mRNA_P-wetherbeei_contig7169.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig7169.1.1
Unique NamemRNA_P-wetherbeei_contig7169.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig7169.1.1 vs. uniprot
Match: A0A2E8E5D8_9BACT (Uncharacterized protein n=1 Tax=Acidobacteria bacterium TaxID=1978231 RepID=A0A2E8E5D8_9BACT)

HSP 1 Score: 56.6 bits (135), Expect = 1.780e-7
Identity = 40/87 (45.98%), Postives = 45/87 (51.72%), Query Frame = 1 
Query:    1 VREFCRVGGDPDARVADGQTLLAVAAWAGREGPARE------------LIFAGADVNAMDDSGRTALHGAAAAGVSYLAEVLLARGA 225
            +R     G DPD    DG T L VAA  G  G   +            L   GADVNA+DDSG TA+HGAAA G   + E LLARGA
Sbjct:  374 MRPLLAAGADPDLSTFDGTTPLMVAAGIGWRGNFSQNAPDSWMKAVHFLAEIGADVNAVDDSGYTAMHGAAALGNKEMVEFLLARGA 460
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BLAST of mRNA_P-wetherbeei_contig7169.1.1 vs. uniprot
Match: A0A024SEE7_HYPJR (Ankyrin (Fragment) n=1 Tax=Hypocrea jecorina (strain ATCC 56765 / BCRC 32924 / NRRL 11460 / Rut C-30) TaxID=1344414 RepID=A0A024SEE7_HYPJR)

HSP 1 Score: 52.0 bits (123), Expect = 4.290e-7
Identity = 26/55 (47.27%), Postives = 39/55 (70.91%), Query Frame = 1 
Query:    1 VREFCRVGGDPDARVADGQTLLAVAAWAGREGPARELIFAGADVNAMDDSGRTAL 165
            ++   R+G DPD + ADG+T L +AA+ GR   A+ L+ AGAD+NA++ SG+T L
Sbjct:   14 IKVIMRLGTDPDHKDADGRTALHIAAYLGRLDCAKTLLSAGADINAVEYSGKTPL 68
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BLAST of mRNA_P-wetherbeei_contig7169.1.1 vs. uniprot
Match: A0A8C2D9K0_CYPCA (DUF3454 domain-containing protein n=1 Tax=Cyprinus carpio TaxID=7962 RepID=A0A8C2D9K0_CYPCA)

HSP 1 Score: 52.4 bits (124), Expect = 5.590e-6
Identity = 36/66 (54.55%), Postives = 41/66 (62.12%), Query Frame = 1 
Query:   28 DPDARVADGQTLLAVAAWAGREGPARELIFAGADVNAMDDSGRTALHGAAAAGVSYLAEVLLARGA 225
            D DAR+ DG T L +AA    EG   ELI   ADVNA+DDSG++ALH AAA      A VLL  GA
Sbjct:  103 DLDARMHDGTTPLILAARLAVEGMVEELINCHADVNAIDDSGKSALHWAAAVNNVDAAMVLLKNGA 168
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BLAST of mRNA_P-wetherbeei_contig7169.1.1 vs. uniprot
Match: A0A8C6ULA4_9GOBI (Neurogenic locus notch homolog protein 1 n=1 Tax=Neogobius melanostomus TaxID=47308 RepID=A0A8C6ULA4_9GOBI)

HSP 1 Score: 52.4 bits (124), Expect = 5.810e-6
Identity = 36/66 (54.55%), Postives = 41/66 (62.12%), Query Frame = 1 
Query:   28 DPDARVADGQTLLAVAAWAGREGPARELIFAGADVNAMDDSGRTALHGAAAAGVSYLAEVLLARGA 225
            D DAR+ DG T L +AA    EG   ELI   ADVNA+DD G++ALH AAA   S  A VLL  GA
Sbjct: 1744 DLDARMHDGTTPLILAARLAVEGMVEELINCHADVNAIDDFGKSALHWAAAVNNSEAAIVLLKNGA 1809
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BLAST of mRNA_P-wetherbeei_contig7169.1.1 vs. uniprot
Match: A0A8C1Z7F6_CYPCA (Neurogenic locus notch homolog protein 1 n=1 Tax=Cyprinus carpio TaxID=7962 RepID=A0A8C1Z7F6_CYPCA)

