mRNA_P-wetherbeei_contig7257.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig7257.1.1
Unique NamemRNA_P-wetherbeei_contig7257.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig7257.1.1 vs. uniprot
Match: A0A836CKX7_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CKX7_9STRA)

HSP 1 Score: 113 bits (283), Expect = 2.630e-27
Identity = 61/93 (65.59%), Postives = 74/93 (79.57%), Query Frame = 1 
Query:    1 RVAVSKQQLAWEGISATLGALFGRMKDLEVNRRVAIRKGLLAILQRQDEMLRGLPPLKDPVLQVLERINTDRRFLDAEIRESMRS-GAARIKV 276
            RVAV++Q  A +  SA LGALFG MKDLEVNRR AIR  LL++LQ QD + R LP LKDPVLQVLERINTDRRFLD E+R++MR+  AA+++ 
Sbjct:  263 RVAVTQQLAACDAASAQLGALFGHMKDLEVNRRTAIRNALLSLLQAQDLVWRQLPILKDPVLQVLERINTDRRFLDGEVRDAMRTLSAAKLRT 355
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BLAST of mRNA_P-wetherbeei_contig7257.1.1 vs. uniprot
Match: A0A6H5KEN9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KEN9_9PHAE)

HSP 1 Score: 110 bits (276), Expect = 1.630e-26
Identity = 55/93 (59.14%), Postives = 69/93 (74.19%), Query Frame = 1 
Query:    1 RVAVSKQQLAWEGISATLGALFGRMKDLEVNRRVAIRKGLLAILQRQDEMLRGLPPLKDPVLQVLERINTDRRFLDAEIRESMRSGAARIKVG 279
            RVAV++Q   W+G+SA LG LFG+MKD+EV RR AI+ GL A++Q QD + R LP LKDPVL  L+RIN DR  LD E+R+ MR GAAR+  G
Sbjct:  365 RVAVTQQARVWKGVSAKLGDLFGKMKDIEVERRKAIQGGLTAMVQLQDALWRDLPALKDPVLHTLDRINVDRHLLDQEVRQQMRVGAARLLAG 457
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BLAST of mRNA_P-wetherbeei_contig7257.1.1 vs. uniprot
Match: D8LNW9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LNW9_ECTSI)

HSP 1 Score: 109 bits (272), Expect = 8.060e-26
Identity = 54/93 (58.06%), Postives = 69/93 (74.19%), Query Frame = 1 
Query:    1 RVAVSKQQLAWEGISATLGALFGRMKDLEVNRRVAIRKGLLAILQRQDEMLRGLPPLKDPVLQVLERINTDRRFLDAEIRESMRSGAARIKVG 279
            RVAV++Q   W+G+SA LG LFGRMKD+EV RR AI+ GL A++Q QD + R LP LK+PV+  L+RIN DR  LD E+R+ MR GAAR+  G
Sbjct:  323 RVAVTQQARVWKGVSAKLGDLFGRMKDIEVERRKAIQGGLTAMVQLQDALWRDLPALKEPVVHTLDRINVDRHLLDQEVRQQMRVGAARLLAG 415
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig7257.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A836CKX7_9STRA2.630e-2765.59Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A6H5KEN9_9PHAE1.630e-2659.14Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LNW9_ECTSI8.060e-2658.06Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig7257contigP-wetherbeei_contig7257:1650..2633 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D8LNW9
Model size279
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons3
Evalue1.32e-26
EggNOG OGs28I9V@1|root,2QQK9@2759|Eukaryota
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-08_005520.1
Cds size279
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186968.5559812-CDS-P-wetherbeei_contig7257:1649..17391683186968.5559812-CDS-P-wetherbeei_contig7257:1649..1739Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig7257 1650..1739 -
1683186968.566717-CDS-P-wetherbeei_contig7257:2167..22541683186968.566717-CDS-P-wetherbeei_contig7257:2167..2254Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig7257 2168..2254 -
1683186968.5759206-CDS-P-wetherbeei_contig7257:2531..26331683186968.5759206-CDS-P-wetherbeei_contig7257:2531..2633Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig7257 2532..2633 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig7257.1.1prot_P-wetherbeei_contig7257.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig7257 1650..2633 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig7257.1.1

