mRNA_P-wetherbeei_contig7275.4.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig7275.4.1
Unique NamemRNA_P-wetherbeei_contig7275.4.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig7275.4.1 vs. uniprot
Match: D7FJB1_ECTSI (Fucokinase domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJB1_ECTSI)

HSP 1 Score: 122 bits (306), Expect = 6.440e-30
Identity = 70/122 (57.38%), Postives = 82/122 (67.21%), Query Frame = 1
Query:   25 DCPFDVIAVTAPNERAALAFLDELAFRFGVDEGSSFKRKANHLEVVLFVIADPAGARIGSGGGTLNALDFMSHAF--TPLSS------GLARRRTLLVHSGGDSQRSPTQCVCGKAWAALNS 366
            D PFD +A+TAPN RAA A+LDEL  R GV+     K      EV++  ++DP G RIGSGGGTLNA+  +  A     LS+      GLA  R LLVHSGGDSQRSPTQCVCGKAW+ALNS
Sbjct:   33 DSPFDCLAITAPNPRAAKAYLDELVHRVGVNGTEGTK------EVLILAVSDPEGVRIGSGGGTLNAVLEIHQALRAAQLSNDNQDPQGLAAARVLLVHSGGDSQRSPTQCVCGKAWSALNS 148          
BLAST of mRNA_P-wetherbeei_contig7275.4.1 vs. uniprot
Match: A0A6H5LE27_9PHAE (FK protein ( GFPPprotein ) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LE27_9PHAE)

HSP 1 Score: 115 bits (288), Expect = 1.910e-27
Identity = 66/119 (55.46%), Postives = 79/119 (66.39%), Query Frame = 1
Query:   34 FDVIAVTAPNERAALAFLDELAFRFGVDEGSSFKRKANHLEVVLFVIADPAGARIGSGGGTLNALDFMSHAF--TPLSS------GLARRRTLLVHSGGDSQRSPTQCVCGKAWAALNS 366
            FD +A+TAPN RA+ A+LDEL  R G+      K      EV++  ++DP G RIGSGGGTLNA+  +  A     LS+      GLA  R LLVHSGGDSQRSPTQCVCGKAW+ALNS
Sbjct:   36 FDCLAITAPNPRASKAYLDELVHRVGMSGTEGTK------EVLILAVSDPEGVRIGSGGGTLNAVLEIDQALRAAQLSNDSQDPQGLAAARVLLVHSGGDSQRSPTQCVCGKAWSALNS 148          
BLAST of mRNA_P-wetherbeei_contig7275.4.1 vs. uniprot
Match: W7TJC8_9STRA (L-fucose kinase n=4 Tax=Monodopsidaceae TaxID=425072 RepID=W7TJC8_9STRA)

HSP 1 Score: 99.4 bits (246), Expect = 8.740e-22
Identity = 60/125 (48.00%), Postives = 77/125 (61.60%), Query Frame = 1
Query:   31 PFDVIAVTAPNERAALAFLDELAFRF---------GVDEGSSFKRKANHLEVVLFVIADPAGARIGSGGGTLNALDFMSHAFTPL----SSGLARRRTLLVHSGGDSQRSPTQCVCGKAWAALNS 366
            PF V+ VTAP ER+A A+ +EL  R          G++   S K + N  E++L  +ADP G R+GSGGGTLNAL  + H++  +    SS       L+VHSGGDSQRSPT  VCGKAW+ LNS
Sbjct:    7 PFPVVVVTAPTERSAEAYQEELQARLSKRYFAVCPGLNNDESSKEE-NEQELILLAVADPLGKRVGSGGGTLNALVHV-HSYLQVHHFVSSAGQWPAILMVHSGGDSQRSPTNSVCGKAWSCLNS 129          
BLAST of mRNA_P-wetherbeei_contig7275.4.1 vs. uniprot
Match: A0A0G4EMB4_VITBC (Uncharacterized protein n=2 Tax=Vitrella brassicaformis TaxID=1169539 RepID=A0A0G4EMB4_VITBC)

HSP 1 Score: 81.6 bits (200), Expect = 1.420e-15
Identity = 55/111 (49.55%), Postives = 63/111 (56.76%), Query Frame = 1
Query:   31 PFDVIAVTAPNERAALAFLDELAFRFGVDEGSSFKRKANHLEVVLFVIADPAGARIGSGGGTLNALDFMSHAFTPLSSGLARRRTLLVHSGGDSQRSPTQCVCGKAWAALN 363
            PF  + VTA N+  A AF  E+AFR     GS       H      VI+DP GARIGSGG TLNAL   +    P     A    L++HSGGDSQRSP Q VCGKA+A LN
Sbjct:    6 PFTSLIVTAANDAQASAFEREVAFRRAT--GSIPPSCKTH------VISDPKGARIGSGGATLNALVRCAPGGPP-----ADELLLIIHSGGDSQRSPVQSVCGKAFATLN 103          
BLAST of mRNA_P-wetherbeei_contig7275.4.1 vs. uniprot
Match: A0A7S3ZKC8_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S3ZKC8_9STRA)

