mRNA_P-wetherbeei_contig7246.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79
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Overview
Homology
BLAST of mRNA_P-wetherbeei_contig7246.1.1 vs. uniprot
Match: A0A4D9D349_9STRA (Peptide deformylase n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9D349_9STRA) HSP 1 Score: 70.9 bits (172), Expect = 2.150e-10 Identity = 37/68 (54.41%), Postives = 44/68 (64.71%), Query Frame = 3
Query: 1293 MDEVDPGAVEGTDLRVLRYPHPALRAPNEPIDEFTPEVARLAREMFKVEQCSGSLLQFGFFGLGLVRP 1496
++EVDPG VEGTDLRVL+YP P LR N I EF PEVA LA++MFKV + G+GL P
Sbjct: 2 VEEVDPGEVEGTDLRVLKYPDPRLRGANAEITEFGPEVAALAKDMFKV--------MYAMNGVGLAAP 61
BLAST of mRNA_P-wetherbeei_contig7246.1.1 vs. uniprot
Match: W7U6W2_9STRA (Peptide deformylase n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7U6W2_9STRA) HSP 1 Score: 72.4 bits (176), Expect = 2.720e-10 Identity = 38/68 (55.88%), Postives = 45/68 (66.18%), Query Frame = 3
Query: 1293 MDEVDPGAVEGTDLRVLRYPHPALRAPNEPIDEFTPEVARLAREMFKVEQCSGSLLQFGFFGLGLVRP 1496
++EVDPG VEGTDLRVL+YP P LRA N I EF PEVA LA++MFKV + G+GL P
Sbjct: 85 VEEVDPGEVEGTDLRVLKYPDPRLRAANAEITEFGPEVAALAKDMFKV--------MYAMNGVGLAAP 144
BLAST of mRNA_P-wetherbeei_contig7246.1.1 vs. uniprot
Match: A0A7S1U5N0_9STRA (Peptide deformylase (Fragment) n=2 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1U5N0_9STRA) HSP 1 Score: 68.6 bits (166), Expect = 3.470e-10 Identity = 33/70 (47.14%), Postives = 45/70 (64.29%), Query Frame = 3
Query: 1287 AAMDEVDPGAVEGTDLRVLRYPHPALRAPNEPIDEFTPEVARLAREMFKVEQCSGSLLQFGFFGLGLVRP 1496
A DEVDPG V+GTDLR+++YPHPALRA N ++ F ++ + +REMFKV + G+GL P
Sbjct: 20 AHQDEVDPGKVDGTDLRIVKYPHPALRAENAEVEAFDEDLKKFSREMFKV--------MYAAQGVGLAAP 81
BLAST of mRNA_P-wetherbeei_contig7246.1.1 vs. uniprot
Match: A0A7S1U4W5_9STRA (Peptide deformylase n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1U4W5_9STRA) HSP 1 Score: 70.5 bits (171), Expect = 4.360e-10 Identity = 37/97 (38.14%), Postives = 54/97 (55.67%), Query Frame = 3
Query: 1287 AAMDEVDPGAVEGTDLRVLRYPHPALRAPNEPIDEFTPEVARLAREMFKVEQCSGSLLQFGFFGLGLVRPLSKSMEDYFIPAALIRVRRWVDGITLV 1577
A DEVDPG V+GTDLR+++YPHPALRA N ++ F ++ + +REMFKV + G+GL P + + R+W+ + LV
Sbjct: 20 AHQDEVDPGKVDGTDLRIVKYPHPALRAENAEVEAFDEDLKKFSREMFKV--------MYAAQGVGLAAPQVGVNKRLMVYNPEGDARKWLAEVVLV 108
BLAST of mRNA_P-wetherbeei_contig7246.1.1 vs. uniprot
Match: A0A7S1BIF6_9STRA (Peptide deformylase n=2 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1BIF6_9STRA) HSP 1 Score: 69.7 bits (169), Expect = 1.550e-9 Identity = 42/101 (41.58%), Postives = 57/101 (56.44%), Query Frame = 3
Query: 1293 MDEVDPGAVEGTDLRVLRYPHPALRAPNEPIDEFTPE------VARLAREMFKVEQCSGSLLQFGFFGLGLVRPLSKSMEDYFIPAALIRVRRWVDGITLV 1577
++EVDPG VEGTDLRVLRYPHPALRA N E +PE +A+LA+EMF L+ + G+GL P + + +W+D +T+V
Sbjct: 58 VEEVDPGVVEGTDLRVLRYPHPALRAENS---EISPEELKDGSIAKLAKEMF--------LVMYATQGVGLAAPQVGVNKKLMVYNPSGDKTKWLDEVTMV 147
BLAST of mRNA_P-wetherbeei_contig7246.1.1 vs. uniprot
Match: A0A7S1XTC7_9STRA (Peptide deformylase (Fragment) n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1XTC7_9STRA) HSP 1 Score: 70.5 bits (171), Expect = 1.980e-9 Identity = 37/97 (38.14%), Postives = 54/97 (55.67%), Query Frame = 3
Query: 1287 AAMDEVDPGAVEGTDLRVLRYPHPALRAPNEPIDEFTPEVARLAREMFKVEQCSGSLLQFGFFGLGLVRPLSKSMEDYFIPAALIRVRRWVDGITLV 1577
A DEVDPG V+GTDLR+++YPHPALRA N ++ F ++ + +REMFKV + G+GL P + + R+W+ + LV