HSP 1 Score: 52.4 bits (124), Expect = 5.810e-6
Identity = 36/66 (54.55%), Postives = 41/66 (62.12%), Query Frame = 1 
Query:   28 DPDARVADGQTLLAVAAWAGREGPARELIFAGADVNAMDDSGRTALHGAAAAGVSYLAEVLLARGA 225
            D DAR+ DG T L +AA    EG   ELI   ADVNA+DDSG++ALH AAA      A VLL  GA
Sbjct: 1772 DLDARMHDGTTPLILAARLAVEGMVEELINCHADVNAIDDSGKSALHWAAAVNNVDAAMVLLKNGA 1837
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BLAST of mRNA_P-wetherbeei_contig7169.1.1 vs. uniprot
Match: A0A673LUX1_9TELE (Neurogenic locus notch homolog protein 1 n=1 Tax=Sinocyclocheilus rhinocerous TaxID=307959 RepID=A0A673LUX1_9TELE)

HSP 1 Score: 52.4 bits (124), Expect = 5.810e-6
Identity = 36/66 (54.55%), Postives = 41/66 (62.12%), Query Frame = 1 
Query:   28 DPDARVADGQTLLAVAAWAGREGPARELIFAGADVNAMDDSGRTALHGAAAAGVSYLAEVLLARGA 225
            D DAR+ DG T L +AA    EG   ELI   ADVNA+DDSG++ALH AAA      A VLL  GA
Sbjct: 1855 DLDARMHDGTTPLILAARLAVEGMVEELINCHADVNAIDDSGKSALHWAAAVNNVDAAMVLLKNGA 1920
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BLAST of mRNA_P-wetherbeei_contig7169.1.1 vs. uniprot
Match: A0A8C6ULZ6_9GOBI (Neurogenic locus notch homolog protein 1 n=1 Tax=Neogobius melanostomus TaxID=47308 RepID=A0A8C6ULZ6_9GOBI)

HSP 1 Score: 52.4 bits (124), Expect = 5.810e-6
Identity = 36/66 (54.55%), Postives = 41/66 (62.12%), Query Frame = 1 
Query:   28 DPDARVADGQTLLAVAAWAGREGPARELIFAGADVNAMDDSGRTALHGAAAAGVSYLAEVLLARGA 225
            D DAR+ DG T L +AA    EG   ELI   ADVNA+DD G++ALH AAA   S  A VLL  GA
Sbjct: 1817 DLDARMHDGTTPLILAARLAVEGMVEELINCHADVNAIDDFGKSALHWAAAVNNSEAAIVLLKNGA 1882
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BLAST of mRNA_P-wetherbeei_contig7169.1.1 vs. uniprot
Match: A0A498MWR9_LABRO (Neurogenic locus notch homolog protein 1 n=2 Tax=Cyprinidae TaxID=7953 RepID=A0A498MWR9_LABRO)

HSP 1 Score: 52.4 bits (124), Expect = 5.810e-6
Identity = 36/66 (54.55%), Postives = 41/66 (62.12%), Query Frame = 1 
Query:   28 DPDARVADGQTLLAVAAWAGREGPARELIFAGADVNAMDDSGRTALHGAAAAGVSYLAEVLLARGA 225
            D DAR+ DG T L +AA    EG   ELI   ADVNA+DDSG++ALH AAA      A VLL  GA
Sbjct: 1839 DLDARMHDGTTPLILAARLAVEGMVEELINCHADVNAIDDSGKSALHWAAAVNNVDAAMVLLKNGA 1904
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BLAST of mRNA_P-wetherbeei_contig7169.1.1 vs. uniprot
Match: A0A7N8YPM3_9TELE (Neurogenic locus notch homolog protein 1 n=1 Tax=Mastacembelus armatus TaxID=205130 RepID=A0A7N8YPM3_9TELE)

HSP 1 Score: 52.4 bits (124), Expect = 5.810e-6
Identity = 36/66 (54.55%), Postives = 40/66 (60.61%), Query Frame = 1 
Query:   28 DPDARVADGQTLLAVAAWAGREGPARELIFAGADVNAMDDSGRTALHGAAAAGVSYLAEVLLARGA 225
            D DAR+ DG T L +AA  G EG   ELI   AD NA DDSG++ALH AAA      A VLL  GA
Sbjct: 1880 DLDARMHDGTTPLILAARLGVEGMVEELINCHADANATDDSGKSALHWAAAVNNVEAAIVLLKNGA 1945
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BLAST of mRNA_P-wetherbeei_contig7169.1.1 vs. uniprot
Match: A0A671RIM5_9TELE (Neurogenic locus notch homolog protein 1 n=1 Tax=Sinocyclocheilus anshuiensis TaxID=1608454 RepID=A0A671RIM5_9TELE)

