mRNA_P-wetherbeei_contig721.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig721.1.1
Unique NamemRNA_P-wetherbeei_contig721.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig721.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig721contigP-wetherbeei_contig721:331..2586 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size2256
Hectar predicted targeting categorysignal peptide
Exons1
Cds size1506
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186965.9884288-UTR-P-wetherbeei_contig721:330..5151683186965.9884288-UTR-P-wetherbeei_contig721:330..515Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig721 331..515 -
1683186966.0108984-UTR-P-wetherbeei_contig721:2021..25861683186966.0108984-UTR-P-wetherbeei_contig721:2021..2586Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig721 2022..2586 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186965.9999633-CDS-P-wetherbeei_contig721:515..20211683186965.9999633-CDS-P-wetherbeei_contig721:515..2021Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig721 516..2021 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig721.1.1prot_P-wetherbeei_contig721.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig721 516..2021 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig721.1.1

>prot_P-wetherbeei_contig721.1.1 ID=prot_P-wetherbeei_contig721.1.1|Name=mRNA_P-wetherbeei_contig721.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=502bp
MAERTDQIRMLAAPVVAAAAAAAAAAAASLSIVTEDLLRCVLLRCCVVKG
RQLLAEEARTSDTALAKILLGKLNTSCVAADTSQRLQAALASTAPVVAAI
AAESQQSARAIGAADVVPHNGAELDVLRAASPAKLDAASGERAANELQPH
RLRRGAELVEESHIEFTAAEMVSPAENIADDDGKSGGGSKRSASSAGDIN
SNGGESEEPSATNQVQFALMESSETPHMELVPAEAVSSAEIFIYPDDSGS
SGSRGRGSGRICSGGVEEAEPGLEDQVWQANSAVLALPIIPEDHIFELVE
RRYRQATRLAPPPSPPSYETDMENLRWAEEGINVSAPAGTQPGSAAPGVG
WAAPSNSSTAVREEAKMIANGKAEPAKGSRTAATAARARAALPETAATAH
ANAASAFKPAARPPEIDWRALRQGSAIHQLAQGRAAQQRGRSRAAAGFAE
SSQRPAASVADRSGEYGFYSRLSHEGRAVGIIPAANTRQVVIIFGAGRAG
H*
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mRNA from alignment at P-wetherbeei_contig721:331..2586-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig721.1.1 ID=mRNA_P-wetherbeei_contig721.1.1|Name=mRNA_P-wetherbeei_contig721.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=2256bp|location=Sequence derived from alignment at P-wetherbeei_contig721:331..2586- (Phaeothamnion wetherbeei SAG_119_79)
