mRNA_P-wetherbeei_contig7278.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig7278.1.1
Unique NamemRNA_P-wetherbeei_contig7278.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig7278.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig7278contigP-wetherbeei_contig7278:2..1071 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog4555.Si009344m
PFAMsNup88
Model size1070
Max annot lvl35493|Streptophyta
KEGG koko:K14318
KEGG TC1.l.1
KEGG Pathwayko03013,map03013
KEGG ModuleM00427
Hectar predicted targeting categorysignal peptide
GOsGO:0000054,GO:0000055,GO:0000056,GO:0002376,GO:0003674,GO:0005215,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005635,GO:0005643,GO:0006403,GO:0006405,GO:0006406,GO:0006606,GO:0006611,GO:0006810,GO:0006886,GO:0006913,GO:0006950,GO:0006952,GO:0006955,GO:0008104,GO:0008150,GO:0008152,GO:0009605,GO:0009607,GO:0009627,GO:0009814,GO:0010467,GO:0012505,GO:0015031,GO:0015833,GO:0015931,GO:0017038,GO:0022613,GO:0031503,GO:0031967,GO:0031975,GO:0032991,GO:0033036,GO:0033365,GO:0033750,GO:0034504,GO:0034613,GO:0042254,GO:0042886,GO:0043170,GO:0043207,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044085,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0045087,GO:0045184,GO:0046907,GO:0050657,GO:0050658,GO:0050896,GO:0051028,GO:0051168,GO:0051169,GO:0051170,GO:0051179,GO:0051234,GO:0051236,GO:0051640,GO:0051641,GO:0051649,GO:0051656,GO:0051704,GO:0051707,GO:0070727,GO:0071166,GO:0071426,GO:0071427,GO:0071428,GO:0071702,GO:0071704,GO:0071705,GO:0071840,GO:0072594,GO:0098542
Exons1
Evalue0.000166
EggNOG OGsKOG4460@1|root,KOG4460@2759|Eukaryota,37MVC@33090|Viridiplantae,3GFG1@35493|Streptophyta,3KQD3@4447|Liliopsida,3I4SC@38820|Poales
DescriptionNuclear pore component
Cds size1062
COG categoryUY
BRITEko00000,ko00001,ko00002,ko03019
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186969.7310402-UTR-P-wetherbeei_contig7278:1..91683186969.7310402-UTR-P-wetherbeei_contig7278:1..9Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig7278 2..9 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186969.7421956-CDS-P-wetherbeei_contig7278:9..10711683186969.7421956-CDS-P-wetherbeei_contig7278:9..1071Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig7278 10..1071 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig7278.1.1prot_P-wetherbeei_contig7278.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig7278 10..1071 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig7278.1.1

>prot_P-wetherbeei_contig7278.1.1 ID=prot_P-wetherbeei_contig7278.1.1|Name=mRNA_P-wetherbeei_contig7278.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=354bp
MQASWHPLAADCIAVLAVSDAAAANGPQRDRRASAAAAGGANGVALWLHD
CRHAEPTQVVPLAGDAVAADDDGNGGGNGDGESDAGVVSFAFGSDRGWQR
FAVWLLKGDGTVMVACPVVPPGAAVRRAHLRALLAPVTARIVELDRFSGN
GGNGRDGERLSPTRPPADDLLETRNVVSEKKVLEEQRRWLLTVFGRWLAT
PAGGDGSGGDEDGDDRSLSPSQYGGSSGRDRHGEENGMVEDYVDVRRPGS
SPDSPQRQRRRRKTGGAGDSSGYCGSGGGGYGGGGRDSCGDEDAEHDDGD
LNAWVQVAGPVTVARWTVAVQDMVAVATQSPAAAAAGDDNVAACRIACLG
AGAT
