mRNA_P-wetherbeei_contig7276.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79
|
Overview
Homology
BLAST of mRNA_P-wetherbeei_contig7276.1.1 vs. uniprot
Match: A0A182GYI1_AEDAL (Uncharacterized protein n=1 Tax=Aedes albopictus TaxID=7160 RepID=A0A182GYI1_AEDAL) HSP 1 Score: 188 bits (477), Expect = 8.390e-50 Identity = 108/263 (41.06%), Postives = 146/263 (55.51%), Query Frame = 2
Query: 260 HEALGHPSASVMERMDRLGLIKLRKPF----KLPFCDACQYGKSHREAANKNSPERAKQLFELVHSDMLGPITPATQSGYKYAIIFVDDLTRFRVVYLMRTKDEAAQKLQDYIGAFVTPRNLRIQRLRTDNGSEYRSSEFEHICKTNGYIKMECSAPYTQSQNGVSERSWRTEMEKARTMLYASGLPRNFWGHALLHANYLTNITPTTADVLGETC-PAAAFSGRQPEYSGLQPFGCPVFVHEDKQAGRTKLDPKARRGFFLG 1033
H GH + + + G++K KP + C+ C K R ++ R+ ++ ELVHSD+ GP+TP G KY F+DD TRF VV+L+R+KDE A + Y ++I RLRTDNG EY E CK G IKME + PYT QNGV+ER RT EKAR+ML+ S + R+FWG A+ A +LTN +P TA LGE P + R+P+ S L+ FG + H K+ R KLD K +G F+G
Sbjct: 320 HRRYGHLGERNLSSLMKAGMVKGMKPCDGDGSMITCEPCMAAKQTRNPFSQREERRSSRVLELVHSDVCGPVTPTGWDGDKYFATFIDDWTRFTVVFLLRSKDEVAGCFKQYEAEMTAKFGVKISRLRTDNGGEYVGKELRSFCKDKG-IKMEYTVPYTPEQNGVAERMNRTLEEKARSMLFDSDVDRSFWGEAVQTAAFLTNRSPATA--LGEKITPFEMWEKRKPDVSKLRVFGSLAYCHIPKER-RRKLDEKTWKGVFIG 578
BLAST of mRNA_P-wetherbeei_contig7276.1.1 vs. uniprot
Match: A0A8D8CFM1_CULPI (Copia protein (Fragment) n=1 Tax=Culex pipiens TaxID=7175 RepID=A0A8D8CFM1_CULPI) HSP 1 Score: 179 bits (455), Expect = 2.010e-49 Identity = 92/228 (40.35%), Postives = 136/228 (59.65%), Query Frame = 2
Query: 350 FCDACQYGKSHREAANKNSPERAKQLFELVHSDMLGPITPATQSGYKYAIIFVDDLTRFRVVYLMRTKDEAAQKLQDYIGAFVTPRNLRIQRLRTDNGSEYRSSEFEHICKTNGYIKMECSAPYTQSQNGVSERSWRTEMEKARTMLYASGLPRNFWGHALLHANYLTNITPTTADVLGETCPAAAFSGRQPEYSGLQPFGCPVFVHEDKQAGRTKLDPKARRGFFLG 1033
+C+ C K R+ R+K++ E+VH+D+ GPI+PA G +Y + F+DD +RF ++Y M++KD+ + Q Y ++I RLR DNG EY + FE C+ G I+M+ + PYT QNGVSER RT MEKAR+ML+ + + FWG A+ A YL N +P +A G+T P + GR+P+ S ++ +G P + H K+ R KLD K +G FLG
Sbjct: 3 YCEPCIEAKQTRKPFEDGPGRRSKRVLEIVHTDVCGPISPAGHDGCRYYVSFIDDWSRFAMLYTMQSKDQVFEYFQLYEAMVTAKFGVKISRLRCDNGGEYHNKNFEEFCRQKG-IQMQFTVPYTPEQNGVSERFNRTAMEKARSMLFDAQVDTKFWGEAVETAAYLVNRSPASAIEEGKT-PFELWEGRKPDVSAMKVWGSPAYCHVPKE-NRKKLDRKTWKGIFLG 227
BLAST of mRNA_P-wetherbeei_contig7276.1.1 vs. uniprot
