mRNA_P-wetherbeei_contig7196.3.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig7196.3.1
Unique NamemRNA_P-wetherbeei_contig7196.3.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig7196.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig7196contigP-wetherbeei_contig7196:2391..3136 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size746
Hectar predicted targeting categoryother localisation
Exons1
Cds size504
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186964.48566-UTR-P-wetherbeei_contig7196:2390..25671683186964.48566-UTR-P-wetherbeei_contig7196:2390..2567Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig7196 2391..2567 +
1683186964.5040123-UTR-P-wetherbeei_contig7196:3071..31361683186964.5040123-UTR-P-wetherbeei_contig7196:3071..3136Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig7196 3072..3136 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186964.4946153-CDS-P-wetherbeei_contig7196:2567..30711683186964.4946153-CDS-P-wetherbeei_contig7196:2567..3071Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig7196 2568..3071 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig7196.3.1prot_P-wetherbeei_contig7196.3.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig7196 2568..3071 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig7196.3.1

>prot_P-wetherbeei_contig7196.3.1 ID=prot_P-wetherbeei_contig7196.3.1|Name=mRNA_P-wetherbeei_contig7196.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=168bp
MMRPPGTASLLDNIRGFVGPSSASESSRTGLAKGAISMTTKSKPRSRAAS
DVPHDATKLTSSTAGARKNEDELAASQESAANATAQQRDCISEVVQAKFD
GFLQRDMEAAMSGMSVTKEGRSSSGKVAVVAERRRARANGSPYQRASAKI
ADATATTGASGSREGIS*
back to top

mRNA from alignment at P-wetherbeei_contig7196:2391..3136+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig7196.3.1 ID=mRNA_P-wetherbeei_contig7196.3.1|Name=mRNA_P-wetherbeei_contig7196.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=746bp|location=Sequence derived from alignment at P-wetherbeei_contig7196:2391..3136+ (Phaeothamnion wetherbeei SAG_119_79)
TGAAAAATGAAAGAGAGACGCAGGCGCCACAGCCCCTACACCTGCTCTGG
GAAGGACTAAAATCCCTTTTCATTTCCTCTTCGTTGGTGAAAAAGGAGGA
GCAGGCCGAAGGTCGTTTCGCTGCCTCTCTCTTTCCGGAGTCTACCGCCT
ATCGCATCTCCCTAGAGTCGTGACGTCATGATGCGTCCACCGGGGACGGC
GTCTCTGCTGGACAATATACGCGGTTTCGTCGGGCCGAGCTCGGCCAGCG
AGTCGTCTAGAACTGGGTTGGCTAAAGGAGCGATATCGATGACCACGAAG
TCAAAACCGCGCTCACGTGCCGCGTCGGACGTCCCACACGACGCGACGAA
GTTGACTTCATCAACTGCTGGTGCCCGAAAGAACGAGGACGAGCTCGCTG
CGAGCCAGGAGAGCGCCGCCAATGCTACCGCGCAACAGCGCGACTGCATC
TCGGAGGTGGTTCAGGCGAAATTCGACGGCTTCCTGCAGCGCGACATGGA
GGCGGCGATGAGCGGGATGTCAGTGACAAAGGAGGGCCGATCTTCTTCTG
GGAAAGTGGCGGTGGTGGCCGAGCGGCGGAGAGCGCGTGCAAACGGCTCG
CCTTACCAGCGCGCGTCCGCCAAGATTGCCGACGCTACGGCCACCACTGG
CGCTAGTGGCAGCAGGGAAGGCATTTCTTAAAAGCGATGGACAGGTTTAC
GGGGGAGGTGGATCGGATGTGGGAAGCTCACAAAGGTTCAGGGGGG
back to top

Coding sequence (CDS) from alignment at P-wetherbeei_contig7196:2391..3136+

>mRNA_P-wetherbeei_contig7196.3.1 ID=mRNA_P-wetherbeei_contig7196.3.1|Name=mRNA_P-wetherbeei_contig7196.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=504bp|location=Sequence derived from alignment at P-wetherbeei_contig7196:2391..3136+ (Phaeothamnion wetherbeei SAG_119_79)
ATGATGCGTCCACCGGGGACGGCGTCTCTGCTGGACAATATACGCGGTTT
CGTCGGGCCGAGCTCGGCCAGCGAGTCGTCTAGAACTGGGTTGGCTAAAG
GAGCGATATCGATGACCACGAAGTCAAAACCGCGCTCACGTGCCGCGTCG
GACGTCCCACACGACGCGACGAAGTTGACTTCATCAACTGCTGGTGCCCG
AAAGAACGAGGACGAGCTCGCTGCGAGCCAGGAGAGCGCCGCCAATGCTA
CCGCGCAACAGCGCGACTGCATCTCGGAGGTGGTTCAGGCGAAATTCGAC
GGCTTCCTGCAGCGCGACATGGAGGCGGCGATGAGCGGGATGTCAGTGAC
AAAGGAGGGCCGATCTTCTTCTGGGAAAGTGGCGGTGGTGGCCGAGCGGC
GGAGAGCGCGTGCAAACGGCTCGCCTTACCAGCGCGCGTCCGCCAAGATT
GCCGACGCTACGGCCACCACTGGCGCTAGTGGCAGCAGGGAAGGCATTTC
TTAA
back to top