mRNA_P-wetherbeei_contig7184.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig7184.1.1
Unique NamemRNA_P-wetherbeei_contig7184.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig7184.1.1 vs. uniprot
Match: D7FVD3_ECTSI (Protein phosphatase 2A regulatory subunit n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FVD3_ECTSI)

HSP 1 Score: 76.3 bits (186), Expect = 5.480e-15
Identity = 34/45 (75.56%), Postives = 42/45 (93.33%), Query Frame = 1 
Query:    1 PLQLLQDDFSSSDQEVRLKAIKRVRIVAEVMGPDATRANLIPFIN 135
            PLQLLQDDF SSDQE+RLKA+KRV++VA+V+GP+ TR+ LIPFIN
Sbjct:    9 PLQLLQDDFESSDQEIRLKALKRVKLVADVLGPEVTRSELIPFIN 53
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BLAST of mRNA_P-wetherbeei_contig7184.1.1 vs. uniprot
Match: A0A836CRQ9_9STRA (Protein phosphatase 2A regulatory subunit n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CRQ9_9STRA)

HSP 1 Score: 65.1 bits (157), Expect = 4.680e-11
Identity = 29/44 (65.91%), Postives = 38/44 (86.36%), Query Frame = 1 
Query:    1 PLQLLQDDFSSSDQEVRLKAIKRVRIVAEVMGPDATRANLIPFI 132
            PLQLLQ DF+S+DQE+RL+AIKR R+VAEVMG +A R  L+P++
Sbjct:   11 PLQLLQGDFASTDQEIRLRAIKRARLVAEVMGAEAARDELVPYL 54
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BLAST of mRNA_P-wetherbeei_contig7184.1.1 vs. uniprot
Match: A0A4W5L613_9TELE (Uncharacterized protein n=1 Tax=Hucho hucho TaxID=62062 RepID=A0A4W5L613_9TELE)

HSP 1 Score: 50.1 bits (118), Expect = 8.080e-7
Identity = 18/46 (39.13%), Postives = 35/46 (76.09%), Query Frame = 1 
Query:    1 PLQLLQDDFSSSDQEVRLKAIKRVRIVAEVMGPDATRANLIPFINR 138
            P+ LL ++  + + E R+++++R+R VA+ +GPD TR+ L+PF++R
Sbjct:   22 PINLLTEEMRTDETETRIRSMRRLRTVAQALGPDRTRSELLPFLSR 67
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BLAST of mRNA_P-wetherbeei_contig7184.1.1 vs. uniprot
Match: A0A484E7S2_BRELC (Uncharacterized protein n=1 Tax=Bremia lactucae TaxID=4779 RepID=A0A484E7S2_BRELC)

HSP 1 Score: 50.8 bits (120), Expect = 5.000e-6
Identity = 20/47 (42.55%), Postives = 35/47 (74.47%), Query Frame = 1 
Query:    1 PLQLLQDDFSSSDQEVRLKAIKRVRIVAEVMGPDATRANLIPFINRE 141
            P+ LL+++  S +   R+KA++R+R VA+ +GPD TR++L+PF+  E
Sbjct:   11 PMTLLREELKSDEVGTRIKAMRRLRTVAQALGPDRTRSDLLPFLRAE 57
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BLAST of mRNA_P-wetherbeei_contig7184.1.1 vs. uniprot
Match: W2KR77_PHYPR (Uncharacterized protein n=27 Tax=Peronosporaceae TaxID=4777 RepID=W2KR77_PHYPR)

HSP 1 Score: 49.7 bits (117), Expect = 1.280e-5
Identity = 19/44 (43.18%), Postives = 34/44 (77.27%), Query Frame = 1 
Query:    1 PLQLLQDDFSSSDQEVRLKAIKRVRIVAEVMGPDATRANLIPFI 132
            P+ LL ++  S + E R+KA++R+R VA+ +GP+ TR++L+PF+
Sbjct:    7 PMTLLTEELKSDEVETRIKAMRRLRTVAQALGPERTRSDLLPFL 50
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BLAST of mRNA_P-wetherbeei_contig7184.1.1 vs. uniprot
Match: H3GD06_PHYRM (Uncharacterized protein n=17 Tax=Phytophthora TaxID=4783 RepID=H3GD06_PHYRM)