Match: H3H7I4_PHYRM (Integrase catalytic domain-containing protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3H7I4_PHYRM) HSP 1 Score: 179 bits (454), Expect = 5.670e-49 Identity = 96/234 (41.03%), Postives = 134/234 (57.26%), Query Frame = 2
Query: 350 FCDACQYGKSHREAANKNSPERAKQLFELVHSDMLGPITPATQSGYKYAIIFVDDLTRFRVVYLMRTKDEAAQKLQDYIGAFVTPRNLRIQRLRTDNGSEYRSSEFEHICKTNGYIKMECSAPYTQSQNGVSERSWRTEMEKARTMLYASGLPRNFWGHALLHANYLTNITPTTADVLGETCPAAAFSGRQPEYSGLQPFGCPVFVHEDKQAGRTKLDPKARRGFFLGLATKSK 1051
CD C GK R + K+SP RAK + E+VHSD+ GP+ T G +Y + F+DD + F VVYL+R K E A K +++ T R+Q LR+DNG EY SS C G ++ + PYT NGV+ER RT ME AR ML +GLP+ +WG A++ A +L N PT A + + P ++ ++P + L+ FGC +VH K A RTK D ++ R FLG + K
Sbjct: 130 LCDGCALGKQTRVSYMKSSPNRAKHVLEVVHSDVCGPMQTPTFGGKRYFVTFIDDKSHFCVVYLLRNKSEVAAKFAEFVAFAETQTGKRVQTLRSDNGGEYTSSAMAKFCADRGIVQK-FTPPYTPQLNGVAERMNRTLMECARCMLEHAGLPKTYWGEAVMTATFLRNRCPTRA-ISHDKSPHQVWTSKKPLLANLKVFGCHAYVHVPK-AKRTKFDARSVRCRFLGYSEHEK 360
BLAST of mRNA_P-wetherbeei_contig7276.1.1 vs. uniprot
Match: H3H8Y7_PHYRM (Uncharacterized protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3H8Y7_PHYRM) HSP 1 Score: 184 bits (466), Expect = 3.200e-48 Identity = 101/248 (40.73%), Postives = 143/248 (57.66%), Query Frame = 2
Query: 308 RLGLIKLRKPFKLPFCDACQYGKSHREAANKNSPERAKQLFELVHSDMLGPITPATQSGYKYAIIFVDDLTRFRVVYLMRTKDEAAQKLQDYIGAFVTPRNLRIQRLRTDNGSEYRSSEFEHICKTNGYIKMECSAPYTQSQNGVSERSWRTEMEKARTMLYASGLPRNFWGHALLHANYLTNITPTTADVLGETCPAAAFSGRQPEYSGLQPFGCPVFVHEDKQAGRTKLDPKARRGFFLGLATKSK 1051
+LG+ K ++L CD C GK R K+SP RAKQ+ E+VHSD+ GP+ T G +Y + F+DD + F VVYL+R K E A K +++ T R+Q LR+DNG EY S C G ++ + PYT NGV+ER RT +E AR ML +GLP+ +WG A++ A +L N PT A + + P ++G++P + L+ FGC +VHE K A RTK D ++ R FLG + K
Sbjct: 78 KLGIQAFLKQWEL--CDGCALGKQTRVGYMKSSPNRAKQVLEVVHSDVCGPMQTPTFGGKRYFVTFIDDKSHFCVVYLLRNKSEVAAKFAEFVAFAETQTGKRVQTLRSDNGGEYTSGAMAKFCADRGIVQK-FTPPYTPQLNGVAERMNRTLVECARCMLEHAGLPKTYWGEAVMTATFLRNRCPTRA-ISHDKSPHQVWTGKKPLLANLKVFGCHAYVHEAK-AKRTKFDARSVRCRFLGYSEHEK 320
BLAST of mRNA_P-wetherbeei_contig7276.1.1 vs. uniprot
Match: H3H904_PHYRM (Integrase catalytic domain-containing protein n=2 Tax=Phytophthora ramorum TaxID=164328 RepID=H3H904_PHYRM) HSP 1 Score: 176 bits (447), Expect = 5.080e-48 Identity = 95/234 (40.60%), Postives = 134/234 (57.26%), Query Frame = 2
