mRNA_P-wetherbeei_contig7170.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig7170.1.1
Unique NamemRNA_P-wetherbeei_contig7170.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig7170.1.1 vs. uniprot
Match: A0A836CDY4_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CDY4_9STRA)

HSP 1 Score: 57.8 bits (138), Expect = 2.660e-8
Identity = 27/57 (47.37%), Postives = 38/57 (66.67%), Query Frame = 1 
Query:    1 ASLAGMLQKQATYVHLAALEPQLWHRPFHAPSYQRLLAAQEDIHASLVLMARAATAF 171
            A +   L+KQ+ Y+  A+ EP LWHRPFH PSY  +  AQ ++ A+LVL+ RA  +F
Sbjct: 1013 AQVTAALEKQSKYMVQASQEPNLWHRPFHLPSYMAVYQAQREVLAALVLVKRAEQSF 1069
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig7170.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A836CDY4_9STRA2.660e-847.37Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig7170contigP-wetherbeei_contig7170:1280..1450 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size171
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Cds size156
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186963.1580882-CDS-P-wetherbeei_contig7170:1279..14351683186963.1580882-CDS-P-wetherbeei_contig7170:1279..1435Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig7170 1280..1435 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186963.1726456-UTR-P-wetherbeei_contig7170:1435..14501683186963.1726456-UTR-P-wetherbeei_contig7170:1435..1450Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig7170 1436..1450 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig7170.1.1prot_P-wetherbeei_contig7170.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig7170 1280..1435 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig7170.1.1

>prot_P-wetherbeei_contig7170.1.1 ID=prot_P-wetherbeei_contig7170.1.1|Name=mRNA_P-wetherbeei_contig7170.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=52bp
MLQKQATYVHLAALEPQLWHRPFHAPSYQRLLAAQEDIHASLVLMARAAT
AF
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mRNA from alignment at P-wetherbeei_contig7170:1280..1450-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig7170.1.1 ID=mRNA_P-wetherbeei_contig7170.1.1|Name=mRNA_P-wetherbeei_contig7170.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=171bp|location=Sequence derived from alignment at P-wetherbeei_contig7170:1280..1450- (Phaeothamnion wetherbeei SAG_119_79)
GCATCACTGGCGGGCATGCTGCAGAAGCAGGCCACCTATGTGCATCTGGC
GGCGCTCGAGCCGCAGCTCTGGCACCGCCCCTTCCACGCGCCGTCCTACC
AGCGACTGCTGGCGGCGCAGGAGGATATTCATGCTTCGCTCGTGCTCATG
GCGCGCGCCGCCACAGCCTTC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig7170:1280..1450-

>mRNA_P-wetherbeei_contig7170.1.1 ID=mRNA_P-wetherbeei_contig7170.1.1|Name=mRNA_P-wetherbeei_contig7170.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=156bp|location=Sequence derived from alignment at P-wetherbeei_contig7170:1280..1450- (Phaeothamnion wetherbeei SAG_119_79)
ATGCTGCAGAAGCAGGCCACCTATGTGCATCTGGCGGCGCTCGAGCCGCA
GCTCTGGCACCGCCCCTTCCACGCGCCGTCCTACCAGCGACTGCTGGCGG
CGCAGGAGGATATTCATGCTTCGCTCGTGCTCATGGCGCGCGCCGCCACA
GCCTTC
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