HSP 1 Score: 52.4 bits (124), Expect = 5.810e-6
Identity = 36/66 (54.55%), Postives = 41/66 (62.12%), Query Frame = 1 
Query:   28 DPDARVADGQTLLAVAAWAGREGPARELIFAGADVNAMDDSGRTALHGAAAAGVSYLAEVLLARGA 225
            D DAR+ DG T L +AA    EG   ELI   ADVNA+DDSG++ALH AAA      A VLL  GA
Sbjct: 1873 DLDARMHDGTTPLILAARLAVEGMVEELINCHADVNAIDDSGKSALHWAAAVNNVDAAMVLLKNGA 1938
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig7169.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2E8E5D8_9BACT1.780e-745.98Uncharacterized protein n=1 Tax=Acidobacteria bact... [more]
A0A024SEE7_HYPJR4.290e-747.27Ankyrin (Fragment) n=1 Tax=Hypocrea jecorina (stra... [more]
A0A8C2D9K0_CYPCA5.590e-654.55DUF3454 domain-containing protein n=1 Tax=Cyprinus... [more]
A0A8C6ULA4_9GOBI5.810e-654.55Neurogenic locus notch homolog protein 1 n=1 Tax=N... [more]
A0A8C1Z7F6_CYPCA5.810e-654.55Neurogenic locus notch homolog protein 1 n=1 Tax=C... [more]
A0A673LUX1_9TELE5.810e-654.55Neurogenic locus notch homolog protein 1 n=1 Tax=S... [more]
A0A8C6ULZ6_9GOBI5.810e-654.55Neurogenic locus notch homolog protein 1 n=1 Tax=N... [more]
A0A498MWR9_LABRO5.810e-654.55Neurogenic locus notch homolog protein 1 n=2 Tax=C... [more]
A0A7N8YPM3_9TELE5.810e-654.55Neurogenic locus notch homolog protein 1 n=1 Tax=M... [more]
A0A671RIM5_9TELE5.810e-654.55Neurogenic locus notch homolog protein 1 n=1 Tax=S... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig7169contigP-wetherbeei_contig7169:548..790 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog51337.XP_004672822.1
Preferred nameNOTCH3
PFAMsAnk,Ank_2,Ank_5,DUF3454,EGF,EGF_CA,NOD,NODP,Notch,hEGF
Model size243
Max annot lvl33208|Metazoa
KEGG koko:K02599,ko:K20994,ko:K20995
KEGG Pathwayko01522,ko04320,ko04330,ko04371,ko04658,ko04919,ko05020,ko05165,ko05200,ko05206,ko05224,map01522,map04320,map04330,map04371,map04658,map04919,map05020,map05165,map05200,map05206,map05224
KEGG ModuleM00682
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0000122,GO:0000139,GO:0000278,GO:0000578,GO:0000902,GO:0000904,GO:0001525,GO:0001568,GO:0001654,GO:0001655,GO:0001667,GO:0001700,GO:0001708,GO:0001709,GO:0001736,GO:0001738,GO:0001745,GO:0001751,GO:0001752,GO:0001754,GO:0001822,GO:0001894,GO:0001932,GO:0001933,GO:0001944,GO:0002009,GO:0002052,GO:0002064,GO:0002065,GO:0002066,GO:0002164,GO:0002165,GO:0002213,GO:0002376,GO:0002520,GO:0002682,GO:0002683,GO:0002684,GO:0003002,GO:0003006,GO:0003008,GO:0003674,GO:0003682,GO:0004888,GO:0005488,GO:0005515,GO:0005575,GO:0005576,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005768,GO:0005770,GO:0005783,GO:0005789,GO:0005794,GO:0005829,GO:0005856,GO:0005886,GO:0005887,GO:0005911,GO:0005912,GO:0006109,GO:0006110,GO:0006139,GO:0006140,GO:0006351,GO:0006352,GO:0006355,GO:0006357,GO:0006366,GO:0006367,GO:0006725,GO:0006807,GO:0006928,GO:0006935,GO:0006950,GO:0006952,GO:0006996,GO:0007010,GO:0007015,GO:0007049,GO:0007154,GO:0007155,GO:0007157,GO:0007162,GO:0007163,GO:0007164,GO:0007165,GO:0007166,GO:0007219,GO:0007221,GO:0007267,GO:0007275,GO:0007276,GO:0007281,GO:0007292,GO:0007293,GO:0007297,GO:0007298,GO:0007304,GO:0007306,GO:0007308,GO:0007309,GO:0007314,GO:0007346,GO:0007350,GO:0007351,GO:0007386,GO:0007389,GO:0007391,GO:0007398,GO:0007399,GO:0007400,GO:0007403,GO:0007405,GO:0007409,GO:0007411,GO:0007417,GO:0007419,GO:0007420,GO:0007422,GO:0007423,GO:0007424,GO:0007440,GO:0007442,GO:0007443,GO:0007444,GO:0007446,GO:0007447,GO:0007449,GO:0007450,GO:0007451,GO:0007455,GO:0007460,GO:0007