mRNA_P-wetherbeei_contig7235.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig7235.1.1
Unique NamemRNA_P-wetherbeei_contig7235.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig7235.1.1 vs. uniprot
Match: A0A835YIU6_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YIU6_9STRA)

HSP 1 Score: 149 bits (377), Expect = 1.340e-39
Identity = 76/113 (67.26%), Postives = 92/113 (81.42%), Query Frame = 1
Query:    1 HEALAASRSEAYVYVPVDERHFAALDQHAETIEVDSKLPLVLVGEPGTGKNALLSNWVKRRAAAGSAAGKRNDEFLFLYFAGASTRAKRLAHMLHKLESSLKAVYQLREMEVP 339
            HEA AASRS  YVYVP+++ +FA LD+HA+TIE+D K PLV+VGEPG GKNALLSNW K+RAAA     +  DEF+F YFAGAST A+RL+HMLH LE++LK  +QLREMEVP
Sbjct:   30 HEAFAASRSSDYVYVPINDNYFATLDRHADTIEMDVKPPLVVVGEPGIGKNALLSNWEKQRAAA-----RHKDEFVFKYFAGASTAAQRLSHMLHSLETALKQFFQLREMEVP 137          
BLAST of mRNA_P-wetherbeei_contig7235.1.1 vs. uniprot
Match: A0A7S1U833_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1U833_9STRA)

HSP 1 Score: 129 bits (323), Expect = 2.530e-32
Identity = 66/113 (58.41%), Postives = 85/113 (75.22%), Query Frame = 1
Query:    1 HEALAASRSEAYVYVPVDERHFAALDQHAETIEVDSKLPLVLVGEPGTGKNALLSNWVKRRAAAGSAAGKRNDEFLFLYFAGASTRAKRLAHMLHKLESSLKAVYQLREMEVP 339
            HEA AASRS  +VYVP D+ +F  LD HAET+E D+KLPLV++G+PG+GK+ALL+NWVK R        +  DEFLF +F G S ++K+L  MLH+LES+LK  +QLREMEVP
Sbjct:   18 HEAFAASRSLDFVYVPSDDTYFRKLDAHAETVENDAKLPLVVLGDPGSGKSALLANWVKDRRRQ-----RHKDEFLFQHFVGCSIKSKQLGQMLHRLESALKEHFQLREMEVP 125          
BLAST of mRNA_P-wetherbeei_contig7235.1.1 vs. uniprot
Match: F0YI16_AURAN (NACHT domain-containing protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YI16_AURAN)

HSP 1 Score: 125 bits (313), Expect = 5.730e-31
Identity = 67/113 (59.29%), Postives = 81/113 (71.68%), Query Frame = 1
Query:    1 HEALAASRSEAYVYVPVDERHFAALDQHAETIEVDSKLPLVLVGEPGTGKNALLSNWVKRRAAAGSAAGKRNDEFLFLYFAGASTRAKRLAHMLHKLESSLKAVYQLREMEVP 339
            HEA AASRS  Y+Y   +E  F ALD HAETIE D+KLPLV+ G  G GK+ALL+NWV RR        K  DEFLF +F G S R+K+LAH+L++LES+LK  +QLREMEVP
Sbjct:   35 HEAFAASRSSDYIYESGNEAAFDALDSHAETIEGDAKLPLVITGSTGCGKSALLANWVNRRRKM-----KHRDEFLFQHFVGCSPRSKQLAHLLYRLESALKEHFQLREMEVP 142          
BLAST of mRNA_P-wetherbeei_contig7235.1.1 vs. uniprot
Match: A0A482STW6_9ARCH (Uncharacterized protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482STW6_9ARCH)