Query: 350 FCDACQYGKSHREAANKNSPERAKQLFELVHSDMLGPITPATQSGYKYAIIFVDDLTRFRVVYLMRTKDEAAQKLQDYIGAFVTPRNLRIQRLRTDNGSEYRSSEFEHICKTNGYIKMECSAPYTQSQNGVSERSWRTEMEKARTMLYASGLPRNFWGHALLHANYLTNITPTTADVLGETCPAAAFSGRQPEYSGLQPFGCPVFVHEDKQAGRTKLDPKARRGFFLGLATKSK 1051
CD C GK R + K+SP RAKQ+ E+VHSD+ GP+ T G +Y + F+DD + F VVYL+R K E A K +++ T R++ LR+DNG EY S C G ++ + PYT NGV+ER R +E AR ML +GLP+ +WG A++ A +L N PT A V + P ++G++P + L+ FGC +VH K A RTK D ++ R FLG + K
Sbjct: 9 LCDGCALGKQTRVSYMKSSPNRAKQVLEVVHSDVCGPMQTPTFGGKRYFVTFIDDKSHFCVVYLLRNKSEVAAKFAEFVAFAETQTGKRVKTLRSDNGGEYTSGAMAKFCADRGIVQK-FTPPYTPQLNGVAERMNRALVECARCMLEHAGLPKTYWGEAVMTAAFLRNRCPTRA-VSHDKSPHQVWTGKKPLLANLKVFGCHAYVHVPK-AKRTKFDARSVRCRFLGYSEHEK 239
BLAST of mRNA_P-wetherbeei_contig7276.1.1 vs. uniprot
Match: H3H9M8_PHYRM (Uncharacterized protein n=2 Tax=Phytophthora ramorum TaxID=164328 RepID=H3H9M8_PHYRM) HSP 1 Score: 180 bits (457), Expect = 1.090e-47 Identity = 97/234 (41.45%), Postives = 136/234 (58.12%), Query Frame = 2
Query: 350 FCDACQYGKSHREAANKNSPERAKQLFELVHSDMLGPITPATQSGYKYAIIFVDDLTRFRVVYLMRTKDEAAQKLQDYIGAFVTPRNLRIQRLRTDNGSEYRSSEFEHICKTNGYIKMECSAPYTQSQNGVSERSWRTEMEKARTMLYASGLPRNFWGHALLHANYLTNITPTTADVLGETCPAAAFSGRQPEYSGLQPFGCPVFVHEDKQAGRTKLDPKARRGFFLGLATKSK 1051
CD C GK R + K+SP RAKQ+ E+VHSD+ GP+ T G +Y + F+DD + F VVYL+R K E A K +++ T R+Q LR+DNG EY S C +G ++ + PYT NGV+ER RT +E AR ML +GLP+ +WG A++ A +L N PT A V + P ++G++P + L+ FGC +VH K A RTK D ++ R FLG + K
Sbjct: 9 LCDGCALGKQTRVSYMKSSPNRAKQVLEVVHSDVCGPMQTPTFGGKRYFVTFIDDKSHFCVVYLLRNKSEVAAKFAEFVAFAETQTGKRVQTLRSDNGGEYTSGAMAKFCADHGIVQK-FTPPYTPQLNGVAERMNRTLVECARCMLEHAGLPKTYWGEAVMTAAFLRNRCPTRA-VSHDKSPHQVWTGKKPLLANLKVFGCHAYVHVPK-AKRTKFDARSVRCRFLGYSEHEK 239
BLAST of mRNA_P-wetherbeei_contig7276.1.1 vs. uniprot
Match: H3H8T6_PHYRM (Integrase catalytic domain-containing protein n=5 Tax=Phytophthora ramorum TaxID=164328 RepID=H3H8T6_PHYRM) HSP 1 Score: 176 bits (446), Expect = 1.550e-47 Identity = 93/234 (39.74%), Postives = 135/234 (57.69%), Query Frame = 2
Query: 350 FCDACQYGKSHREAANKNSPERAKQLFELVHSDMLGPITPATQSGYKYAIIFVDDLTRFRVVYLMRTKDEAAQKLQDYIGAFVTPRNLRIQRLRTDNGSEYRSSEFEHICKTNGYIKMECSAPYTQSQNGVSERSWRTEMEKARTMLYASGLPRNFWGHALLHANYLTNITPTTADVLGETCPAAAFSGRQPEYSGLQPFGCPVFVHEDKQAGRTKLDPKARRGFFLGLATKSK 1051