HSP 1 Score: 74.3 bits (181), Expect = 4.950e-13
Identity = 39/67 (58.21%), Postives = 47/67 (70.15%), Query Frame = 1
Query:  172 IADPAGARIGSGGGTLNAL----DFMSHAFTPLSSGLARRRTLLVHSGGDSQRSPTQCVCGKAWAAL 360
            +ADPAG RIGSGGGTLNAL    D +  A+      L  R  L++HSGGDSQR+P+Q VCGKAW+ L
Sbjct:   53 VADPAGRRIGSGGGTLNALKAAHDLLGDAW------LDNRLILIIHSGGDSQRAPSQSVCGKAWSLL 113          
BLAST of mRNA_P-wetherbeei_contig7275.4.1 vs. uniprot
Match: A0A7S0EI35_9CRYP (Hypothetical protein (Fragment) n=1 Tax=Hanusia phi TaxID=3032 RepID=A0A7S0EI35_9CRYP)

HSP 1 Score: 72.4 bits (176), Expect = 2.200e-12
Identity = 45/109 (41.28%), Postives = 64/109 (58.72%), Query Frame = 1
Query:   34 FDVIAVTAPNERAALAFLDELAFRFGVDEGSSFKRKANHLEVVLFVIADPAGARIGSGGGTLNALDFMSHAFTPLSSGLARRRTLLVHSGGDSQRSPTQCVCGKAWAAL 360
            FDV+ +TA +E+ A  + ++L +R  +    S  R + H      V+ DP G +IG+GG T  ALDF+ H +     GL   R LL+H+GG SQR+P   VCGK +AAL
Sbjct:   26 FDVVVITASDEQQAKIYEEQLLWRKQLKTIPS--RPSYH------VLHDPPGVKIGNGGATFVALDFLRHKYPTQFDGL---RILLIHAGGYSQRTPQHSVCGKIFAAL 123          
BLAST of mRNA_P-wetherbeei_contig7275.4.1 vs. uniprot
Match: A0A196SM10_BLAHN (L-fucose kinase-like protein n=1 Tax=Blastocystis sp. subtype 1 (strain ATCC 50177 / NandII) TaxID=478820 RepID=A0A196SM10_BLAHN)

HSP 1 Score: 71.6 bits (174), Expect = 4.520e-12
Identity = 48/120 (40.00%), Postives = 68/120 (56.67%), Query Frame = 1
Query:   34 FDVIAVTAPNERAALAFLDELAFRFGVDEGSSFKRKANHLEVVLFVIA--DPAGARIGSGGGTLNAL----DFMSH--AFTPLSSG-LARRRTLLVHSGGDSQRSPTQCVCGKAWAALNS 366
            F  I VTA   + A A+  EL  R          +K+  +    FV+A  DP+ AR+GSGG T NA+    + +S    F  +S   LA  + +++HSGGDS+RSP Q +CGKAW+A+NS
Sbjct:   12 FTAIVVTAAGAKQAAAYQTELEHR----------QKSGLIPKETFVLAVPDPSSARVGSGGATFNAIVAACEHLSARAGFASVSPDILANSKIVIIHSGGDSRRSPLQSLCGKAWSAVNS 121          
BLAST of mRNA_P-wetherbeei_contig7275.4.1 vs. uniprot
Match: UPI0007121680 (fucose kinase n=1 Tax=Blastocystis sp. subtype 4 TaxID=944170 RepID=UPI0007121680)

HSP 1 Score: 71.2 bits (173), Expect = 6.030e-12
Identity = 48/120 (40.00%), Postives = 68/120 (56.67%), Query Frame = 1
Query:   34 FDVIAVTAPNERAALAFLDELAFRFGVDEGSSFKRKANHLEVVLFVIA--DPAGARIGSGGGTLNAL----DFMSH--AFTPLSSG-LARRRTLLVHSGGDSQRSPTQCVCGKAWAALNS 366
            F  I VTA   + A A+  EL  R          +K+  +    FV+A  DP+ AR+GSGG T NA+    + +S    F  +S   LA  + +++HSGGDS+RSP Q +CGKAW+A+NS
Sbjct:    4 FTAIVVTAAGAKQASAYQAELEHR----------QKSGFIPKNTFVLAVPDPSSARVGSGGATFNAIVAACEHLSARAGFASVSPDILANSKIVIIHSGGDSRRSPLQSLCGKAWSAVNS 113          
BLAST of mRNA_P-wetherbeei_contig7275.4.1 vs. uniprot
Match: A0A8J9X893_PHATR (Hypothetical protein (Fragment) n=1 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=A0A8J9X893_PHATR)