HSP 1 Score: 77.8 bits (190), Expect = 1.160e-16
Identity = 39/76 (51.32%), Postives = 51/76 (67.11%), Query Frame = 1
Query:   34 YVYVPVDERHFAALDQHAETIEVDSKLPLVLVGEPGTGKNALLSNWVKRRAAAGSAAGKRNDEFLFLYFAGASTRA 261
            YV+VP  + +F  LDQHA+T+E D K PLVL+G  G+GK+ALLSNWV  R        K  DEFLF +F G +T++
Sbjct:    4 YVFVPTKDVYFNTLDQHADTLEGDVKPPLVLIGNEGSGKSALLSNWVSHRREH-----KHRDEFLFQHFVGCTTQS 74          
BLAST of mRNA_P-wetherbeei_contig7235.1.1 vs. uniprot
Match: G4Z9Z3_PHYSP (Uncharacterized protein n=1 Tax=Phytophthora sojae (strain P6497) TaxID=1094619 RepID=G4Z9Z3_PHYSP)

HSP 1 Score: 65.9 bits (159), Expect = 8.890e-11
Identity = 45/114 (39.47%), Postives = 67/114 (58.77%), Query Frame = 1
Query:    1 HEALAASRSEAYVYVPVDERHFAALDQHAE-TIEVDSKLPLVLVGEPGTGKNALLSNWVKRRAAAGSAAGKRNDEFLFLYFAGASTRAKRLAHMLHKLESSLKAVYQLREMEVP 339
            H A A SR E +VY P    +F  L++H +   EV S L LV+VG+PG GK+ALL+NW + R    S  G+R  E ++ ++ G S  + +L+  L +  + LK  Y LR+ E+P
Sbjct:   58 HLAFAKSRKEDFVYAPTS-HYFHILNEHCQWDHEVRSAL-LVVVGQPGNGKSALLANWAEERRR--SVKGER--ELIYEHYCGCSYDSVKLSLFLFRFMNQLKISYSLRDFELP 165          
BLAST of mRNA_P-wetherbeei_contig7235.1.1 vs. uniprot
Match: A0A225VTG8_9STRA (Uncharacterized protein n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225VTG8_9STRA)

HSP 1 Score: 62.0 bits (149), Expect = 2.190e-9
Identity = 38/113 (33.63%), Postives = 59/113 (52.21%), Query Frame = 1
Query:    1 HEALAASRSEAYVYVPVDERHFAALDQHAETIEVDSKLPLVLVGEPGTGKNALLSNWVKRRAAAGSAAGKRNDEFLFLYFAGASTRAKRLAHMLHKLESSLKAVYQLREMEVP 339
            H A A SR E +VY P    +   L+ H +         LV+VG+PG GK+ALL+NW + R  +     K   E ++ ++ G S  + +L+  L +  + LK  Y LR+ E+P
Sbjct:   54 HHAFAKSRKEDFVYAPTS-HYLHILNDHCQWDHEARSPLLVVVGQPGDGKSALLANWAEERRCSI----KGGRELIYEHYCGCSYDSVKLSLFLFRFMNQLKISYNLRDFELP 161          
BLAST of mRNA_P-wetherbeei_contig7235.1.1 vs. uniprot
Match: W2RFM3_PHYPN (Uncharacterized protein n=7 Tax=Phytophthora TaxID=4783 RepID=W2RFM3_PHYPN)

HSP 1 Score: 63.5 bits (153), Expect = 2.220e-9
Identity = 41/114 (35.96%), Postives = 63/114 (55.26%), Query Frame = 1
Query:    1 HEALAASRSEAYVYVPVDERHFA-ALDQHAETIEVDSKLPLVLVGEPGTGKNALLSNWVKRRAAAGSAAGKRNDEFLFLYFAGASTRAKRLAHMLHKLESSLKAVYQLREMEVP 339
            H A A SR E +VY P   RH+   ++ H +         LV+VG+PG GK+ALL+NW + R    S  G+R  E ++ ++ G S  + +L+  L +  + LK  Y LR+ E+P
Sbjct:   59 HHAFAKSRKEDFVYAPT--RHYMHIMNDHCQWNHETRSALLVVVGQPGDGKSALLANWAEERRR--SIKGER--ELIYEHYCGCSYDSVKLSLFLFRFMNQLKISYSLRDFELP 166          
BLAST of mRNA_P-wetherbeei_contig7235.1.1 vs. uniprot
Match: W3A5X4_PHYPR (Uncharacterized protein n=1 Tax=Phytophthora parasitica P10297 TaxID=1317064 RepID=W3A5X4_PHYPR)

