mRNA_P-wetherbeei_contig7178.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig7178.1.1
Unique NamemRNA_P-wetherbeei_contig7178.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig7178.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig7178contigP-wetherbeei_contig7178:620..2042 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size1155
Hectar predicted targeting categorysignal peptide
Exons2
Cds size1089
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186963.5456846-UTR-P-wetherbeei_contig7178:619..6831683186963.5456846-UTR-P-wetherbeei_contig7178:619..683Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig7178 620..683 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186963.5554247-CDS-P-wetherbeei_contig7178:683..14721683186963.5554247-CDS-P-wetherbeei_contig7178:683..1472Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig7178 684..1472 +
1683186963.564427-CDS-P-wetherbeei_contig7178:1742..20421683186963.564427-CDS-P-wetherbeei_contig7178:1742..2042Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig7178 1743..2042 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig7178.1.1prot_P-wetherbeei_contig7178.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig7178 684..2042 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig7178.1.1

>prot_P-wetherbeei_contig7178.1.1 ID=prot_P-wetherbeei_contig7178.1.1|Name=mRNA_P-wetherbeei_contig7178.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=363bp
MLCSMVVLSGRFRLTPFLLTVDLSVGGIFPFRRFCRRYSYRCLRHRLCLR
PPGALTVSTRFPAVCRFPFLQEERDALRAELRGVCAAASTMDPSSAAATG
GAVAGSDDRTVAAAEGAAAAGTDAASSRRVPPSLSLEGRPGGGGGEDANA
GAEASSCGGRNAADAVAAAAGPAVAAEGHLPAASASEAVAQLLRPVTVSE
GRNGDRRLRFTSVGVSRRRSYSDHSGYDGDVRGGNGGGSGADERARDEDT
RLEELLMQLEDLQNAAQDGEEREQRVKHKADAAIRRLEALAAAPSIIAPP
PVPATALPGADVLLASNGGGNDREAAAAAREAATASLTATAAATATAAAT
IATLRNQLTEREW
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mRNA from alignment at P-wetherbeei_contig7178:620..2042+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig7178.1.1 ID=mRNA_P-wetherbeei_contig7178.1.1|Name=mRNA_P-wetherbeei_contig7178.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1423bp|location=Sequence derived from alignment at P-wetherbeei_contig7178:620..2042+ (Phaeothamnion wetherbeei SAG_119_79)
CACACTTTGGGCGAGAGCGGTCTTATGTGGACTAGTGGGCAGCGCAACTT
TGGTTATCTCTTAGATGTTATGTTCAATGGTAGTGCTTTCTGGCCGATTT
CGTTTAACGCCGTTTCTTTTGACCGTTGACTTGAGTGTAGGCGGCATTTT
CCCGTTCAGACGCTTTTGCCGCCGTTATAGCTATCGCTGCCTACGTCACC
GCCTCTGCCTGAGACCTCCCGGCGCCCTCACTGTTTCGACACGTTTCCCC
GCTGTCTGCCGATTCCCATTTTTACAGGAAGAGCGAGATGCTCTGAGAGC
CGAGCTACGCGGTGTGTGCGCTGCCGCCTCTACAATGGATCCGTCTTCGG
