mRNA_P-wetherbeei_contig7177.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig7177.1.1
Unique NamemRNA_P-wetherbeei_contig7177.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig7177.1.1 vs. uniprot
Match: A0A6H5KP74_9PHAE (PHB domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KP74_9PHAE)

HSP 1 Score: 130 bits (326), Expect = 2.420e-36
Identity = 64/80 (80.00%), Postives = 72/80 (90.00%), Query Frame = 1
Query:    1 GVARQRKAIVEGLRDSIHDFSASIHGTTAKDVMDLLLLTQYFDMLRDVGQSSRATTVFLPHAPDSVAGLQAAMRDGFMSG 240
            GV+RQRKAIV+GLRDS+ +F+ +I GT+ KDVMDLLLLTQYFDMLRDVGQSSRA TVFLPHAP SVA +QAAMRDGFM G
Sbjct:  105 GVSRQRKAIVDGLRDSVQNFAEAIDGTSPKDVMDLLLLTQYFDMLRDVGQSSRAATVFLPHAPQSVAAIQAAMRDGFMQG 184          
BLAST of mRNA_P-wetherbeei_contig7177.1.1 vs. uniprot
Match: A0A835YL74_9STRA (Flagellar associated protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YL74_9STRA)

HSP 1 Score: 132 bits (331), Expect = 4.050e-36
Identity = 63/78 (80.77%), Postives = 73/78 (93.59%), Query Frame = 1
Query:    1 GVARQRKAIVEGLRDSIHDFSASIHGTTAKDVMDLLLLTQYFDMLRDVGQSSRATTVFLPHAPDSVAGLQAAMRDGFM 234
            GV+RQR+AIV GLRDSIHDFS+SI GTT KDVMDLLLLTQYFDMLRD+GQS++++T+FLPHAP+SVA LQ AMRDGFM
Sbjct:  202 GVSRQRQAIVAGLRDSIHDFSSSIEGTTPKDVMDLLLLTQYFDMLRDIGQSTKSSTIFLPHAPESVASLQGAMRDGFM 279          
BLAST of mRNA_P-wetherbeei_contig7177.1.1 vs. uniprot
Match: A0A6H5KBQ9_9PHAE (PHB domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KBQ9_9PHAE)

HSP 1 Score: 130 bits (326), Expect = 9.880e-35
Identity = 65/80 (81.25%), Postives = 71/80 (88.75%), Query Frame = 1
Query:    1 GVARQRKAIVEGLRDSIHDFSASIHGTTAKDVMDLLLLTQYFDMLRDVGQSSRATTVFLPHAPDSVAGLQAAMRDGFMSG 240
            GV+RQRKAIV+GLRDS+  FS +I GT+ KDVMDLLLLTQYFDMLRDVGQSSRA TVFLPHAP SVA LQ+AMRDGFM G
Sbjct:  270 GVSRQRKAIVDGLRDSVQTFSETIDGTSPKDVMDLLLLTQYFDMLRDVGQSSRAATVFLPHAPQSVASLQSAMRDGFMQG 349          
BLAST of mRNA_P-wetherbeei_contig7177.1.1 vs. uniprot
Match: D8LDT1_ECTSI (PHB domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LDT1_ECTSI)

HSP 1 Score: 130 bits (326), Expect = 2.120e-34
Identity = 64/80 (80.00%), Postives = 72/80 (90.00%), Query Frame = 1
Query:    1 GVARQRKAIVEGLRDSIHDFSASIHGTTAKDVMDLLLLTQYFDMLRDVGQSSRATTVFLPHAPDSVAGLQAAMRDGFMSG 240
            GV+RQRKAIV+GLRDS+ +F+ +I GT+ KDVMDLLLLTQYFDMLRDVGQSSRA TVFLPHAP SVA +QAAMRDGFM G
Sbjct:  311 GVSRQRKAIVDGLRDSVQNFAEAIDGTSPKDVMDLLLLTQYFDMLRDVGQSSRAATVFLPHAPQSVAAIQAAMRDGFMQG 390          
BLAST of mRNA_P-wetherbeei_contig7177.1.1 vs. uniprot
Match: A0A7S4IJZ4_9EUKA (Hypothetical protein n=1 Tax=Vannella sp. CB-2014 TaxID=1487602 RepID=A0A7S4IJZ4_9EUKA)