HSP 1 Score: 70.9 bits (172), Expect = 7.300e-12
Identity = 46/116 (39.66%), Postives = 62/116 (53.45%), Query Frame = 1
Query:   31 PFDVIAVTAPNERAALAFLDELAFRFGVDEGSSFKRKANHLEVVLFVIADPAGARIGSGGGTLNALDFM------SHAFTPLSSGLARRRTLLVHSGGDSQRSPTQCVCGKAWAAL 360
            PFD + +T P++RAA A       +F          + ++  V L    DP G R+GSGGGTLNALD +      S A T L    A    L++H+GG+S R PTQ + GKAW +L
Sbjct:    9 PFDRVVLTFPDQRAADAAASSTLPQFV---------RESYRNVTLVTACDPLGTRVGSGGGTLNALDVVFSASRDSDAHTNLLDDEACS-ILVIHAGGESSRCPTQMILGKAWTSL 114          
BLAST of mRNA_P-wetherbeei_contig7275.4.1 vs. uniprot
Match: B7S4B1_PHATC (Predicted protein n=1 Tax=Phaeodactylum tricornutum (strain CCAP 1055/1) TaxID=556484 RepID=B7S4B1_PHATC)

HSP 1 Score: 70.9 bits (172), Expect = 8.240e-12
Identity = 46/116 (39.66%), Postives = 62/116 (53.45%), Query Frame = 1
Query:   31 PFDVIAVTAPNERAALAFLDELAFRFGVDEGSSFKRKANHLEVVLFVIADPAGARIGSGGGTLNALDFM------SHAFTPLSSGLARRRTLLVHSGGDSQRSPTQCVCGKAWAAL 360
            PFD + +T P++RAA A       +F          + ++  V L    DP G R+GSGGGTLNALD +      S A T L    A    L++H+GG+S R PTQ + GKAW +L
Sbjct:    9 PFDRVVLTFPDQRAADAAASSTLPQFV---------RESYRNVTLVTACDPLGTRVGSGGGTLNALDVVFSASRDSDAHTNLVDDEACS-ILVIHAGGESSRCPTQMILGKAWTSL 114          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig7275.4.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FJB1_ECTSI6.440e-3057.38Fucokinase domain-containing protein n=1 Tax=Ectoc... [more]
A0A6H5LE27_9PHAE1.910e-2755.46FK protein ( GFPPprotein ) n=1 Tax=Ectocarpus sp. ... [more]
W7TJC8_9STRA8.740e-2248.00L-fucose kinase n=4 Tax=Monodopsidaceae TaxID=4250... [more]
A0A0G4EMB4_VITBC1.420e-1549.55Uncharacterized protein n=2 Tax=Vitrella brassicaf... [more]
A0A7S3ZKC8_9STRA4.950e-1358.21Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
A0A7S0EI35_9CRYP2.200e-1241.28Hypothetical protein (Fragment) n=1 Tax=Hanusia ph... [more]
A0A196SM10_BLAHN4.520e-1240.00L-fucose kinase-like protein n=1 Tax=Blastocystis ... [more]
UPI00071216806.030e-1240.00fucose kinase n=1 Tax=Blastocystis sp. subtype 4 T... [more]
A0A8J9X893_PHATR7.300e-1239.66Hypothetical protein (Fragment) n=1 Tax=Phaeodacty... [more]
B7S4B1_PHATC8.240e-1239.66Predicted protein n=1 Tax=Phaeodactylum tricornutu... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig7275contigP-wetherbeei_contig7275:2101..2775 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog2880.D7FJB1
PFAMsFucokinase,GHMP_kinases_C,GHMP_kinases_N
Model size366
Max annot lvl2759|Eukaryota
KEGG rclassRC00002,RC00078
KEGG koko:K00976,ko:K05305
KEGG ReactionR01951,R03161
KEGG Pathwayko00051,ko00520,ko01100,map00051,map00520,map01100
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003824,GO:0006139,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009117,GO:0009165,GO:0009225,GO:0009226,GO:0009987,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016773,GO:0016779,GO:0018130,GO:0019438,GO:0019637,GO:0034641,GO:0034654,GO:0042350,GO:0042352,GO:0043094,GO:0043173,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0046368,GO:0046483,GO:0047341,GO:0050201,GO:0055086,GO:0070568,GO:0071704,GO:0090407,GO:1901135,GO:1901137,GO:1901293,GO:1901360,GO:1901362,GO:1901576
Exons2
Evalue1.06e-30
EggNOG OGsCOG2605@1|root,KOG4644@2759|Eukaryota
EC2.7.1.52,2.7.7.30
DescriptionGDP-L-fucose salvage
Cds size366
COG categoryJ
BRITEko00000,ko00001,ko01000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186969.5304308-CDS-P-wetherbeei_contig7275:2100..22521683186969.5304308-CDS-P-wetherbeei_contig7275:2100..2252Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig7275 2101..2252 +
1683186969.5429409-CDS-P-wetherbeei_contig7275:2561..27751683186969.5429409-CDS-P-wetherbeei_contig7275:2561..2775Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig7275 2562..2775 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig7275.4.1prot_P-wetherbeei_contig7275.4.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig7275 2101..2775 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig7275.4.1