AGCACGAGTCACGAGCAGCTCGGAGAAATGACGTGGAGCTTGCGCGGGCG
AAGACGACGCAATACGCTCGGGCGGAGCAGGAACAGCAATGGGCGCAGCT
TGGTGCAGCCGTAGTCGGGGCGACTGTCGCTTTCGTGACCCTGCACGATG
CTGCACAGGCATGATAGCCGAAAAAGGGAAAGAAGGCAACCAAAAAACGA
GCAACAAAAGCTTTTACCCCTGAGCAAAATTGCACAGGCCATGCATCGTT
AATCCTCCGTCGCTCTACTTCGGTTATTATCCTCAAAACACCTCTTTTAT
TTAGCAAACCCCCTAATGCCAAAACCTGCAGGTGCTCGGAACCGCCGCAG
TGTCTACACTGGCTGCTCGTCATGACAGCGCATTCGGCGATGGCATCCGT
ATCATAGGAAGCGCGGTGGTCAACGGCGGCCGGCACCTTCGCAGCGCACT
GACGGCAGGCAGAACTGCTCTGCCCGACGGCAGCATCAGCAGCACAAGCA
GGAGCACTGACTGCAGCGCGGTGACTCGGAGGTTACAACCGGACCTTACG
GCGGCAGCGGACAACATGGCGGAAAGAACGGACCAAATACGGATGTTGGC
GGCACCGGTAGTAGCGGCAGCGGCTGCGGCGGCGGCAGCGGCGGCGGCGT
CGCTGTCGATCGTTACAGAAGACTTGCTTAGGTGCGTGCTCCTGCGCTGC
TGTGTGGTAAAGGGGCGGCAGCTGCTGGCAGAGGAAGCGCGCACCAGCGA
CACTGCGCTCGCAAAGATTCTACTCGGCAAGCTCAACACCAGCTGCGTCG
CCGCCGATACCTCTCAGAGGCTGCAGGCAGCGCTGGCCTCCACTGCGCCA
GTGGTGGCGGCGATAGCAGCAGAATCCCAGCAATCTGCTCGCGCCATCGG
CGCAGCGGACGTTGTTCCTCATAACGGTGCTGAACTGGACGTATTGCGGG
CCGCCAGCCCAGCAAAGCTTGATGCGGCGTCCGGCGAACGAGCGGCGAAC
GAGCTACAGCCTCATCGATTACGTCGCGGCGCAGAACTGGTAGAGGAGTC
GCACATTGAGTTCACCGCCGCTGAAATGGTATCGCCCGCGGAAAACATTG
CGGACGACGATGGGAAAAGTGGTGGTGGCAGCAAGAGGAGCGCCAGCAGC
GCCGGCGACATCAACAGCAACGGTGGGGAATCGGAGGAACCGAGCGCGAC
AAATCAAGTCCAATTTGCCTTGATGGAGAGTTCGGAGACGCCGCATATGG
AACTCGTTCCCGCTGAAGCAGTGTCATCCGCAGAAATTTTCATCTACCCA
GACGACAGCGGCAGCAGCGGCAGCAGAGGCCGCGGCAGCGGCCGGATCTG
CAGTGGTGGCGTTGAGGAGGCGGAGCCGGGATTGGAAGACCAAGTTTGGC
AGGCTAACTCCGCCGTATTAGCGCTTCCGATAATCCCGGAAGACCACATT
TTTGAATTGGTCGAACGTCGCTACCGTCAGGCGACGCGACTGGCTCCGCC
TCCCTCGCCTCCAAGCTACGAAACCGACATGGAGAATCTACGCTGGGCGG
AGGAAGGTATTAATGTTTCAGCACCCGCCGGCACACAGCCCGGAAGTGCC
GCTCCCGGCGTCGGTTGGGCGGCACCGTCAAATTCTTCGACAGCAGTGCG
GGAGGAGGCAAAGATGATTGCAAACGGCAAAGCCGAGCCGGCTAAAGGGT
CTCGGACTGCCGCAACTGCCGCGCGCGCACGGGCGGCCCTGCCCGAAACC
GCCGCTACGGCCCATGCCAATGCCGCTAGCGCTTTTAAGCCCGCAGCACG
TCCGCCAGAAATCGACTGGCGGGCGCTGCGACAAGGGAGCGCCATTCACC
AACTTGCCCAAGGCCGCGCCGCTCAGCAGAGAGGGCGGAGCAGGGCTGCC
GCTGGTTTTGCCGAGAGCTCGCAGCGGCCGGCGGCATCTGTCGCCGACCG
AAGCGGCGAGTACGGCTTCTACAGTCGATTGTCTCACGAAGGCAGGGCGG
