mRNA_P-wetherbeei_contig7251.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig7251.1.1
Unique NamemRNA_P-wetherbeei_contig7251.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig7251.1.1 vs. uniprot
Match: A0A6H5K7J4_9PHAE (Fructose-bisphosphatase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K7J4_9PHAE)

HSP 1 Score: 114 bits (285), Expect = 2.070e-26
Identity = 81/163 (49.69%), Postives = 96/163 (58.90%), Query Frame = 1
Query:    1 PLDCMDVLLEETYARLAELADRVAVAQRRLARSRAALACTVRVIALLLRCRFSLGDAEHASLVAHLQPDVADDDDCYGGNGSGNGGVEXXXXVDGSGIGWEESVDAAMTHLLRTALAKSAKDEGAAAPAATVAAP-----DTNRLKKHLGIVCARISAGACLV 474
            PLD +DV+ EETY RL EL D V  AQ RLA S A L C VR++ALL + RF L   +H  L+AHL PDV + +D                       GWEESVDAA+THLLRT+LAK AKD  AA P+A    P     DT +LKKHL IV  R++ GA LV
Sbjct:  967 PLDSLDVVSEETYQRLVELCDGVERAQDRLAVSAARLGCAVRLVALLAQHRFQLSCKDHELLLAHLYPDVTNTED----------------------QGWEESVDAAVTHLLRTSLAKVAKD--AAPPSAGQTPPLSMPADTVKLKKHLSIVFDRLNKGARLV 1105          
BLAST of mRNA_P-wetherbeei_contig7251.1.1 vs. uniprot
Match: D8LTW5_ECTSI (Bardet-Biedl syndrome 9, parathyroid hormone-responsive B1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LTW5_ECTSI)

HSP 1 Score: 109 bits (273), Expect = 8.190e-25
Identity = 79/163 (48.47%), Postives = 95/163 (58.28%), Query Frame = 1
Query:    1 PLDCMDVLLEETYARLAELADRVAVAQRRLARSRAALACTVRVIALLLRCRFSLGDAEHASLVAHLQPDVADDDDCYGGNGSGNGGVEXXXXVDGSGIGWEESVDAAMTHLLRTALAKSAKDEGAAAPAATVAAP-----DTNRLKKHLGIVCARISAGACLV 474
            PLD +DV+ EETY RL EL D V  AQ RLA S A L C VR++ALL + RF L   +H  L+AHL PDV + ++                       GWEESV AA+THLLRT+LAK AKD  AA P+A    P     DT +LKKHL IV  R++ GA LV
Sbjct:  891 PLDSLDVVSEETYQRLVELCDGVERAQDRLAVSAARLGCAVRLVALLAQHRFQLPCKDHTLLLAHLYPDVTNTEE----------------------QGWEESVHAAVTHLLRTSLAKVAKD--AAPPSAGQTPPLSMPADTVKLKKHLSIVFDRLNKGARLV 1029          
BLAST of mRNA_P-wetherbeei_contig7251.1.1 vs. uniprot
Match: A0A7S2G715_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2G715_9STRA)

HSP 1 Score: 100 bits (249), Expect = 1.350e-21
Identity = 64/159 (40.25%), Postives = 93/159 (58.49%), Query Frame = 1
Query:    1 PLDCMDVLLEETYARLAELADRVAVAQRRLARSRAALACTVRVIALLLRCRFSLGDAEHASLVAHLQPDVADDDDCYGGNGSGNGGVEXXXXVDGSGIGWEESVDAAMTHLLRTALAKSAKDEGAAAPAATVAAPDTNRLKKHLGIVCARISAGACLVS 477
            PL+ +DVL+EET++ + E+AD+++  QRRLA++  AL+CT  +I +L + RFSL D + + L  +L P+V D D                        GWEESVDAA+THLL+T LAKS+K+         V   DT RLK+H+ I+  R+S G  L +
Sbjct:  758 PLNNLDVLMEETHSDVMEVADKISSLQRRLAKASNALSCTTNIIIMLAQFRFSLSDEDVSILRTYLTPNVRDMD----------------------AQGWEESVDAALTHLLKTTLAKSSKESTVVVNQPLVMPKDTMRLKRHIQIMFDRLSKGISLTA 894          
BLAST of mRNA_P-wetherbeei_contig7251.1.1 vs. uniprot
Match: A0A7S3YME0_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3YME0_HETAK)