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mRNA from alignment at P-wetherbeei_contig7278:2..1071+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig7278.1.1 ID=mRNA_P-wetherbeei_contig7278.1.1|Name=mRNA_P-wetherbeei_contig7278.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1070bp|location=Sequence derived from alignment at P-wetherbeei_contig7278:2..1071+ (Phaeothamnion wetherbeei SAG_119_79)
TGCGCATCATGCAGGCATCGTGGCACCCGCTTGCTGCCGACTGCATCGCC
GTCCTCGCCGTATCGGACGCCGCCGCGGCCAACGGACCTCAACGGGACAG
ACGGGCATCCGCTGCTGCGGCCGGCGGCGCAAATGGCGTAGCGCTTTGGC
TGCACGATTGCCGGCATGCCGAACCAACGCAAGTGGTTCCGCTCGCTGGA
GACGCCGTCGCCGCCGACGACGACGGCAACGGCGGTGGTAACGGCGACGG
CGAAAGCGACGCCGGCGTCGTCTCGTTCGCATTCGGGTCCGACCGTGGCT
GGCAGCGCTTTGCCGTCTGGCTCCTGAAGGGCGACGGCACCGTTATGGTC
GCCTGCCCCGTCGTGCCGCCCGGCGCCGCCGTCCGACGCGCGCATCTCCG
CGCGCTGCTGGCGCCAGTGACGGCACGCATCGTCGAACTAGACCGCTTCA
GCGGCAACGGCGGTAACGGCCGGGACGGCGAGAGGCTCAGCCCGACTCGG
CCGCCCGCCGACGACCTGCTCGAGACCCGAAACGTGGTTTCGGAAAAGAA
AGTACTGGAAGAGCAGCGGCGGTGGTTGCTGACGGTCTTTGGCCGGTGGC
TGGCGACTCCCGCCGGCGGCGACGGCAGCGGCGGCGACGAGGATGGCGAC
GACAGGTCGCTGTCACCGTCTCAATACGGCGGCTCGTCGGGCCGCGACAG
GCACGGCGAGGAGAACGGCATGGTGGAAGACTATGTCGATGTGCGACGTC
CCGGCAGCTCGCCGGATTCTCCGCAGCGGCAGCGGCGCCGCCGAAAAACG
GGAGGCGCCGGCGACAGCAGCGGTTATTGCGGCAGCGGCGGCGGCGGTTA
CGGCGGTGGCGGCAGGGACAGTTGCGGCGACGAGGATGCGGAGCACGACG
ACGGTGATCTGAACGCCTGGGTGCAGGTCGCCGGACCCGTAACGGTGGCG
CGGTGGACGGTAGCGGTCCAGGACATGGTTGCGGTGGCCACCCAGTCACC
CGCCGCCGCCGCCGCCGGCGACGACAACGTTGCCGCCTGCCGCATCGCGT
GCCTCGGCGCTGGCGCCACT
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Coding sequence (CDS) from alignment at P-wetherbeei_contig7278:2..1071+

>mRNA_P-wetherbeei_contig7278.1.1 ID=mRNA_P-wetherbeei_contig7278.1.1|Name=mRNA_P-wetherbeei_contig7278.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=1062bp|location=Sequence derived from alignment at P-wetherbeei_contig7278:2..1071+ (Phaeothamnion wetherbeei SAG_119_79)
ATGCAGGCATCGTGGCACCCGCTTGCTGCCGACTGCATCGCCGTCCTCGC
CGTATCGGACGCCGCCGCGGCCAACGGACCTCAACGGGACAGACGGGCAT
CCGCTGCTGCGGCCGGCGGCGCAAATGGCGTAGCGCTTTGGCTGCACGAT
TGCCGGCATGCCGAACCAACGCAAGTGGTTCCGCTCGCTGGAGACGCCGT
CGCCGCCGACGACGACGGCAACGGCGGTGGTAACGGCGACGGCGAAAGCG
ACGCCGGCGTCGTCTCGTTCGCATTCGGGTCCGACCGTGGCTGGCAGCGC
TTTGCCGTCTGGCTCCTGAAGGGCGACGGCACCGTTATGGTCGCCTGCCC
CGTCGTGCCGCCCGGCGCCGCCGTCCGACGCGCGCATCTCCGCGCGCTGC
TGGCGCCAGTGACGGCACGCATCGTCGAACTAGACCGCTTCAGCGGCAAC
GGCGGTAACGGCCGGGACGGCGAGAGGCTCAGCCCGACTCGGCCGCCCGC
CGACGACCTGCTCGAGACCCGAAACGTGGTTTCGGAAAAGAAAGTACTGG
AAGAGCAGCGGCGGTGGTTGCTGACGGTCTTTGGCCGGTGGCTGGCGACT
CCCGCCGGCGGCGACGGCAGCGGCGGCGACGAGGATGGCGACGACAGGTC
GCTGTCACCGTCTCAATACGGCGGCTCGTCGGGCCGCGACAGGCACGGCG
AGGAGAACGGCATGGTGGAAGACTATGTCGATGTGCGACGTCCCGGCAGC
TCGCCGGATTCTCCGCAGCGGCAGCGGCGCCGCCGAAAAACGGGAGGCGC
CGGCGACAGCAGCGGTTATTGCGGCAGCGGCGGCGGCGGTTACGGCGGTG
GCGGCAGGGACAGTTGCGGCGACGAGGATGCGGAGCACGACGACGGTGAT
CTGAACGCCTGGGTGCAGGTCGCCGGACCCGTAACGGTGGCGCGGTGGAC
GGTAGCGGTCCAGGACATGGTTGCGGTGGCCACCCAGTCACCCGCCGCCG
CCGCCGCCGGCGACGACAACGTTGCCGCCTGCCGCATCGCGTGCCTCGGC
GCTGGCGCCACT
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