CAGCCGCCACTGGCGGCGCCGTTGCCGGCAGCGATGACCGCACCGTAGCG
GCAGCAGAGGGAGCAGCTGCCGCTGGCACTGACGCAGCCTCATCGCGTCG
CGTGCCGCCATCGCTGTCGCTGGAGGGGCGCCCAGGCGGCGGGGGTGGCG
AAGATGCGAACGCCGGTGCTGAAGCGTCCTCTTGCGGCGGACGCAATGCA
GCGGATGCGGTGGCGGCAGCGGCTGGGCCAGCTGTGGCGGCAGAGGGGCA
TTTGCCGGCCGCGAGCGCTTCAGAGGCGGTAGCACAGCTGCTTCGGCCCG
TCACAGTGTCGGAAGGGAGGAACGGCGATCGAAGACTGCGCTTTACCAGT
GTCGGCGTGAGCCGCCGCAGGAGTTACAGCGACCACAGCGGCTACGACGG
TGATGTCAGGGGTGGCAATGGCGGCGGCAGCGGCGCCGACGAACGGGCGA
GGGATGAAGACACGCGACTGGAGGAGCTCCTGATGCAGCTCGAAGACCTT
CAGGTGATTGGCGGAGAGGTTTCGGCTTCCTTGCCTGGCTCTATAGTTCC
ATAAAAGCCTCTGTTTACGCCCTTTATCCACGGATCTTTGTTCCAGTCAT
TCAGAATGCCGATCCGGCACAACCGTCCGCTCAGTTTTTCCACGAGTCCT
TGTTCCAGCCCCTTCAGAATCTCGGTCCAGCACAGCAGTAACGCCTTCAT
CCCGTCCGAAAGCCCCTCTCATCTTTTTCAGCTATTTTCCCTCCGAACCG
CTGTTTTTTCCTTCTGCGCACAGAACGCCGCCCAGGACGGCGAGGAGCGA
GAGCAGCGCGTAAAGCACAAGGCAGATGCCGCCATCCGCCGCCTCGAAGC
GCTGGCGGCCGCCCCATCCATTATCGCTCCGCCGCCGGTGCCGGCTACAG
CCTTGCCAGGCGCAGACGTCCTGTTAGCATCAAATGGCGGCGGCAACGAT
AGAGAAGCGGCAGCGGCGGCTAGAGAGGCGGCGACGGCCTCGTTGACGGC
CACAGCGGCGGCGACGGCGACCGCCGCTGCGACAATCGCGACCCTGCGGA
ACCAGCTGACGGAGCGGGAATGG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig7178:620..2042+

>mRNA_P-wetherbeei_contig7178.1.1 ID=mRNA_P-wetherbeei_contig7178.1.1|Name=mRNA_P-wetherbeei_contig7178.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=1089bp|location=Sequence derived from alignment at P-wetherbeei_contig7178:620..2042+ (Phaeothamnion wetherbeei SAG_119_79)
ATGTTATGTTCAATGGTAGTGCTTTCTGGCCGATTTCGTTTAACGCCGTT
TCTTTTGACCGTTGACTTGAGTGTAGGCGGCATTTTCCCGTTCAGACGCT
TTTGCCGCCGTTATAGCTATCGCTGCCTACGTCACCGCCTCTGCCTGAGA
CCTCCCGGCGCCCTCACTGTTTCGACACGTTTCCCCGCTGTCTGCCGATT
CCCATTTTTACAGGAAGAGCGAGATGCTCTGAGAGCCGAGCTACGCGGTG
TGTGCGCTGCCGCCTCTACAATGGATCCGTCTTCGGCAGCCGCCACTGGC
GGCGCCGTTGCCGGCAGCGATGACCGCACCGTAGCGGCAGCAGAGGGAGC
AGCTGCCGCTGGCACTGACGCAGCCTCATCGCGTCGCGTGCCGCCATCGC
TGTCGCTGGAGGGGCGCCCAGGCGGCGGGGGTGGCGAAGATGCGAACGCC
GGTGCTGAAGCGTCCTCTTGCGGCGGACGCAATGCAGCGGATGCGGTGGC
GGCAGCGGCTGGGCCAGCTGTGGCGGCAGAGGGGCATTTGCCGGCCGCGA
GCGCTTCAGAGGCGGTAGCACAGCTGCTTCGGCCCGTCACAGTGTCGGAA
GGGAGGAACGGCGATCGAAGACTGCGCTTTACCAGTGTCGGCGTGAGCCG
CCGCAGGAGTTACAGCGACCACAGCGGCTACGACGGTGATGTCAGGGGTG
GCAATGGCGGCGGCAGCGGCGCCGACGAACGGGCGAGGGATGAAGACACG
CGACTGGAGGAGCTCCTGATGCAGCTCGAAGACCTTCAGAACGCCGCCCA
GGACGGCGAGGAGCGAGAGCAGCGCGTAAAGCACAAGGCAGATGCCGCCA
TCCGCCGCCTCGAAGCGCTGGCGGCCGCCCCATCCATTATCGCTCCGCCG
CCGGTGCCGGCTACAGCCTTGCCAGGCGCAGACGTCCTGTTAGCATCAAA
TGGCGGCGGCAACGATAGAGAAGCGGCAGCGGCGGCTAGAGAGGCGGCGA
CGGCCTCGTTGACGGCCACAGCGGCGGCGACGGCGACCGCCGCTGCGACA
ATCGCGACCCTGCGGAACCAGCTGACGGAGCGGGAATGG
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