HSP 1 Score: 99.8 bits (247), Expect = 1.920e-21
Identity = 67/154 (43.51%), Postives = 86/154 (55.84%), Query Frame = 1
Query:    1 PLDCMDVLLEETYARLAELADRVAVAQRRLARSRAALACTVRVIALLLRCRFSLGDAEHASLVAHLQPDVADDDDCYGGNGSGNGGVEXXXXVDGSGIGWEESVDAAMTHLLRTALAKSAKDEGAAAPAATVAAPDTNRLKKHLGIVCARISAG 462
            PL  +DVL+EETY RL ELA  V  AQ  L R+   L+CT R+I +L+R RF L D     L A+  P+V                      VD    GWEE VDAAMT+LLRTALAK+ K+     P+  + A DT +L+KH+ IVC R++ G
Sbjct:  314 PLAALDVLMEETYKRLLELAGEVEAAQAALRRAANRLSCTARLILMLVRYRFGLDDTNFNILSANFCPEV----------------------VDNPEQGWEELVDAAMTYLLRTALAKTQKETALLQPSVAMPA-DTAKLRKHISIVCDRLNKG 444          
BLAST of mRNA_P-wetherbeei_contig7251.1.1 vs. uniprot
Match: A0A7S2UYB3_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UYB3_9STRA)

HSP 1 Score: 92.4 bits (228), Expect = 4.570e-20
Identity = 62/157 (39.49%), Postives = 90/157 (57.32%), Query Frame = 1
Query:    1 PLDCMDVLLEETYARLAELADRVAVAQRRLARSRAALACTVRVIALLLRCRFSLGDAEHASLVAHLQPDVADDDDCYGGNGSGNGGVEXXXXVDGSGIGWEESVDAAMTHLLRTALAKSAKDEGAAAPAATVAAPDTNRLKKHLGIVCARISAGACL 471
            PL  +D L+EE+Y RL ELA++V   Q+RL  +  AL+CT  +I +L+R RF L D  +  L AH  P V   +DC                   +  GWEE VDA+MT+LLRT LAK+ K+      + ++ + DT +++KH+ IVC R++ GA L
Sbjct:   65 PLAHLDTLMEESYKRLLELANQVEGVQKRLKLAANALSCTTYLILMLIRYRFGLDDKNYDMLEAHFCPQV---NDC-------------------AEQGWEEIVDASMTYLLRTVLAKNVKETAVVQQSVSMPS-DTTKMRKHISIVCDRLNKGARL 198          
BLAST of mRNA_P-wetherbeei_contig7251.1.1 vs. uniprot
Match: A0A7S2WDC7_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WDC7_9STRA)

HSP 1 Score: 95.1 bits (235), Expect = 9.860e-20
Identity = 64/160 (40.00%), Postives = 92/160 (57.50%), Query Frame = 1
Query:    1 PLDCMDVLLEETYARLAELADRVAVAQRRLARSRAALACTVRVIALLLRCRFSLGDAEHASLVAHLQPDVADDDDCYGGNGSGNGGVEXXXXVDGSGIGWEESVDAAMTHLLRTALAKSAKDEGAAAPAATVAAPDTNRLKKHLGIVCARISAGACLVSG 480
            PL  +D +L ET+ ++ EL  RV  AQRRL R+  AL+CT  ++ LL++  F+LG+ +   L   L P V D+ D                       GWEE VDAA+THLL+T+LAK+AK+    A   ++   DT++LK+H+ IVC R++ GA L SG
Sbjct:  564 PLAQLDEVLSETHQQIVELGHRVEEAQRRLKRAANALSCTTGLVLLLIQFCFALGEEDMEVLRTFLTPQVQDNVD----------------------QGWEEQVDAALTHLLKTSLAKTAKEASMLAQPLSMPR-DTSKLKRHITIVCDRLAKGAMLASG 700          
BLAST of mRNA_P-wetherbeei_contig7251.1.1 vs. uniprot
Match: A0A6A5AHR9_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A6A5AHR9_9STRA)