>prot_P-wetherbeei_contig7257.1.1 ID=prot_P-wetherbeei_contig7257.1.1|Name=mRNA_P-wetherbeei_contig7257.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=93bp
RVAVSKQQLAWEGISATLGALFGRMKDLEVNRRVAIRKGLLAILQRQDEM
LRGLPPLKDPVLQVLERINTDRRFLDAEIRESMRSGAARIKVG
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mRNA from alignment at P-wetherbeei_contig7257:1650..2633-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig7257.1.1 ID=mRNA_P-wetherbeei_contig7257.1.1|Name=mRNA_P-wetherbeei_contig7257.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=984bp|location=Sequence derived from alignment at P-wetherbeei_contig7257:1650..2633- (Phaeothamnion wetherbeei SAG_119_79)
AGGGTAGCGGTGTCGAAGCAGCAGCTGGCATGGGAGGGCATCAGTGCCAC
GCTCGGCGCGCTCTTTGGTCGGATGAAGGATCTCGAAGTCAACCGCCGCG
TTGTGAGTTTGATAAAGAAAGGATGGGGAGAAAGAAGTGCTATGCAATTT
CGATCTCAGTCCGCTAGAATGGGATGTTGTGCTGGAGGGTCTTTCTGCAC
CTAGCCCACATTGCACAATTCTGTTCTTGCACGTCCAAGCCGCTGGAGGT
TGCGGATGCCTACTGTGGTGTCGGCAGTCGCCCGTCCTTTTCAAGGCGCT
TTTTACTGGCTCATTGTCGTATCGCGCTTGCCACCGCCTCGGGGTGTGCG
GGTCGCTTGTTGACCGCCATTGCCCGCAGGCGATTCGGAAGGGACTGCTG
GCGATCCTGCAGCGGCAAGATGAGATGCTGCGGGGGCTGCCTCCGCTGAA
GGACCCCGTCCTTCAGGTGAGCCTCCATTGGGTTGCCGCACGAGTCCCGT
CGACGGCGGCAGCAGTGGCGGTGATGGTAGTGGGGATGACCGGCGGCAGC
AGCGGTGGTGGCGGGCTGTGGCGATTAGAGCAGCAGCCGCGGCAGCAAGC
GCAGCGGGTGCGATGGCAACAGCTGCGGCGCGCGATGGTTTCGATGGCAG
CGGTGGCGGGCGGGCTTTGATGCCGGTTCCGAAGGCTGCCGTAGGGGCTT
TGGCGGCGATTCCAACAAGCTATGGACGCTCTTCGTCCCCTCAGAGGCGG
CCGCAGCTGCCGGCCATGCTGCATTGCGGCCGCCTGAGCTCTTTCGCGGT
GTTTGCGCCGCAAATTGCTGCTCCTCACTCCTTTTTGCGCTACCACTTGT
TTTGTTTTCTGTCGTCTCCGTCCCCTTTCTTTTTTGGTATTCAGGTGCTG
GAGCGCATCAACACGGACCGCCGCTTCCTCGACGCCGAGATCCGGGAATC
CATGCGCTCAGGCGCGGCGCGGATCAAAGTGGGT
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Coding sequence (CDS) from alignment at P-wetherbeei_contig7257:1650..2633-

>mRNA_P-wetherbeei_contig7257.1.1 ID=mRNA_P-wetherbeei_contig7257.1.1|Name=mRNA_P-wetherbeei_contig7257.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=279bp|location=Sequence derived from alignment at P-wetherbeei_contig7257:1650..2633- (Phaeothamnion wetherbeei SAG_119_79)
AGGGTAGCGGTGTCGAAGCAGCAGCTGGCATGGGAGGGCATCAGTGCCAC
GCTCGGCGCGCTCTTTGGTCGGATGAAGGATCTCGAAGTCAACCGCCGCG
TTGCGATTCGGAAGGGACTGCTGGCGATCCTGCAGCGGCAAGATGAGATG
CTGCGGGGGCTGCCTCCGCTGAAGGACCCCGTCCTTCAGGTGCTGGAGCG
CATCAACACGGACCGCCGCTTCCTCGACGCCGAGATCCGGGAATCCATGC
GCTCAGGCGCGGCGCGGATCAAAGTGGGT
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