CD C GK R + K+SP RAK + E+VHSD+ GP+ T G +Y + F+DD + F +VYL+R K E A K +++ T R++ LR+DNG EY S C +G ++ + PYT NGV+ER RT +E AR ML +GLP+ +WG A++ A +L N PT A + + P ++G++P + L+ FGC +VH K A RTK D ++ R FLG + K
Sbjct: 159 LCDGCALGKQTRVSYMKSSPNRAKHVLEVVHSDVCGPMQTPTFGGKRYFVTFIDDKSHFCMVYLLRNKSEVAAKFAEFVAFAETQTGKRVKTLRSDNGGEYTSGAMAKFCADHGIVQK-FTPPYTPQLNGVAERMNRTLVECARCMLEHAGLPKTYWGEAVMTATFLRNRCPTRA-ISHDKSPHQVWTGKKPLLANLKVFGCHAYVHVPK-AKRTKFDARSVRCRFLGYSEHEK 389
BLAST of mRNA_P-wetherbeei_contig7276.1.1 vs. uniprot
Match: H3H9F8_PHYRM (Uncharacterized protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3H9F8_PHYRM) HSP 1 Score: 179 bits (453), Expect = 1.800e-47 Identity = 96/234 (41.03%), Postives = 135/234 (57.69%), Query Frame = 2
Query: 350 FCDACQYGKSHREAANKNSPERAKQLFELVHSDMLGPITPATQSGYKYAIIFVDDLTRFRVVYLMRTKDEAAQKLQDYIGAFVTPRNLRIQRLRTDNGSEYRSSEFEHICKTNGYIKMECSAPYTQSQNGVSERSWRTEMEKARTMLYASGLPRNFWGHALLHANYLTNITPTTADVLGETCPAAAFSGRQPEYSGLQPFGCPVFVHEDKQAGRTKLDPKARRGFFLGLATKSK 1051
CD C GK R + K+SP RAKQ+ E+VHSD+ GP+ T G +Y + F+DD + F VVYL+R K E A K +++ T R+Q LR+DNG EY S C G ++ + PYT NGV++R RT +E AR ML +GLP+ +WG A++ A +L N PT A V + P ++G++P + L+ FGC +VH K A RTK D ++ R FLG + K
Sbjct: 9 LCDGCALGKQTRVSYMKSSPNRAKQVLEVVHSDVCGPMQTPTFGGKRYFVTFIDDKSHFCVVYLLRNKSEVAAKFAEFVAFAETQTGKRVQTLRSDNGGEYTSRAMTKFCADRGIVQK-FTPPYTPQLNGVAKRMNRTLVECARCMLEHAGLPKTYWGEAVMTATFLRNRCPTRA-VSHDKSPHQVWTGKKPLLANLKVFGCHAYVHVPK-AKRTKFDARSVRCRFLGYSEHEK 239
BLAST of mRNA_P-wetherbeei_contig7276.1.1 vs. uniprot
Match: H3H8A1_PHYRM (Integrase catalytic domain-containing protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3H8A1_PHYRM) HSP 1 Score: 178 bits (452), Expect = 2.020e-47 Identity = 96/234 (41.03%), Postives = 134/234 (57.26%), Query Frame = 2
Query: 350 FCDACQYGKSHREAANKNSPERAKQLFELVHSDMLGPITPATQSGYKYAIIFVDDLTRFRVVYLMRTKDEAAQKLQDYIGAFVTPRNLRIQRLRTDNGSEYRSSEFEHICKTNGYIKMECSAPYTQSQNGVSERSWRTEMEKARTMLYASGLPRNFWGHALLHANYLTNITPTTADVLGETCPAAAFSGRQPEYSGLQPFGCPVFVHEDKQAGRTKLDPKARRGFFLGLATKSK 1051
CD C GK R + K+SP RAK + E+VHSD+ GP+ T G +Y + F+DD + F VVYL+R K E A K +++ T R+Q LR+DNG EY S C G ++ + PYT NGV+ER RT +E AR ML +GLP+ +WG A++ A +L N PT A V + P ++G++P + L+ FGC +VH K A RTK D ++ R FLG + K
Sbjct: 9 LCDGCALGKQTRVSYMKSSPNRAKHVLEVVHSDVCGPMQTPTFGGKRYFVTFIDDKSHFCVVYLLRNKSEVAAKFAEFVAFAETQTGKRVQTLRSDNGGEYTSGAMAKFCADRGIVQK-FTPPYTPQLNGVAERMNRTLVECARCMLEHAGLPKTYWGEAVVTATFLRNRCPTRA-VSHDKSPHQVWTGKKPLLANLKVFGCHAYVHVPK-AKRTKFDARSVRCRFLGYSEHEK 239