HSP 1 Score: 92.4 bits (228), Expect = 5.860e-19
Identity = 64/163 (39.26%), Postives = 87/163 (53.37%), Query Frame = 1
Query:    1 PLDCMDVLLEETYARLAELADRVAVAQRRLARSRAALACTVRVIALLLRCRFSLGDAEHASLVAHLQPDVADDDDCYGGNGSGNGGVEXXXXVDGSGIGWEESVDAAMTHLLRTALAKSAKDEGAAA--PAATVAAPDTNRLKKHLGIVCARISAGACLVSGS 483
            PL+C+D+LL  TY++L +L+ RV   Q ++  S   LAC+V ++ +L+R +F L D   A L AHL P VAD                           WEES + AMT LL+TALA   ++  A A  P   V   DT +LKKH+ IVC R+S G  LV G+
Sbjct:  280 PLNCLDMLLHGTYSQLLDLSRRVDHVQGKVHVSANRLACSVHLLLMLIRYKFDLDDDNFAVLSAHLSPRVAD--------------------------AWEESTETAMTDLLKTALAVKKENAAAVAGVPVELVLPEDTKKLKKHITIVCDRLSKGGRLVGGA 416          
BLAST of mRNA_P-wetherbeei_contig7251.1.1 vs. uniprot
Match: A0A383VDZ0_TETOB (Uncharacterized protein n=1 Tax=Tetradesmus obliquus TaxID=3088 RepID=A0A383VDZ0_TETOB)

HSP 1 Score: 92.8 bits (229), Expect = 6.550e-19
Identity = 66/161 (40.99%), Postives = 89/161 (55.28%), Query Frame = 1
Query:    1 PLDCMDVLLEETYARLAELADRVAVAQRRLARSRAALACTVRVIALLLRCRFSLGDAEHASLVAHLQPDVADDDDCYGGNGSGNGGVEXXXXVDGSGIGWEESVDAAMTHLLRTALAKSAKDEGAAAPAATVAAPDTNRLKKHLGIVCARISAGACLVSGS 483
            PL+ +DVL+EETY ++ +LA ++   Q  L  +  AL   V+++ LL R RF L   E   L   L P V                      ++G  + WEE+ +AAMTHLLR+ALA+SAKD  AA P    AA DT RLKKH+ +V  R+S G  LV+GS
Sbjct:  770 PLNQLDVLMEETYDQILDLATQMEQLQAELLAAGQALGAGVQLLLLLTRFRFKLAAEESELLRCALSPVV----------------------LEGPEVSWEETTEAAMTHLLRSALARSAKDAAAAVPPLAPAA-DTARLKKHISLVLERLSKGMRLVAGS 907          
BLAST of mRNA_P-wetherbeei_contig7251.1.1 vs. uniprot
Match: A0A397FEJ0_9STRA (Uncharacterized protein n=9 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A397FEJ0_9STRA)

HSP 1 Score: 92.4 bits (228), Expect = 8.390e-19
Identity = 64/164 (39.02%), Postives = 87/164 (53.05%), Query Frame = 1
Query:    1 PLDCMDVLLEETYARLAELADRVAVAQRRLARSRAALACTVRVIALLLRCRFSLGDAEHASLVAHLQPDVADDDDCYGGNGSGNGGVEXXXXVDGSGIGWEESVDAAMTHLLRTALAKSAKDEGAAA---PAATVAAPDTNRLKKHLGIVCARISAGACLVSGS 483
            PL+C+D+LL  TY++L +L+ RV   Q ++  S   LAC+V ++ +L+R +F L D   A L AHL P VAD                           WEES + AMT LL+TALA   ++  A A   P   V   DT +LKKH+ IVC R+S G  LV G+
Sbjct:  466 PLNCLDMLLHGTYSQLLDLSRRVDHVQSKVHVSANRLACSVHLLLMLIRYKFDLDDDNFAVLSAHLSPRVAD--------------------------AWEESTETAMTDLLKTALAVKKENAAAVAVGVPVELVLPEDTKKLKKHITIVCDRLSKGGRLVGGA 603          
BLAST of mRNA_P-wetherbeei_contig7251.1.1 vs. uniprot
Match: A0A8J4CF38_9CHLO (Uncharacterized protein n=3 Tax=Volvox TaxID=3066 RepID=A0A8J4CF38_9CHLO)

