeothamnion wetherbeei SAG_119_79)
ATGAACCGAGAACCAAAACAGAATAAAACCAGCATGATGGAGAACGCCAC
CTCCTTCGTTTTCGCCGAGCCGGGCCTCCTCGGCCACGTGCTCTCCCTCG
CCGGCCGCAAGGAGCATATCTTCTTCGGCAGCGTGGCTCGGAGCTGGAGG
GACAGCCTTCGTTTGGACTACCTCCAGCGATCGATGACTCCGAAGACCTG
CATTGAAGCTGCGGTCGTTTCGCAGAGCCGCCTTGTGTGGGCCATGGAGT
GCGGCGGCCTCAGCTGGTCCAAGCAGGTCGCAAAGGTGGCAGCGAAGACC
GCCGGAGGCATTCCGGCTCTCCAATACGCAATCAAAGCCGGCAGACTCTC
GCCGGGTGGAGACTGGGTGTCCGGAGCGACGGAGCTCTGCCAGCAAGCCG
CAGAAGCCGGGAACCTCGAAAATCTCCAATTCTTACGATCCACCGCCGGC
TTTCCGTGGGACGTTCGTGCACCAATGGCTGCTGCTCGCCGCGGCGATTT
GCCACTTCTGCAATGGTGCGTCGCCAATGGCTGCCCGTGTGACGCCTTTA
CGACTTCTTTAGCAGCGTCGGCGGGCCATTTCGAGCTGCTCCAGTGGGCG
TGGGAGCACGCTCCGAACTCGCGAGACACGAATCTGTGCCGGACGGCGGC
CGCGGCGGGCCACTTAGAAATTCTTCAGTGGGCGCGGACCATCGGATGCG
AATGGGGAAGGACGGTTGCGGCGGCCGCGGAGGCCGGCCATGTCGTCATT
TTGGCGTGGGCAATGTCAAATGGTTGCCCATTCGTTGGCACAGAGGTGTG
CGCGCTAGCGGCGTACCAGGGAAACCTTGGAGCTCTCAAGTTTCTGCGGT
CCAATGGCTGCCCGTGGAACGCCGACACATGTTTGTTCGCGAGAATGCGC
CACCAGCGAGCCGTGCTCGACTGGATCCACGCCAACGGCTGCCCCTGCTG
GCACGGCAATCACGGCTGA
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