HSP 1 Score: 63.5 bits (153), Expect = 2.220e-9
Identity = 41/114 (35.96%), Postives = 63/114 (55.26%), Query Frame = 1
Query:    1 HEALAASRSEAYVYVPVDERHFA-ALDQHAETIEVDSKLPLVLVGEPGTGKNALLSNWVKRRAAAGSAAGKRNDEFLFLYFAGASTRAKRLAHMLHKLESSLKAVYQLREMEVP 339
            H A A SR E +VY P   RH+   ++ H +         LV+VG+PG GK+ALL+NW + R    S  G+R  E ++ ++ G S  + +L+  L +  + LK  Y LR+ E+P
Sbjct:   59 HHAFAKSRKEDFVYAPT--RHYMHIMNDHCQWNHETRSALLVVVGQPGDGKSALLANWAEERRR--SIKGER--ELIYEHYCGCSYDSVKLSLFLFRFMNQLKISYSLRDFELP 166          
BLAST of mRNA_P-wetherbeei_contig7235.1.1 vs. uniprot
Match: A0A0A6NZV3_9GAMM (Nephrocystin-3 n=1 Tax=Candidatus Thiomargarita nelsonii TaxID=1003181 RepID=A0A0A6NZV3_9GAMM)

HSP 1 Score: 59.7 bits (143), Expect = 4.820e-8
Identity = 41/113 (36.28%), Postives = 62/113 (54.87%), Query Frame = 1
Query:    1 HEALAASRSEAYVYVPVDERHFAALDQHAETIEVDSKLPLVLVGEPGTGKNALLSNWVKRRAAAGSAAGKRNDEFLFLYFAGASTRAKRLAHMLHKLESSLKAVYQLREMEVP 339
            HEA A SR++ Y+  P D      L++HA + +     PLV++GE G+GK+ALL+NW  R         +  D+ + LYF G+S  +     ML  + + LKA Y + E E+P
Sbjct:  234 HEAFADSRTKIYIERPAD---LQRLEEHAASEDK----PLVILGESGSGKSALLANWALRY--------RHPDDLVILYFIGSSPDSTDYVDMLRYVMARLKAHYHIDE-EIP 330          
BLAST of mRNA_P-wetherbeei_contig7235.1.1 vs. uniprot
Match: A0A482T4C4_9ARCH (ATP-binding protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482T4C4_9ARCH)

HSP 1 Score: 58.9 bits (141), Expect = 9.200e-8
Identity = 36/109 (33.03%), Postives = 58/109 (53.21%), Query Frame = 1
Query:    1 HEALAASR--SEAYVYVPVDERHFAALDQHAETIEVDSKLPLVLVGEPGTGKNALLSNWVKRRAAAGSAAGKRNDEFLFLYFAGASTRAKRLAHMLHKLESSLKAVYQL 321
            H+  A+ R   E +VY    E +    D   ++   D + P+++ GE GTGK ALL+NW++RR   G       DEF+F +  G S ++  +  ML +L + LK  ++L
Sbjct:   20 HKVFASIRVAGEEFVYCSSSELYSRLDDYCDDSAMSDMRPPVLIKGESGTGKTALLANWLQRREQLGIRMRSNADEFIFWHAVGCSRQSLNVNSMLRRLITDLKTKFEL 128          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig7235.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835YIU6_9STRA1.340e-3967.26Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S1U833_9STRA2.530e-3258.41Hypothetical protein n=1 Tax=Phaeomonas parva TaxI... [more]
F0YI16_AURAN5.730e-3159.29NACHT domain-containing protein n=1 Tax=Aureococcu... [more]
A0A482STW6_9ARCH1.160e-1651.32Uncharacterized protein n=1 Tax=archaeon TaxID=190... [more]
G4Z9Z3_PHYSP8.890e-1139.47Uncharacterized protein n=1 Tax=Phytophthora sojae... [more]
A0A225VTG8_9STRA2.190e-933.63Uncharacterized protein n=1 Tax=Phytophthora megak... [more]
W2RFM3_PHYPN2.220e-935.96Uncharacterized protein n=7 Tax=Phytophthora TaxID... [more]
W3A5X4_PHYPR2.220e-935.96Uncharacterized protein n=1 Tax=Phytophthora paras... [more]
A0A0A6NZV3_9GAMM4.820e-836.28Nephrocystin-3 n=1 Tax=Candidatus Thiomargarita ne... [more]
A0A482T4C4_9ARCH9.200e-833.03ATP-binding protein n=1 Tax=archaeon TaxID=1906665... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig7235contigP-wetherbeei_contig7235:2800..3138 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog44056.XP_009040146.1
Model size339
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons1
Evalue9.39e-32
EggNOG OGs29K1Z@1|root,2RTAV@2759|Eukaryota
Cds size339
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186967.3648357-CDS-P-wetherbeei_contig7235:2799..31381683186967.3648357-CDS-P-wetherbeei_contig7235:2799..3138Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig7235 2800..3138 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig7235.1.1prot_P-wetherbeei_contig7235.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig7235 2800..3138 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig7235.1.1