HSP 1 Score: 49.7 bits (117), Expect = 1.280e-5
Identity = 19/44 (43.18%), Postives = 34/44 (77.27%), Query Frame = 1 
Query:    1 PLQLLQDDFSSSDQEVRLKAIKRVRIVAEVMGPDATRANLIPFI 132
            P+ LL ++  S + E R+KA++R+R VA+ +GP+ TR++L+PF+
Sbjct:    7 PMTLLTEELKSDEVETRIKAMRRLRTVAQALGPERTRSDLLPFL 50
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BLAST of mRNA_P-wetherbeei_contig7184.1.1 vs. uniprot
Match: A0A024G4P1_9STRA (Glutamine--fructose-6-phosphate transaminase (isomerizing) n=1 Tax=Albugo candida TaxID=65357 RepID=A0A024G4P1_9STRA)

HSP 1 Score: 49.7 bits (117), Expect = 1.290e-5
Identity = 20/44 (45.45%), Postives = 33/44 (75.00%), Query Frame = 1 
Query:    1 PLQLLQDDFSSSDQEVRLKAIKRVRIVAEVMGPDATRANLIPFI 132
            PL+LL +D SS + E R+K++++++ VA+ +G D TR  LIPF+
Sbjct: 1703 PLKLLMEDMSSDEPETRIKSMRKLKTVAQALGHDRTRCELIPFL 1746
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BLAST of mRNA_P-wetherbeei_contig7184.1.1 vs. uniprot
Match: A0A067CSS0_SAPPC (Uncharacterized protein n=4 Tax=Saprolegniaceae TaxID=4764 RepID=A0A067CSS0_SAPPC)

HSP 1 Score: 48.5 bits (114), Expect = 3.280e-5
Identity = 17/46 (36.96%), Postives = 35/46 (76.09%), Query Frame = 1 
Query:    1 PLQLLQDDFSSSDQEVRLKAIKRVRIVAEVMGPDATRANLIPFINR 138
            P+ LL ++  + + E R+++++R+R VA+ +GPD TR+ L+PF+++
Sbjct:    7 PINLLTEEMRTDETETRIRSMRRLRTVAQALGPDRTRSELLPFLSQ 52
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BLAST of mRNA_P-wetherbeei_contig7184.1.1 vs. uniprot
Match: A0A3R7BAB6_9STRA (Uncharacterized protein n=2 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A3R7BAB6_9STRA)

HSP 1 Score: 48.1 bits (113), Expect = 4.410e-5
Identity = 16/45 (35.56%), Postives = 34/45 (75.56%), Query Frame = 1 
Query:    1 PLQLLQDDFSSSDQEVRLKAIKRVRIVAEVMGPDATRANLIPFIN 135
            P+ LL ++  + + E R+++++R+R +A+ +GP+ TR+ L+PF+N
Sbjct:   41 PINLLTEEMRTDETETRIRSMRRLRTIAQALGPERTRSELLPFLN 85
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BLAST of mRNA_P-wetherbeei_contig7184.1.1 vs. uniprot
Match: F0WD27_9STRA (Serine/threonineprotein phosphatase 2A 65 kDa regulatory subunit A putative n=1 Tax=Albugo laibachii Nc14 TaxID=890382 RepID=F0WD27_9STRA)