HSP 1 Score: 105 bits (263), Expect = 4.990e-26
Identity = 47/80 (58.75%), Postives = 67/80 (83.75%), Query Frame = 1
Query:    1 GVARQRKAIVEGLRDSIHDFSASIHGTTAKDVMDLLLLTQYFDMLRDVGQSSRATTVFLPHAPDSVAGLQAAMRDGFMSG 240
            G+ARQRKAIVEGL++S+  F+ S+ GT+AKDVMDL+L+TQYFD L+D+G +S+++T+F+PH+P SV  +   +RDGFM G
Sbjct:  202 GIARQRKAIVEGLQESVTTFADSVEGTSAKDVMDLVLVTQYFDTLKDLGSNSKSSTIFIPHSPGSVGSVAEQVRDGFMQG 281          
BLAST of mRNA_P-wetherbeei_contig7177.1.1 vs. uniprot
Match: F0YP67_AURAN (PHB domain-containing protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YP67_AURAN)

HSP 1 Score: 102 bits (254), Expect = 8.330e-26
Identity = 55/79 (69.62%), Postives = 62/79 (78.48%), Query Frame = 1
Query:    1 GVARQRKAIVEGLRDSIHDFSASIHGTTAKDVMDLLLLTQYFDMLRDVGQSS-RATTVFLPHAPDSVAGLQAAMRDGFM 234
            GVARQR+AIV GL+DSI +FS  I GTT KDVMDLLLLTQYFDML+DVG S     T+FLPHAP SVA LQ +M+ G M
Sbjct:   91 GVARQRQAIVGGLQDSIIEFSGEIAGTTPKDVMDLLLLTQYFDMLKDVGASGVSGKTLFLPHAPSSVAELQKSMQSGLM 169          
BLAST of mRNA_P-wetherbeei_contig7177.1.1 vs. uniprot
Match: A0A7J6WXU5_THATH (Hypersensitive-induced response protein n=1 Tax=Thalictrum thalictroides TaxID=46969 RepID=A0A7J6WXU5_THATH)

HSP 1 Score: 100 bits (249), Expect = 1.460e-25
Identity = 44/80 (55.00%), Postives = 65/80 (81.25%), Query Frame = 1
Query:    1 GVARQRKAIVEGLRDSIHDFSASIHGTTAKDVMDLLLLTQYFDMLRDVGQSSRATTVFLPHAPDSVAGLQAAMRDGFMSG 240
            G+ARQR+AIV+GLRDS+  FS ++ GTTAKDVMD++L+TQYFD ++++G SS+++ VF+PH P +V  + A +RDG + G
Sbjct:   47 GIARQRQAIVDGLRDSVLGFSVNVPGTTAKDVMDMVLVTQYFDTMKEIGASSKSSAVFIPHGPGAVRDVAAQIRDGLLQG 126          
BLAST of mRNA_P-wetherbeei_contig7177.1.1 vs. uniprot
Match: A0A446UA84_TRITD (Uncharacterized protein n=1 Tax=Triticum turgidum subsp. durum TaxID=4567 RepID=A0A446UA84_TRITD)

HSP 1 Score: 99.8 bits (247), Expect = 2.690e-25
Identity = 43/80 (53.75%), Postives = 64/80 (80.00%), Query Frame = 1
Query:    1 GVARQRKAIVEGLRDSIHDFSASIHGTTAKDVMDLLLLTQYFDMLRDVGQSSRATTVFLPHAPDSVAGLQAAMRDGFMSG 240
            G+ARQR+AIV+GLRDS+  FS ++ GTTAKDVMD++L+TQYFD ++++G SS+++ VF+PH P +V  +   +RDG + G
Sbjct:   41 GIARQRQAIVDGLRDSVLGFSVNVPGTTAKDVMDMVLITQYFDTMKEIGASSKSSAVFIPHGPGAVRDIATQIRDGLLQG 120          
BLAST of mRNA_P-wetherbeei_contig7177.1.1 vs. uniprot
Match: A0A2Z6ZQT4_9LAMI (Band 7 family protein (Fragment) n=1 Tax=Dorcoceras hygrometricum TaxID=472368 RepID=A0A2Z6ZQT4_9LAMI)