Sbjct: 20 AHQDEVDPGKVDGTDLRIVKYPHPALRAENAEVEAFDEDLKKFSREMFKV--------MYAAQGVGLAAPQVGVNKRLMVYNPEGDARKWLAEVVLV 108
BLAST of mRNA_P-wetherbeei_contig7246.1.1 vs. uniprot
Match: A0A7S4PNI0_GUITH (Peptide deformylase n=1 Tax=Guillardia theta TaxID=55529 RepID=A0A7S4PNI0_GUITH) HSP 1 Score: 69.7 bits (169), Expect = 2.450e-9 Identity = 37/101 (36.63%), Postives = 55/101 (54.46%), Query Frame = 3
Query: 1275 SPARAAMDEVDPGAVEGTDLRVLRYPHPALRAPNEPIDEFTPEVARLAREMFKVEQCSGSLLQFGFFGLGLVRPLSKSMEDYFIPAALIRVRRWVDGITLV 1577
+PA +EVDPG +EGTDLRVL+YPHP LRAP+E + EF + + +EMF L+ + G+GL P + + ++W+ I L+
Sbjct: 77 APAEPMEEEVDPGEIEGTDLRVLKYPHPKLRAPDEEVTEFDDNLRKTIKEMF--------LVMYASRGVGLAAPQVGINKRIMVFNPEGDKKKWLQEIALI 169
BLAST of mRNA_P-wetherbeei_contig7246.1.1 vs. uniprot
Match: R7QRS0_CHOCR (Peptide deformylase n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QRS0_CHOCR) HSP 1 Score: 68.2 bits (165), Expect = 5.950e-9 Identity = 37/72 (51.39%), Postives = 46/72 (63.89%), Query Frame = 3
Query: 1287 AAMDEVDPGAVEGTDLRVLRYPHPALRAPNE--PIDEFTPEVARLAREMFKVEQCSGSLLQFGFFGLGLVRP 1496
A EVDPG V+GTDLRVLRYPHP LRAPN ++EFT E+ R+A+EM L+ + G+GL P
Sbjct: 60 AVETEVDPGKVKGTDLRVLRYPHPLLRAPNAIVEVEEFTDELKRIAKEML--------LVMYASRGVGLAAP 123
BLAST of mRNA_P-wetherbeei_contig7246.1.1 vs. uniprot
Match: A0A0M0J6Q3_9EUKA (Peptide deformylase n=1 Tax=Chrysochromulina tobinii TaxID=1460289 RepID=A0A0M0J6Q3_9EUKA) HSP 1 Score: 67.0 bits (162), Expect = 9.140e-9 Identity = 33/71 (46.48%), Postives = 44/71 (61.97%), Query Frame = 3
Query: 1284 RAAMDEVDPGAVEGTDLRVLRYPHPALRAPNEPIDEFTPEVARLAREMFKVEQCSGSLLQFGFFGLGLVRP 1496
R + DE++PGAV GT+LR+L YPHP LRAPN + EF E+ +L +EMF + S G+GL P
Sbjct: 32 RLSADEINPGAVAGTNLRILEYPHPLLRAPNADVTEFDDELKQLTKEMFDIMYASR--------GVGLAAP 94
BLAST of mRNA_P-wetherbeei_contig7246.1.1 vs. uniprot
Match: A0A7S3V6U4_9STRA (Peptide deformylase n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3V6U4_9STRA) HSP 1 Score: 67.0 bits (162), Expect = 1.170e-8 Identity = 38/85 (44.71%), Postives = 55/85 (64.71%), Query Frame = 3
Query: 1284 RAAMDEVDPGAVEGTDLRVLRYPHPALRAPNEPIDEF---TPEVARLAREMFKVEQCSGSLLQFGFFGLGLVRP---LSKSMEDY 1520
++A++EVDPG VEGTDLRVL+YPHP+LRA N I E + E++++A+EMF L+ + G+GL P ++K M Y
Sbjct: 50 QSAVEEVDPGVVEGTDLRVLKYPHPSLRAANAEITEEELKSGEISKIAKEMF--------LVMYATQGVGLAAPQVGINKKMMVY 126 The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig7246.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-wetherbeei_contig7246.1.1 >prot_P-wetherbeei_contig7246.1.1 ID=prot_P-wetherbeei_contig7246.1.1|Name=mRNA_P-wetherbeei_contig7246.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=185bp MILRHAVAVMAGAATAAAFRLPVRASLHLKARVTTASRVRPRPGTILLRCback to top mRNA from alignment at P-wetherbeei_contig7246:2..2733+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-wetherbeei_contig7246.1.1 ID=mRNA_P-wetherbeei_contig7246.1.1|Name=mRNA_P-wetherbeei_contig7246.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=2732bp|location=Sequence derived from alignment at P-wetherbeei_contig7246:2..2733+ (Phaeothamnion wetherbeei SAG_119_79)back to top Coding sequence (CDS) from alignment at P-wetherbeei_contig7246:2..2733+ >mRNA_P-wetherbeei_contig7246.1.1 ID=mRNA_P-wetherbeei_contig7246.1.1|Name=mRNA_P-wetherbeei_contig7246.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=555bp|location=Sequence derived from alignment at P-wetherbeei_contig7246:2..2733+ (Phaeothamnion wetherbeei SAG_119_79)back to top |