464,GO:0007472,GO:0007473,GO:0007474,GO:0007476,GO:0007478,GO:0007480,GO:0007483,GO:0007484,GO:0007485,GO:0007498,GO:0007517,GO:0007519,GO:0007521,GO:0007548,GO:0007552,GO:0007560,GO:0007568,GO:0007610,GO:0007611,GO:0007613,GO:0007616,GO:0008045,GO:0008052,GO:0008150,GO:0008152,GO:0008219,GO:0008283,GO:0008284,GO:0008340,GO:0008347,GO:0008356,GO:0008358,GO:0008407,GO:0008587,GO:0008593,GO:0008595,GO:0009058,GO:0009059,GO:0009605,GO:0009607,GO:0009608,GO:0009611,GO:0009653,GO:0009790,GO:0009791,GO:0009792,GO:0009798,GO:0009880,GO:0009886,GO:0009887,GO:0009888,GO:0009889,GO:0009890,GO:0009891,GO:0009892,GO:0009893,GO:0009894,GO:0009948,GO:0009950,GO:0009952,GO:0009953,GO:0009954,GO:0009966,GO:0009967,GO:0009968,GO:0009986,GO:0009987,GO:0009994,GO:0009996,GO:0010001,GO:0010160,GO:0010259,GO:0010453,GO:0010454,GO:0010467,GO:0010468,GO:0010556,GO:0010557,GO:0010558,GO:0010563,GO:0010564,GO:0010604,GO:0010605,GO:0010623,GO:0010628,GO:0010629,GO:0010631,GO:0010646,GO:0010647,GO:0010648,GO:0010720,GO:0010721,GO:0010927,GO:0010941,GO:0010942,GO:0012501,GO:0012505,GO:0014016,GO:0014017,GO:0014019,GO:0014706,GO:0015629,GO:0016020,GO:0016021,GO:0016043,GO:0016070,GO:0016330,GO:0016331,GO:0016333,GO:0016348,GO:0016360,GO:0016477,GO:0018130,GO:0019219,GO:0019220,GO:0019222,GO:0019438,GO:0019827,GO:0019899,GO:0019953,GO:0021700,GO:0021781,GO:0022008,GO:0022407,GO:0022408,GO:0022412,GO:0022414,GO:0022416,GO:0022603,GO:0022607,GO:0022610,GO:0023051,GO:0023052,GO:0023056,GO:0023057,GO:0030029,GO:0030030,GO:0030036,GO:0030054,GO:0030097,GO:0030139,GO:0030154,GO:0030155,GO:0030182,GO:0030539,GO:0030703,GO:0030707,GO:0030708,GO:0030713,GO:0030718,GO:0030720,GO:0030808,GO:0030811,GO:0030855,GO:0030900,GO:0031090,GO:0031099,GO:0031175,GO:0031224,GO:0031226,GO:0031323,GO:0031324,GO:0031325,GO:0031326,GO:0031327,GO:0031328,GO:0031329,GO:0031344,GO:0031399,GO:0031400,GO:0031410,GO:0031974,GO:0031981,GO:0031982,GO:0031984,GO:0032268,GO:0032269,GO:0032501,GO:0032502,GO:0032504,GO:0032774,GO:0032835,GO:0032872,GO:0032873,GO:0032989,GO:0032990,GO:0032991,GO:0034641,GO:0034645,GO:0034654,GO:0035003,GO:0035107,GO:0035112,GO:0035114,GO:0035120,GO:0035126,GO:0035153,GO:0035155,GO:0035157,GO:0035161,GO:0035162,GO:0035163,GO:0035165,GO:0035166,GO:0035167,GO:0035168,GO:0035170,GO:0035171,GO:0035172,GO:0035203,GO:0035204,GO:0035214,GO:0035215,GO:0035218,GO:0035220,GO:0035222,GO:0035239,GO:0035265,GO:0035282,GO:0035285,GO:0035295,GO:0036011,GO:0036099,GO:0036335,GO:0038023,GO:0040007,GO:0040008,GO:0040011,GO:0042051,GO:0042060,GO:0042063,GO:0042067,GO:0042127,GO:0042175,GO:0042221,GO:0042246,GO:0042325,GO:0042326,GO:0042330,GO:0042386,GO:0042387,GO:0042461,GO:0042462,GO:0042478,GO:0042480,GO:0042592,GO:0042659,GO:0042675,GO:0042676,GO:0042686,GO:0042688,GO:0042689,GO:0042691,GO:0042692,GO:0042693,GO:0042706,GO:0042802,GO:0042981,GO:0043065,GO:0043067,GO:0043068,GO:0043170,GO:0043207,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043235,GO:0043296,GO:0043408,GO:0043409,GO:0043467,GO:0043470,GO:0043523,GO:0043525,GO:0043696,GO:0043697,GO:0044085,GO:0044087,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044422,GO:0044424,GO:0044425,GO:0044428,GO:0044431,GO:0044432,GO:0044444,GO:0044446,GO:0044459,GO:0044464,GO:0044703,GO:0045165,GO:0045168,GO:0045314,GO:0045316,GO:0045463,GO:0045465,GO:0045466,GO:0045468,GO:0045595,GO:0045596,GO:0045597,GO:0045610,GO:0045611,GO:0045612,GO:0045613,GO:0045614,GO:0045664,GO:0045665,GO:0045746,GO:0045747,GO:0045