HSP 1 Score: 98.6 bits (244), Expect = 2.960e-25
Identity = 43/78 (55.13%), Postives = 64/78 (82.05%), Query Frame = 1
Query:    1 GVARQRKAIVEGLRDSIHDFSASIHGTTAKDVMDLLLLTQYFDMLRDVGQSSRATTVFLPHAPDSVAGLQAAMRDGFM 234
            G+ARQR+AIV+GLRDS+  FS S+ GTTAKDVMD++L+TQYFD ++++G SS+++ VF+PH P +V  ++  +RDG +
Sbjct:   14 GIARQRQAIVDGLRDSVLAFSESVPGTTAKDVMDMVLVTQYFDTMKEIGASSKSSAVFVPHGPGAVRDIETQIRDGLL 91          
BLAST of mRNA_P-wetherbeei_contig7177.1.1 vs. uniprot
Match: A0A452YCG5_AEGTS (PHB domain-containing protein n=1 Tax=Aegilops tauschii subsp. strangulata TaxID=200361 RepID=A0A452YCG5_AEGTS)

HSP 1 Score: 101 bits (251), Expect = 5.340e-25
Identity = 45/78 (57.69%), Postives = 66/78 (84.62%), Query Frame = 1
Query:    1 GVARQRKAIVEGLRDSIHDFSASIHGTTAKDVMDLLLLTQYFDMLRDVGQSSRATTVFLPHAPDSVAGLQAAMRDGFM 234
            G+ARQR+AIV+GLRDS+  FS ++ GT+AKDVMDL+LLTQYFD ++++G SS+++ VFLPH P +VA + + +R+GF+
Sbjct:  122 GIARQRQAIVDGLRDSVLGFSGNVPGTSAKDVMDLVLLTQYFDTMKEIGASSKSSAVFLPHGPGAVADIASQIRNGFL 199          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig7177.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KP74_9PHAE2.420e-3680.00PHB domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A835YL74_9STRA4.050e-3680.77Flagellar associated protein n=1 Tax=Tribonema min... [more]
A0A6H5KBQ9_9PHAE9.880e-3581.25PHB domain-containing protein n=2 Tax=Ectocarpus T... [more]
D8LDT1_ECTSI2.120e-3480.00PHB domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A7S4IJZ4_9EUKA4.990e-2658.75Hypothetical protein n=1 Tax=Vannella sp. CB-2014 ... [more]
F0YP67_AURAN8.330e-2669.62PHB domain-containing protein n=1 Tax=Aureococcus ... [more]
A0A7J6WXU5_THATH1.460e-2555.00Hypersensitive-induced response protein n=1 Tax=Th... [more]
A0A446UA84_TRITD2.690e-2553.75Uncharacterized protein n=1 Tax=Triticum turgidum ... [more]
A0A2Z6ZQT4_9LAMI2.960e-2555.13Band 7 family protein (Fragment) n=1 Tax=Dorcocera... [more]
A0A452YCG5_AEGTS5.340e-2557.69PHB domain-containing protein n=1 Tax=Aegilops tau... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig7177contigP-wetherbeei_contig7177:1170..2116 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D8LDT1
Preferred nameHIR1
PFAMsBand_7
Model size240
Max annot lvl2759|Eukaryota
KEGG koko:K03129
KEGG Pathwayko03022,ko05016,ko05168,map03022,map05016,map05168
Hectar predicted targeting categoryother localisation
GOsGO:0002239,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005773,GO:0005774,GO:0005794,GO:0005886,GO:0005911,GO:0008150,GO:0009506,GO:0009507,GO:0009536,GO:0009605,GO:0009607,GO:0012505,GO:0016020,GO:0019899,GO:0019900,GO:0019901,GO:0030054,GO:0031090,GO:0043207,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043424,GO:0044422,GO:0044424,GO:0044437,GO:0044444,GO:0044446,GO:0044464,GO:0050896,GO:0051704,GO:0051707,GO:0055044,GO:0071944,GO:0098588,GO:0098805
Exons3
Evalue3.48e-35
EggNOG OGsCOG0330@1|root,KOG2620@2759|Eukaryota
Descriptionstress-induced mitochondrial fusion
Cds size240
COG categoryO
BRITEko00000,ko00001,ko03021,ko03036
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186963.4960687-CDS-P-wetherbeei_contig7177:1169..12671683186963.4960687-CDS-P-wetherbeei_contig7177:1169..1267Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig7177 1170..1267 -
1683186963.5079467-CDS-P-wetherbeei_contig7177:1561..16561683186963.5079467-CDS-P-wetherbeei_contig7177:1561..1656Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig7177 1562..1656 -
1683186963.5174575-CDS-P-wetherbeei_contig7177:2069..21161683186963.5174575-CDS-P-wetherbeei_contig7177:2069..2116Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig7177 2070..2116 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig7177.1.1prot_P-wetherbeei_contig7177.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig7177 1170..2116 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig7177.1.1