HSP 1 Score: 48.1 bits (113), Expect = 4.490e-5
Identity = 19/44 (43.18%), Postives = 32/44 (72.73%), Query Frame = 1 
Query:    1 PLQLLQDDFSSSDQEVRLKAIKRVRIVAEVMGPDATRANLIPFI 132
            PL+LL +D  S + E R+K++++++ VA+ +G D TR  LIPF+
Sbjct:    9 PLKLLMEDMKSDEAETRIKSMRKLKTVAQALGHDRTRCELIPFL 52
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig7184.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 14
Match NameE-valueIdentityDescription
D7FVD3_ECTSI5.480e-1575.56Protein phosphatase 2A regulatory subunit n=2 Tax=... [more]
A0A836CRQ9_9STRA4.680e-1165.91Protein phosphatase 2A regulatory subunit n=1 Tax=... [more]
A0A4W5L613_9TELE8.080e-739.13Uncharacterized protein n=1 Tax=Hucho hucho TaxID=... [more]
A0A484E7S2_BRELC5.000e-642.55Uncharacterized protein n=1 Tax=Bremia lactucae Ta... [more]
W2KR77_PHYPR1.280e-543.18Uncharacterized protein n=27 Tax=Peronosporaceae T... [more]
H3GD06_PHYRM1.280e-543.18Uncharacterized protein n=17 Tax=Phytophthora TaxI... [more]
A0A024G4P1_9STRA1.290e-545.45Glutamine--fructose-6-phosphate transaminase (isom... [more]
A0A067CSS0_SAPPC3.280e-536.96Uncharacterized protein n=4 Tax=Saprolegniaceae Ta... [more]
A0A3R7BAB6_9STRA4.410e-535.56Uncharacterized protein n=2 Tax=Aphanomyces astaci... [more]
F0WD27_9STRA4.490e-543.18Serine/threonineprotein phosphatase 2A 65 kDa regu... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig7184contigP-wetherbeei_contig7184:78..221 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog2880.D7FVD3
PFAMsHEAT
Model size144
Max annot lvl2759|Eukaryota
KEGG koko:K03456
KEGG Pathwayko03015,ko04071,ko04111,ko04113,ko04114,ko04151,ko04152,ko04261,ko04350,ko04390,ko04391,ko04530,ko04728,ko04730,ko05142,ko05160,ko05165,map03015,map04071,map04111,map04113,map04114,map04151,map04152,map04261,map04350,map04390,map04391,map04530,map04728,map04730,map05142,map05160,map05165
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Evalue8.98e-16
EggNOG OGsKOG0211@1|root,KOG0211@2759|Eukaryota
Descriptionmeiotic spindle elongation
Cds size144
COG categoryS
BRITEko00000,ko00001,ko01009,ko03036
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186964.0060754-CDS-P-wetherbeei_contig7184:77..2211683186964.0060754-CDS-P-wetherbeei_contig7184:77..221Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig7184 78..221 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig7184.1.1prot_P-wetherbeei_contig7184.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig7184 78..221 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig7184.1.1

>prot_P-wetherbeei_contig7184.1.1 ID=prot_P-wetherbeei_contig7184.1.1|Name=mRNA_P-wetherbeei_contig7184.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=48bp
PLQLLQDDFSSSDQEVRLKAIKRVRIVAEVMGPDATRANLIPFINRE*
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mRNA from alignment at P-wetherbeei_contig7184:78..221-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig7184.1.1 ID=mRNA_P-wetherbeei_contig7184.1.1|Name=mRNA_P-wetherbeei_contig7184.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=144bp|location=Sequence derived from alignment at P-wetherbeei_contig7184:78..221- (Phaeothamnion wetherbeei SAG_119_79)
CCTCTGCAGCTGCTGCAGGATGACTTCAGCAGCTCAGATCAGGAGGTTCG
CCTCAAGGCTATCAAACGCGTCAGAATAGTGGCAGAAGTAATGGGGCCGG
ATGCTACAAGGGCGAATCTCATTCCTTTCATCAACCGTGAGTGA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig7184:78..221-

>mRNA_P-wetherbeei_contig7184.1.1 ID=mRNA_P-wetherbeei_contig7184.1.1|Name=mRNA_P-wetherbeei_contig7184.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=144bp|location=Sequence derived from alignment at P-wetherbeei_contig7184:78..221- (Phaeothamnion wetherbeei SAG_119_79)
CCTCTGCAGCTGCTGCAGGATGACTTCAGCAGCTCAGATCAGGAGGTTCG
CCTCAAGGCTATCAAACGCGTCAGAATAGTGGCAGAAGTAATGGGGCCGG
ATGCTACAAGGGCGAATCTCATTCCTTTCATCAACCGTGAGTGA
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