mRNA_P-wetherbeei_contig7213.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig7213.1.1
Unique NamemRNA_P-wetherbeei_contig7213.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig7213.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig7213contigP-wetherbeei_contig7213:432..1567 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1136
Hectar predicted targeting categoryother localisation
Exons1
Cds size879
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186966.2184525-UTR-P-wetherbeei_contig7213:431..6511683186966.2184525-UTR-P-wetherbeei_contig7213:431..651Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig7213 432..651 +
1683186966.2347457-UTR-P-wetherbeei_contig7213:1530..15671683186966.2347457-UTR-P-wetherbeei_contig7213:1530..1567Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig7213 1531..1567 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186966.2268-CDS-P-wetherbeei_contig7213:651..15301683186966.2268-CDS-P-wetherbeei_contig7213:651..1530Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig7213 652..1530 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig7213.1.1prot_P-wetherbeei_contig7213.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig7213 652..1530 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig7213.1.1

>prot_P-wetherbeei_contig7213.1.1 ID=prot_P-wetherbeei_contig7213.1.1|Name=mRNA_P-wetherbeei_contig7213.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=293bp
MAAQLATKRPWWYYVYAPKRKPGPWLGNTAEETVAAIQAQHADKRTIKQA
AHLDLLRQVKRAEDLACAHEAWKIFVRQGRITPTAGSAYLNKMVAFGERE
RALDIIVHRGSQLGANVSADAFNRLLAAMRTAGPEGGVKKAWTQAGAKPW
FRAVSGRTYKIVIRTLAEAGDHRAAINVAKRASREGKLSGGATPFVAESI
QALVADASAKAEVRAAAAAAAAAEGAAAAAAAAVERAAAEAEAAAERAAA
EAAPAAAVAEEESSVDEVLLAYERAPQAAGADAGTVPTPPAS*
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mRNA from alignment at P-wetherbeei_contig7213:432..1567+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig7213.1.1 ID=mRNA_P-wetherbeei_contig7213.1.1|Name=mRNA_P-wetherbeei_contig7213.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1136bp|location=Sequence derived from alignment at P-wetherbeei_contig7213:432..1567+ (Phaeothamnion wetherbeei SAG_119_79)
TTCCCTTCTGTTGTAGGATCAAAACCTATCTCTCTGGAGAGCTCTTGTGC
TTCGGGTCATCAATTCCTCCACTCGTTTCTTCTCAGAGGTAAAACCCGTG
CATTCCAATCTTGCTGCGATGTCGTTGGTGTAGACATCTACCATTCAAGG
ACTGCTCTTTGAATGTTTCCAGCCGCATTTGTCATGAGATATACTTTCCC
TCCTTCCCCCGCTCCAGCAGATGGCCGCCCAGCTAGCGACTAAGCGCCCT
TGGTGGTATTACGTCTACGCACCCAAGCGGAAACCAGGGCCGTGGCTGGG
AAATACAGCCGAGGAGACGGTCGCAGCGATCCAGGCGCAGCACGCGGACA
AGCGCACTATAAAGCAGGCGGCCCACCTCGACCTCCTCCGCCAGGTCAAG
CGGGCCGAGGATCTCGCATGCGCGCACGAGGCGTGGAAGATCTTTGTGCG
CCAGGGAAGGATCACACCGACCGCCGGCTCTGCCTATCTTAACAAAATGG
TTGCCTTCGGGGAGAGAGAACGGGCGCTCGATATTATCGTCCACAGGGGG
TCGCAGCTCGGCGCCAACGTCAGTGCCGACGCCTTCAACCGTCTTCTGGC
GGCGATGCGTACCGCCGGCCCCGAGGGCGGCGTCAAAAAGGCGTGGACGC
AGGCCGGCGCCAAGCCGTGGTTCCGCGCCGTCTCCGGCCGGACCTACAAG
ATCGTGATCCGGACACTGGCAGAGGCGGGCGACCACCGTGCCGCCATCAA
CGTAGCGAAGCGCGCGTCGCGGGAGGGGAAGCTGTCCGGGGGCGCCACGC
CGTTCGTGGCGGAATCCATCCAGGCGCTTGTCGCCGACGCCAGTGCGAAG
GCCGAGGTGCGGGCAGCGGCGGCAGCCGCTGCGGCAGCGGAAGGGGCGGC
TGCGGCGGCCGCCGCAGCGGTGGAGCGGGCGGCGGCGGAAGCCGAGGCGG
CGGCCGAGAGAGCCGCCGCTGAGGCAGCACCGGCGGCGGCGGTGGCGGAG
GAAGAGTCTTCCGTAGACGAAGTGTTGCTGGCATACGAACGGGCGCCCCA
AGCCGCTGGAGCAGATGCCGGTACCGTGCCGACGCCCCCAGCGTCTTGAA
AGACAAAAGGAAGCAGCAATTTTTTTGAAGATGGAC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig7213:432..1567+

>mRNA_P-wetherbeei_contig7213.1.1 ID=mRNA_P-wetherbeei_contig7213.1.1|Name=mRNA_P-wetherbeei_contig7213.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=879bp|location=Sequence derived from alignment at P-wetherbeei_contig7213:432..1567+ (Phaeothamnion wetherbeei SAG_119_79)
ATGGCCGCCCAGCTAGCGACTAAGCGCCCTTGGTGGTATTACGTCTACGC
ACCCAAGCGGAAACCAGGGCCGTGGCTGGGAAATACAGCCGAGGAGACGG
TCGCAGCGATCCAGGCGCAGCACGCGGACAAGCGCACTATAAAGCAGGCG
GCCCACCTCGACCTCCTCCGCCAGGTCAAGCGGGCCGAGGATCTCGCATG
CGCGCACGAGGCGTGGAAGATCTTTGTGCGCCAGGGAAGGATCACACCGA
CCGCCGGCTCTGCCTATCTTAACAAAATGGTTGCCTTCGGGGAGAGAGAA
CGGGCGCTCGATATTATCGTCCACAGGGGGTCGCAGCTCGGCGCCAACGT
CAGTGCCGACGCCTTCAACCGTCTTCTGGCGGCGATGCGTACCGCCGGCC
CCGAGGGCGGCGTCAAAAAGGCGTGGACGCAGGCCGGCGCCAAGCCGTGG
TTCCGCGCCGTCTCCGGCCGGACCTACAAGATCGTGATCCGGACACTGGC
AGAGGCGGGCGACCACCGTGCCGCCATCAACGTAGCGAAGCGCGCGTCGC
GGGAGGGGAAGCTGTCCGGGGGCGCCACGCCGTTCGTGGCGGAATCCATC
CAGGCGCTTGTCGCCGACGCCAGTGCGAAGGCCGAGGTGCGGGCAGCGGC
GGCAGCCGCTGCGGCAGCGGAAGGGGCGGCTGCGGCGGCCGCCGCAGCGG
TGGAGCGGGCGGCGGCGGAAGCCGAGGCGGCGGCCGAGAGAGCCGCCGCT
GAGGCAGCACCGGCGGCGGCGGTGGCGGAGGAAGAGTCTTCCGTAGACGA
AGTGTTGCTGGCATACGAACGGGCGCCCCAAGCCGCTGGAGCAGATGCCG
GTACCGTGCCGACGCCCCCAGCGTCTTGA
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