HSP 1 Score: 91.3 bits (225), Expect = 2.280e-18
Identity = 63/159 (39.62%), Postives = 91/159 (57.23%), Query Frame = 1
Query:    1 PLDCMDVLLEETYARLAELADRVAVAQRRLA-RSRAALACTVRVIALLLRCRFSLGDAEHASLVAHLQPDVADDDDCYGGNGSGNGGVEXXXXVDGSGIGWEESVDAAMTHLLRTALAKSAKDEGAAAPAATVAAPDTNRLKKHLGIVCARISAGACLV 474
            PL+ +D+L++ETY  + +L   +  AQ  LA RSR    C V+++ LL+R RF+L +AE   L A + P +                      +DGS IGWEE+ +AAMTHLLRT LAKSAK++       + AA DT RL+KH+ +V  R++ G  L+
Sbjct:  752 PLNQLDLLMDETYDSIMDLGSAMEAAQTELAVRSRQLSGC-VQLLLLLVRWRFALNEAEFTVLKASISPQI----------------------IDGSEIGWEETTEAAMTHLLRTCLAKSAKEQAVQVTPLS-AAKDTQRLRKHISLVLERMARGMRLL 886          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig7251.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5K7J4_9PHAE2.070e-2649.69Fructose-bisphosphatase n=1 Tax=Ectocarpus sp. CCA... [more]
D8LTW5_ECTSI8.190e-2548.47Bardet-Biedl syndrome 9, parathyroid hormone-respo... [more]
A0A7S2G715_9STRA1.350e-2140.25Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A7S3YME0_HETAK1.920e-2143.51Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A7S2UYB3_9STRA4.570e-2039.49Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A7S2WDC7_9STRA9.860e-2040.00Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A6A5AHR9_9STRA5.860e-1939.26Uncharacterized protein (Fragment) n=1 Tax=Aphanom... [more]
A0A383VDZ0_TETOB6.550e-1940.99Uncharacterized protein n=1 Tax=Tetradesmus obliqu... [more]
A0A397FEJ0_9STRA8.390e-1939.02Uncharacterized protein n=9 Tax=Aphanomyces astaci... [more]
A0A8J4CF38_9CHLO2.280e-1839.62Uncharacterized protein n=3 Tax=Volvox TaxID=3066 ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig7251contigP-wetherbeei_contig7251:2..484 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog2880.D8LTW5
Preferred nameBBS9
PFAMsPHTB1_C,PHTB1_N
Model size483
Max annot lvl2759|Eukaryota
KEGG koko:K19398
Hectar predicted targeting categoryother localisation
GOsGO:0000242,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005813,GO:0005815,GO:0005829,GO:0005856,GO:0005886,GO:0005929,GO:0006996,GO:0008104,GO:0008150,GO:0009987,GO:0015630,GO:0016020,GO:0016043,GO:0022607,GO:0030030,GO:0030031,GO:0030154,GO:0031090,GO:0031253,GO:0032502,GO:0032991,GO:0033036,GO:0033365,GO:0034451,GO:0034464,GO:0034613,GO:0035869,GO:0036064,GO:0042995,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043232,GO:0044085,GO:0044422,GO:0044424,GO:0044425,GO:0044430,GO:0044441,GO:0044444,GO:0044446,GO:0044450,GO:0044459,GO:0044463,GO:0044464,GO:0044782,GO:0045444,GO:0048869,GO:0051179,GO:0051641,GO:0060170,GO:0060271,GO:0061512,GO:0070727,GO:0070925,GO:0071840,GO:0071944,GO:0098588,GO:0098590,GO:0120025,GO:0120031,GO:0120036,GO:0120038
Exons1
Evalue1.21e-23
EggNOG OGsKOG3679@1|root,KOG3679@2759|Eukaryota
Descriptioncell projection organization
Cds size471
COG categoryJM
BRITEko00000,ko03036
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186968.2687783-UTR-P-wetherbeei_contig7251:1..131683186968.2687783-UTR-P-wetherbeei_contig7251:1..13Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig7251 2..13 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186968.2789621-CDS-P-wetherbeei_contig7251:13..4841683186968.2789621-CDS-P-wetherbeei_contig7251:13..484Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig7251 14..484 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig7251.1.1prot_P-wetherbeei_contig7251.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig7251 14..484 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig7251.1.1