TCGGCATCATTCCCGCGGCGAACACGAGGCAGGTGGTTATTATTTTTGGC
GCAGGAAGGGCTGGTCATTGAGGGCTGTCTCGTGTGAATGACAAAGTAAT
TGGAGCGGTTTGTGAAGAGGACAATGATCATTGCGGATCAGAAAGAGCGA
TCAGTGGTGTAAACAGGGGGGGAAGATTGGACAAAAAGTTATAACGCAAC
ATGAGAAAAAAGGAATATAAACAATGCACCGCCGTAAACATGGAACTTAA
CATGTC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig721:331..2586-

>mRNA_P-wetherbeei_contig721.1.1 ID=mRNA_P-wetherbeei_contig721.1.1|Name=mRNA_P-wetherbeei_contig721.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=1506bp|location=Sequence derived from alignment at P-wetherbeei_contig721:331..2586- (Phaeothamnion wetherbeei SAG_119_79)
ATGGCGGAAAGAACGGACCAAATACGGATGTTGGCGGCACCGGTAGTAGC
GGCAGCGGCTGCGGCGGCGGCAGCGGCGGCGGCGTCGCTGTCGATCGTTA
CAGAAGACTTGCTTAGGTGCGTGCTCCTGCGCTGCTGTGTGGTAAAGGGG
CGGCAGCTGCTGGCAGAGGAAGCGCGCACCAGCGACACTGCGCTCGCAAA
GATTCTACTCGGCAAGCTCAACACCAGCTGCGTCGCCGCCGATACCTCTC
AGAGGCTGCAGGCAGCGCTGGCCTCCACTGCGCCAGTGGTGGCGGCGATA
GCAGCAGAATCCCAGCAATCTGCTCGCGCCATCGGCGCAGCGGACGTTGT
TCCTCATAACGGTGCTGAACTGGACGTATTGCGGGCCGCCAGCCCAGCAA
AGCTTGATGCGGCGTCCGGCGAACGAGCGGCGAACGAGCTACAGCCTCAT
CGATTACGTCGCGGCGCAGAACTGGTAGAGGAGTCGCACATTGAGTTCAC
CGCCGCTGAAATGGTATCGCCCGCGGAAAACATTGCGGACGACGATGGGA
AAAGTGGTGGTGGCAGCAAGAGGAGCGCCAGCAGCGCCGGCGACATCAAC
AGCAACGGTGGGGAATCGGAGGAACCGAGCGCGACAAATCAAGTCCAATT
TGCCTTGATGGAGAGTTCGGAGACGCCGCATATGGAACTCGTTCCCGCTG
AAGCAGTGTCATCCGCAGAAATTTTCATCTACCCAGACGACAGCGGCAGC
AGCGGCAGCAGAGGCCGCGGCAGCGGCCGGATCTGCAGTGGTGGCGTTGA
GGAGGCGGAGCCGGGATTGGAAGACCAAGTTTGGCAGGCTAACTCCGCCG
TATTAGCGCTTCCGATAATCCCGGAAGACCACATTTTTGAATTGGTCGAA
CGTCGCTACCGTCAGGCGACGCGACTGGCTCCGCCTCCCTCGCCTCCAAG
CTACGAAACCGACATGGAGAATCTACGCTGGGCGGAGGAAGGTATTAATG
TTTCAGCACCCGCCGGCACACAGCCCGGAAGTGCCGCTCCCGGCGTCGGT
TGGGCGGCACCGTCAAATTCTTCGACAGCAGTGCGGGAGGAGGCAAAGAT
GATTGCAAACGGCAAAGCCGAGCCGGCTAAAGGGTCTCGGACTGCCGCAA
CTGCCGCGCGCGCACGGGCGGCCCTGCCCGAAACCGCCGCTACGGCCCAT
GCCAATGCCGCTAGCGCTTTTAAGCCCGCAGCACGTCCGCCAGAAATCGA
CTGGCGGGCGCTGCGACAAGGGAGCGCCATTCACCAACTTGCCCAAGGCC
GCGCCGCTCAGCAGAGAGGGCGGAGCAGGGCTGCCGCTGGTTTTGCCGAG
AGCTCGCAGCGGCCGGCGGCATCTGTCGCCGACCGAAGCGGCGAGTACGG
CTTCTACAGTCGATTGTCTCACGAAGGCAGGGCGGTCGGCATCATTCCCG
CGGCGAACACGAGGCAGGTGGTTATTATTTTTGGCGCAGGAAGGGCTGGT
CATTGA
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