>prot_P-wetherbeei_contig7177.1.1 ID=prot_P-wetherbeei_contig7177.1.1|Name=mRNA_P-wetherbeei_contig7177.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=80bp
GVARQRKAIVEGLRDSIHDFSASIHGTTAKDVMDLLLLTQYFDMLRDVGQ
SSRATTVFLPHAPDSVAGLQAAMRDGFMSG
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mRNA from alignment at P-wetherbeei_contig7177:1170..2116-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig7177.1.1 ID=mRNA_P-wetherbeei_contig7177.1.1|Name=mRNA_P-wetherbeei_contig7177.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=947bp|location=Sequence derived from alignment at P-wetherbeei_contig7177:1170..2116- (Phaeothamnion wetherbeei SAG_119_79)
GGTGTCGCCCGCCAGCGGAAGGCCATCGTCGAGGGCCTCCGCGACAGGTG CCTTCGTCTGTCGGTCCTCCATTTGTCAGTCTGATTCAGTCCTTTCCGGT CCAGTTGGTTTTCCGGTTTCCCTGTTGATCGGTCGGTAAGGTTAGTGGTA TCCTGTACGGCGCAGTTTCTTGGGCCATGGGGAACCAAGCCGTCAAAGGA CCTCTTCTCGTTTCGCTTGGTGGGAATGCGGCTGGGGTTGTGCCCGCCTC TCTCCTTTCAGCCTGCCTGCCACTGCCACCTGTCGCCGACGCCGCCATCG CGGCAGCCGTCATGGCTGTCGCAGCTGCCGCCTGCTCCCCCGTTTTTCCT GTCCACCCTCGGCCACGCTCAATGATTCTGTGTCAGTGACTCTCCCTCCT TCATCGCTCCATTCTCTTTCTCCTTTGTCTTACTCCGTAACAAACAAACA ACCATAACAGCATCCACGACTTCTCGGCATCGATCCACGGCACCACAGCC AAGGACGTCATGGACCTGCTGCTCCTCACGCAATACTTCGACATGCTGCG CGACGGTGAGGAGGATTCTGTTTCTTCTTTTCGTCGCTGGACTTCGGCTT TTGTGTCGGTTCCATTCTGGTACAATTTTTTCCCCGATGAAGCGCCGACC TCGCGGTTCGGGCTCTTTTTGCGGCCCTCTATCAGGTTTCTCGCCTTTGG CCCTCTATCAGGTTTCTTGCCTTTGTGCTTTTTTCCTGCCTTACTGTATT TATTCATTACACCCAACCTCGTCCCTTTTCCCTGCCTTTTCTGAATCTGT GTGTCTCTCTCTTTTTCTGGCGGGGTGGGAAAACCTTCTCTCGCCGTAGT CGGACAATCGTCGCGGGCTACCACAGTTTTCCTGCCGCACGCGCCTGACT CGGTGGCCGGCCTGCAGGCAGCGATGCGGGACGGCTTCATGAGCGGC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig7177:1170..2116-

>mRNA_P-wetherbeei_contig7177.1.1 ID=mRNA_P-wetherbeei_contig7177.1.1|Name=mRNA_P-wetherbeei_contig7177.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=240bp|location=Sequence derived from alignment at P-wetherbeei_contig7177:1170..2116- (Phaeothamnion wetherbeei SAG_119_79)
GGTGTCGCCCGCCAGCGGAAGGCCATCGTCGAGGGCCTCCGCGACAGCAT
CCACGACTTCTCGGCATCGATCCACGGCACCACAGCCAAGGACGTCATGG
ACCTGCTGCTCCTCACGCAATACTTCGACATGCTGCGCGACGTCGGACAA
TCGTCGCGGGCTACCACAGTTTTCCTGCCGCACGCGCCTGACTCGGTGGC
CGGCCTGCAGGCAGCGATGCGGGACGGCTTCATGAGCGGC
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