787,GO:0045892,GO:0045893,GO:0045931,GO:0045934,GO:0045935,GO:0045936,GO:0045944,GO:0046328,GO:0046329,GO:0046331,GO:0046483,GO:0046530,GO:0046532,GO:0046533,GO:0046552,GO:0046661,GO:0046666,GO:0046667,GO:0046843,GO:0048052,GO:0048056,GO:0048138,GO:0048139,GO:0048190,GO:0048468,GO:0048469,GO:0048477,GO:0048513,GO:0048514,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048534,GO:0048542,GO:0048546,GO:0048563,GO:0048565,GO:0048568,GO:0048569,GO:0048580,GO:0048581,GO:0048583,GO:0048584,GO:0048585,GO:0048589,GO:0048592,GO:0048598,GO:0048599,GO:0048608,GO:0048609,GO:0048619,GO:0048645,GO:0048646,GO:0048660,GO:0048661,GO:0048663,GO:0048666,GO:0048667,GO:0048699,GO:0048707,GO:0048729,GO:0048731,GO:0048732,GO:0048736,GO:0048737,GO:0048749,GO:0048803,GO:0048805,GO:0048806,GO:0048808,GO:0048812,GO:0048844,GO:0048856,GO:0048858,GO:0048859,GO:0048863,GO:0048864,GO:0048865,GO:0048867,GO:0048869,GO:0048870,GO:0048871,GO:0048872,GO:0050673,GO:0050767,GO:0050768,GO:0050769,GO:0050789,GO:0050793,GO:0050794,GO:0050877,GO:0050890,GO:0050896,GO:0051093,GO:0051094,GO:0051128,GO:0051171,GO:0051172,GO:0051173,GO:0051174,GO:0051179,GO:0051193,GO:0051196,GO:0051239,GO:0051240,GO:0051241,GO:0051246,GO:0051248,GO:0051252,GO:0051253,GO:0051254,GO:0051301,GO:0051489,GO:0051674,GO:0051704,GO:0051707,GO:0051716,GO:0051726,GO:0051890,GO:0051960,GO:0051961,GO:0051962,GO:0055123,GO:0060089,GO:0060249,GO:0060250,GO:0060255,GO:0060284,GO:0060288,GO:0060289,GO:0060322,GO:0060429,GO:0060491,GO:0060537,GO:0060538,GO:0060541,GO:0060562,GO:0060571,GO:0060581,GO:0060582,GO:0060840,GO:0061061,GO:0061326,GO:0061331,GO:0061333,GO:0061351,GO:0061382,GO:0061437,GO:0061438,GO:0061439,GO:0061440,GO:0061458,GO:0061525,GO:0061564,GO:0062012,GO:0065007,GO:0065008,GO:0070013,GO:0070161,GO:0070302,GO:0070303,GO:0071704,GO:0071840,GO:0071944,GO:0072001,GO:0072002,GO:0072006,GO:0072012,GO:0072089,GO:0072091,GO:0072102,GO:0072103,GO:0072104,GO:0072358,GO:0072359,GO:0080090,GO:0080134,GO:0080135,GO:0090068,GO:0090130,GO:0090132,GO:0090304,GO:0090596,GO:0090598,GO:0097150,GO:0097435,GO:0097485,GO:0097659,GO:0097708,GO:0098588,GO:0098609,GO:0098727,GO:0098742,GO:0098791,GO:0098796,GO:0098797,GO:0098827,GO:0120032,GO:0120035,GO:0120036,GO:0120039,GO:1900087,GO:1900371,GO:1900542,GO:1901214,GO:1901216,GO:1901360,GO:1901362,GO:1901576,GO:1901987,GO:1901989,GO:1901990,GO:1901992,GO:1902531,GO:1902532,GO:1902679,GO:1902680,GO:1902692,GO:1902806,GO:1902808,GO:1903506,GO:1903507,GO:1903508,GO:1903578,GO:1903706,GO:1903707,GO:1905207,GO:2000026,GO:2000027,GO:2000043,GO:2000045,GO:2000047,GO:2000048,GO:2000112,GO:2000113,GO:2000177,GO:2000179,GO:2000648,GO:2000736,GO:2001013,GO:2001141,GO:2001169
Exons1
Evalue1.3e-06
EggNOG OGsKOG1217@1|root,KOG1217@2759|Eukaryota,38BUP@33154|Opisthokonta,3BAFT@33208|Metazoa,3CRZB@33213|Bilateria,488S5@7711|Chordata,49EBI@7742|Vertebrata,3JEJP@40674|Mammalia,35G8K@314146|Euarchontoglires,4Q4FM@9989|Rodentia
DescriptionNotch signaling pathway
Cds size243
COG categoryT
BRITEko00000,ko00001,ko00002
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186963.0315776-CDS-P-wetherbeei_contig7169:547..7901683186963.0315776-CDS-P-wetherbeei_contig7169:547..790Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig7169 548..790 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig7169.1.1prot_P-wetherbeei_contig7169.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig7169 548..790 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig7169.1.1