>prot_P-wetherbeei_contig7275.4.1 ID=prot_P-wetherbeei_contig7275.4.1|Name=mRNA_P-wetherbeei_contig7275.4.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=122bp
MRVSTAAADCPFDVIAVTAPNERAALAFLDELAFRFGVDEGSSFKRKANH
LEVVLFVIADPAGARIGSGGGTLNALDFMSHAFTPLSSGLARRRTLLVHS
GGDSQRSPTQCVCGKAWAALNS
back to top

mRNA from alignment at P-wetherbeei_contig7275:2101..2775+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig7275.4.1 ID=mRNA_P-wetherbeei_contig7275.4.1|Name=mRNA_P-wetherbeei_contig7275.4.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=675bp|location=Sequence derived from alignment at P-wetherbeei_contig7275:2101..2775+ (Phaeothamnion wetherbeei SAG_119_79)
ATGAGGGTCAGCACCGCTGCCGCCGACTGTCCGTTCGACGTGATCGCCGT CACTGCGCCAAACGAGAGAGCGGCTCTAGCCTTTTTGGACGAGCTTGCAT TTCGATTTGGTGTCGACGAAGGTAGCAGCTTCAAGCGCAAAGCCAACCAC CTGTTTCTGTTGTTACATGCATTTCACGGCGCACAGATGTCTCTCTGCCT GCCCAAGGTATCCCTGACCTTGTCATGAGAGAAACTGCAAATGCTGATGA GAGAAGGATCATGCGCAAAGTGCAAAACGTTGCACCGCGTGGCAGTCTCA CTCAAGGAAAACTTGAAATATGCCTTGGCCTTTTCCATATCGAGCATGGG AATGGCCGGTTTCCATCTCACACTTCCTCCATGACCCGCTTGCTGATGTG TCGCCCTACTCTCTTCATAATGTTTCTTCCTACTGTTTTGTTAAGGTGGG CACTCAGGCAGGGAGGTCGTCTTGTTCGTCATCGCCGACCCCGCTGGCGC GCGGATTGGCAGCGGCGGTGGCACCCTGAATGCCCTGGACTTCATGTCCC ATGCCTTCACGCCCCTTTCTTCCGGCCTGGCGCGGCGCCGCACGCTGCTG GTGCACTCGGGAGGCGACAGCCAGCGTTCCCCGACCCAGTGCGTCTGCGG CAAGGCATGGGCGGCGCTCAATTCC
back to top

Coding sequence (CDS) from alignment at P-wetherbeei_contig7275:2101..2775+

>mRNA_P-wetherbeei_contig7275.4.1 ID=mRNA_P-wetherbeei_contig7275.4.1|Name=mRNA_P-wetherbeei_contig7275.4.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=366bp|location=Sequence derived from alignment at P-wetherbeei_contig7275:2101..2775+ (Phaeothamnion wetherbeei SAG_119_79)
ATGAGGGTCAGCACCGCTGCCGCCGACTGTCCGTTCGACGTGATCGCCGT
CACTGCGCCAAACGAGAGAGCGGCTCTAGCCTTTTTGGACGAGCTTGCAT
TTCGATTTGGTGTCGACGAAGGTAGCAGCTTCAAGCGCAAAGCCAACCAC
CTGGAGGTCGTCTTGTTCGTCATCGCCGACCCCGCTGGCGCGCGGATTGG
CAGCGGCGGTGGCACCCTGAATGCCCTGGACTTCATGTCCCATGCCTTCA
CGCCCCTTTCTTCCGGCCTGGCGCGGCGCCGCACGCTGCTGGTGCACTCG
GGAGGCGACAGCCAGCGTTCCCCGACCCAGTGCGTCTGCGGCAAGGCATG
GGCGGCGCTCAATTCC
back to top