BLAST of mRNA_P-wetherbeei_contig7276.1.1 vs. uniprot
Match: H3H9B4_PHYRM (Integrase catalytic domain-containing protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3H9B4_PHYRM) HSP 1 Score: 176 bits (446), Expect = 3.070e-47 Identity = 94/234 (40.17%), Postives = 134/234 (57.26%), Query Frame = 2
Query: 350 FCDACQYGKSHREAANKNSPERAKQLFELVHSDMLGPITPATQSGYKYAIIFVDDLTRFRVVYLMRTKDEAAQKLQDYIGAFVTPRNLRIQRLRTDNGSEYRSSEFEHICKTNGYIKMECSAPYTQSQNGVSERSWRTEMEKARTMLYASGLPRNFWGHALLHANYLTNITPTTADVLGETCPAAAFSGRQPEYSGLQPFGCPVFVHEDKQAGRTKLDPKARRGFFLGLATKSK 1051
CD C GK R + K+SP RAKQ+ E+VHSD+ GP+ T G +Y + F+DD + F VVYL+R K E A K +++ T R++ LR+DNG EY S C ++ + PYT NGV+ER RT +E AR ML +GLP+ +WG A++ A +L N PT A + + P ++G++P + L+ FGC +VH K A RTK D ++ R FLG + K
Sbjct: 82 LCDGCALGKQTRVSYMKSSPNRAKQVLEVVHSDVCGPMQTPTFGGKRYFVTFIDDKSHFCVVYLLRNKSEVAAKFAEFVAFAETQTGKRVKTLRSDNGGEYTSGAMAKFCADRDIVQK-FTPPYTPQLNGVAERMNRTLVECARCMLEHAGLPKTYWGEAVMTATFLRNRCPTRA-ISHDKSPHQVWTGKKPLLANLKVFGCHAYVHVPK-AKRTKFDARSVRCRFLGYSEHEK 312 The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig7276.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-wetherbeei_contig7276.1.1 >prot_P-wetherbeei_contig7276.1.1 ID=prot_P-wetherbeei_contig7276.1.1|Name=mRNA_P-wetherbeei_contig7276.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=395bp MTDGCGNSVRLGGTDDNLLYLTVVRRMGGQFGRRISSAGKKRQLGVMPGPback to top mRNA from alignment at P-wetherbeei_contig7276:188..1382- Legend: UTRCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-wetherbeei_contig7276.1.1 ID=mRNA_P-wetherbeei_contig7276.1.1|Name=mRNA_P-wetherbeei_contig7276.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1195bp|location=Sequence derived from alignment at P-wetherbeei_contig7276:188..1382- (Phaeothamnion wetherbeei SAG_119_79)back to top Coding sequence (CDS) from alignment at P-wetherbeei_contig7276:188..1382- >mRNA_P-wetherbeei_contig7276.1.1 ID=mRNA_P-wetherbeei_contig7276.1.1|Name=mRNA_P-wetherbeei_contig7276.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=1185bp|location=Sequence derived from alignment at P-wetherbeei_contig7276:188..1382- (Phaeothamnion wetherbeei SAG_119_79)back to top |