>prot_P-wetherbeei_contig7169.1.1 ID=prot_P-wetherbeei_contig7169.1.1|Name=mRNA_P-wetherbeei_contig7169.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=81bp
VREFCRVGGDPDARVADGQTLLAVAAWAGREGPARELIFAGADVNAMDDS
GRTALHGAAAAGVSYLAEVLLARGAAAAVSD
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mRNA from alignment at P-wetherbeei_contig7169:548..790-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig7169.1.1 ID=mRNA_P-wetherbeei_contig7169.1.1|Name=mRNA_P-wetherbeei_contig7169.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=243bp|location=Sequence derived from alignment at P-wetherbeei_contig7169:548..790- (Phaeothamnion wetherbeei SAG_119_79)
GTCCGCGAGTTCTGCCGCGTCGGCGGCGACCCGGACGCACGCGTTGCCGA
CGGCCAGACGCTGCTCGCCGTCGCCGCCTGGGCCGGCCGGGAGGGCCCCG
CCCGAGAGCTGATATTTGCGGGAGCTGACGTAAACGCCATGGACGATTCG
GGCCGGACGGCCTTGCACGGCGCCGCGGCGGCCGGCGTGAGTTACCTTGC
GGAGGTGCTGCTGGCGCGGGGCGCGGCGGCGGCCGTGTCGGAC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig7169:548..790-

>mRNA_P-wetherbeei_contig7169.1.1 ID=mRNA_P-wetherbeei_contig7169.1.1|Name=mRNA_P-wetherbeei_contig7169.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=243bp|location=Sequence derived from alignment at P-wetherbeei_contig7169:548..790- (Phaeothamnion wetherbeei SAG_119_79)
GTCCGCGAGTTCTGCCGCGTCGGCGGCGACCCGGACGCACGCGTTGCCGA
CGGCCAGACGCTGCTCGCCGTCGCCGCCTGGGCCGGCCGGGAGGGCCCCG
CCCGAGAGCTGATATTTGCGGGAGCTGACGTAAACGCCATGGACGATTCG
GGCCGGACGGCCTTGCACGGCGCCGCGGCGGCCGGCGTGAGTTACCTTGC
GGAGGTGCTGCTGGCGCGGGGCGCGGCGGCGGCCGTGTCGGAC
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