>prot_P-wetherbeei_contig7251.1.1 ID=prot_P-wetherbeei_contig7251.1.1|Name=mRNA_P-wetherbeei_contig7251.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=157bp
MDVLLEETYARLAELADRVAVAQRRLARSRAALACTVRVIALLLRCRFSL
GDAEHASLVAHLQPDVADDDDCYGGNGSGNGGVEGGGGVDGSGIGWEESV
DAAMTHLLRTALAKSAKDEGAAAPAATVAAPDTNRLKKHLGIVCARISAG
ACLVSGS
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mRNA from alignment at P-wetherbeei_contig7251:2..484+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig7251.1.1 ID=mRNA_P-wetherbeei_contig7251.1.1|Name=mRNA_P-wetherbeei_contig7251.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=483bp|location=Sequence derived from alignment at P-wetherbeei_contig7251:2..484+ (Phaeothamnion wetherbeei SAG_119_79)
CCACTCGACTGCATGGATGTTTTGCTGGAGGAAACATACGCCCGGCTGGC GGAGCTGGCTGACCGGGTGGCGGTGGCGCAACGGCGGCTGGCCCGGTCGC GGGCGGCGCTGGCATGCACAGTGCGCGTCATAGCGCTGCTGCTGCGCTGC CGCTTCAGCCTCGGCGACGCCGAGCACGCCTCGCTCGTCGCCCACCTGCA GCCCGACGTCGCCGACGACGACGACTGTTACGGCGGTAACGGCAGCGGTA ACGGCGGTGTTGAGGGCGGCGGCGGCGTGGACGGCAGTGGCATTGGATGG GAGGAGAGCGTCGACGCGGCGATGACGCACTTGCTGCGGACGGCACTCGC CAAGTCAGCAAAGGATGAGGGAGCGGCGGCTCCGGCGGCGACGGTGGCGG CGCCAGACACCAATCGCTTGAAAAAGCATCTCGGCATTGTGTGCGCGCGG ATCAGCGCCGGAGCGTGCTTGGTGTCCGGCAGC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig7251:2..484+

>mRNA_P-wetherbeei_contig7251.1.1 ID=mRNA_P-wetherbeei_contig7251.1.1|Name=mRNA_P-wetherbeei_contig7251.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=471bp|location=Sequence derived from alignment at P-wetherbeei_contig7251:2..484+ (Phaeothamnion wetherbeei SAG_119_79)
ATGGATGTTTTGCTGGAGGAAACATACGCCCGGCTGGCGGAGCTGGCTGA
CCGGGTGGCGGTGGCGCAACGGCGGCTGGCCCGGTCGCGGGCGGCGCTGG
CATGCACAGTGCGCGTCATAGCGCTGCTGCTGCGCTGCCGCTTCAGCCTC
GGCGACGCCGAGCACGCCTCGCTCGTCGCCCACCTGCAGCCCGACGTCGC
CGACGACGACGACTGTTACGGCGGTAACGGCAGCGGTAACGGCGGTGTTG
AGGGCGGCGGCGGCGTGGACGGCAGTGGCATTGGATGGGAGGAGAGCGTC
GACGCGGCGATGACGCACTTGCTGCGGACGGCACTCGCCAAGTCAGCAAA
GGATGAGGGAGCGGCGGCTCCGGCGGCGACGGTGGCGGCGCCAGACACCA
ATCGCTTGAAAAAGCATCTCGGCATTGTGTGCGCGCGGATCAGCGCCGGA
GCGTGCTTGGTGTCCGGCAGC
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