>prot_P-wetherbeei_contig7235.1.1 ID=prot_P-wetherbeei_contig7235.1.1|Name=mRNA_P-wetherbeei_contig7235.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=113bp
HEALAASRSEAYVYVPVDERHFAALDQHAETIEVDSKLPLVLVGEPGTGK
NALLSNWVKRRAAAGSAAGKRNDEFLFLYFAGASTRAKRLAHMLHKLESS
LKAVYQLREMEVP
back to top

mRNA from alignment at P-wetherbeei_contig7235:2800..3138+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig7235.1.1 ID=mRNA_P-wetherbeei_contig7235.1.1|Name=mRNA_P-wetherbeei_contig7235.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=339bp|location=Sequence derived from alignment at P-wetherbeei_contig7235:2800..3138+ (Phaeothamnion wetherbeei SAG_119_79)
CACGAAGCGCTGGCGGCGAGCCGGAGCGAGGCTTATGTTTATGTCCCGGT GGACGAGCGTCACTTTGCGGCGCTCGATCAGCATGCGGAGACGATTGAAG TGGACTCGAAACTGCCACTGGTGCTCGTGGGGGAGCCGGGCACTGGCAAG AACGCGCTGTTATCAAACTGGGTCAAGCGGCGCGCCGCGGCCGGCAGCGC CGCCGGCAAACGCAATGACGAGTTCCTCTTTCTCTACTTCGCGGGCGCAT CGACGCGCGCCAAGCGGCTCGCGCACATGCTCCACAAGCTCGAATCCTCG CTCAAAGCCGTTTACCAGCTGCGGGAGATGGAGGTGCCC
back to top

Coding sequence (CDS) from alignment at P-wetherbeei_contig7235:2800..3138+

>mRNA_P-wetherbeei_contig7235.1.1 ID=mRNA_P-wetherbeei_contig7235.1.1|Name=mRNA_P-wetherbeei_contig7235.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=339bp|location=Sequence derived from alignment at P-wetherbeei_contig7235:2800..3138+ (Phaeothamnion wetherbeei SAG_119_79)
CACGAAGCGCTGGCGGCGAGCCGGAGCGAGGCTTATGTTTATGTCCCGGT
GGACGAGCGTCACTTTGCGGCGCTCGATCAGCATGCGGAGACGATTGAAG
TGGACTCGAAACTGCCACTGGTGCTCGTGGGGGAGCCGGGCACTGGCAAG
AACGCGCTGTTATCAAACTGGGTCAAGCGGCGCGCCGCGGCCGGCAGCGC
CGCCGGCAAACGCAATGACGAGTTCCTCTTTCTCTACTTCGCGGGCGCAT
CGACGCGCGCCAAGCGGCTCGCGCACATGCTCCACAAGCTCGAATCCTCG
CTCAAAGCCGTTTACCAGCTGCGGGAGATGGAGGTGCCC
back to top