mRNA_P-wetherbeei_contig7163.5.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig7163.5.1
Unique NamemRNA_P-wetherbeei_contig7163.5.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig7163.5.1 vs. uniprot
Match: A0A836CC40_9STRA (TFIIE alpha subunit-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CC40_9STRA)

HSP 1 Score: 239 bits (610), Expect = 2.230e-70
Identity = 143/351 (40.74%), Postives = 182/351 (51.85%), Query Frame = 1
Query:    1 ERLMTAVVRAFYEDPYIVVVDALIREKYLKDKEEELGARVNLRHKQVRAVLAALEREGLVQQESISDVIGGTRMSNYWYIDYRRAVDSIRLRIYLMQKRLKDMESKALLDTTYECPQCQATYDLLAVQQLRNAANSFCCSHCCDQDEHSLCGPAPYMLVDQNNRGRLEAFECGRHELNEQLRRSTSADCPREGIFELLS----------------------------------------------------------------ELRDAAVPSTLPSELRARGVGGAY--GQGXXXXXXXXXXXXXXXXXXXXXXXXXAGPSVSGQRMEVLYAHNAAGQEIVVEIEEDSDAE 855
            E+L++ VVRAF++D  ++V+D LIREKYLKDK+++LGAR+ L+ KQVRAVLA LEREGL +QE + D   G R +NYWY+DYR AV+ IRLR YLMQ+RLK+ E   L   TY CPQC AT+ +L +Q+L N A  FCCSHCC+ D H  C   P+ L D +NR RL        EL EQL  S +  C R G+++L+                                                                 +L D  VPS LPSELRARGVGG      G                          G   S + +++LYA NAAG E+VVEIE DSDA+
Sbjct:   17 EKLVSTVVRAFFDDDAVLVIDTLIREKYLKDKDDDLGARLGLQPKQVRAVLARLEREGLARQEEMLDEFSGGRKANYWYVDYRHAVNVIRLRTYLMQRRLKEAERAELARQTYACPQCGATFGVLEIQKLVNGARGFCCSHCCEMDTHETCARGPHSLRDFDNRERLATVTRALRELKEQLSASAAPGCARAGVYDLVXXXXXXXXXXXXXXXXXXXXXXXXXESRGXXXXXXXXXXXXXXXXVYDLVKEAVRAXXXXXXXXXQLHDKPVPSNLPSELRARGVGGGARGSHGASKLARFRDDRFSLHAGYAAGTKGGDGAHGSNRAVDLLYARNAAGYEVVVEIESDSDAD 367          
BLAST of mRNA_P-wetherbeei_contig7163.5.1 vs. uniprot
Match: A0A6H5LCE2_9PHAE (HTH TFE/IIEalpha-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LCE2_9PHAE)

HSP 1 Score: 210 bits (534), Expect = 7.930e-60
Identity = 125/287 (43.55%), Postives = 166/287 (57.84%), Query Frame = 1
Query:    1 ERLMTAVVRAFYEDPYIVVVDALIREKYLKDKEEELGARVNLRHKQVRAVLAALEREGLVQQESISDVIGGTRMSNYWYIDYRRAVDSIRLRIYLMQKRLKD-MESKALLDT--TYECPQCQATYDLLAVQQLRNAANSFCCSHCCDQDEHSLCGPAP-YMLVDQNNRGRLEAFECGRHELNEQLRRSTSADCPREGIFELLSELRDAAVPSTLPSELRARGVGGAYG---QGXXXXXXXXXXXXXXXXXXXXXXXXXAGPSVSGQRMEVLYAHNAAGQEIVVEIEE 840
            ERL+  + RAFY D  ++VVD LIREKY+KDK+E+LG+R+NL+ KQVR+ LA L  EG   +E +SD I   R SNYWYID R AV+ I LR++ M++ L    E+KA      TY CP+C   ++++ + +L N   SFCCSHCC  D+HS C     Y L D N++  L++      +LNEQL  ST    PRE IFEL+  LRD  VPS LPS+LR RG+GG                                 AG   S + ++VLY  N  G+E+VVEIE+
Sbjct:   14 ERLVATIARAFYTDITVLVVDTLIREKYIKDKDEDLGSRLNLQPKQVRSALAELLAEGFAAKEMMSDEIYSGRSSNYWYIDLRHAVNVILLRVFQMKEILSQRQEAKAAHQALPTYVCPRCHEKFEVMDIYKLSNGDRSFCCSHCCPNDDHSGCKKGSGYTLEDFNDKKGLDSVTALIGQLNEQLGESTDPAVPRESIFELVHSLRDTVVPSNLPSQLRQRGMGGQQRGDVSSAHARFQDDFHHRGRAADKAAAERGAAGGRASSRPVQVLYTKNWRGEEVVVEIEQ 300          
BLAST of mRNA_P-wetherbeei_contig7163.5.1 vs. uniprot
Match: A0A4D9CU86_9STRA (HTH TFE/IIEalpha-type domain-containing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9CU86_9STRA)

HSP 1 Score: 141 bits (355), Expect = 7.490e-35
Identity = 84/223 (37.67%), Postives = 127/223 (56.95%), Query Frame = 1
Query:    1 ERLMTAVVRAFYEDPYIVVVDALIREKYLKDKEEELGARVNLRHKQVRAVLAALEREGLVQQESISDVIGGTRMSNYWYIDYRRAVDSIRLRIYLMQKRLKDMESKALLDTTYECPQCQATYDLLAVQQLRNAANSFCCSHCCDQDEHSLCGPAPYMLVDQNNRGRLEAFECGRHELNEQL--RRSTSADCPREGIFELLSELRDAAVPSTLPSELRARGVGG 663
            +RL+ AV RAFY D  +VV+DAL+R +++KD   ++  R+ +  KQ R +L  L  E L++ E + D + G R   ++YID+    + +R RI+LM + L+ ME +A  + TYECP C     LL VQ LRN    FCC  CC  + H+ C  + + L  ++     E  +  + ++  Q+    S ++  P +GI+ LLS L    +PS LPSEL A GVGG
Sbjct:   37 KRLVRAVARAFYADDTVVVLDALVRGRHVKDT--DIDTRLGVGAKQARRLLTELLEERLIKTEDVVDELTGKR-ELFYYIDFSHFTNVVRYRIHLMHRELERMEREANDNQTYECPVCGRALPLLEVQPLRNKRYGFCCPTCCLSELHATCEGSQWQLRPKSGVTGFEEVQALKEKMRAQMYGAASETSAAPHDGIYNLLSALEHKPLPSNLPSELIAVGVGG 256          
BLAST of mRNA_P-wetherbeei_contig7163.5.1 vs. uniprot
Match: A0A482S8Q7_9ARCH (HTH TFE/IIEalpha-type domain-containing protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482S8Q7_9ARCH)

HSP 1 Score: 140 bits (353), Expect = 9.660e-35
Identity = 78/214 (36.45%), Postives = 126/214 (58.88%), Query Frame = 1
Query:    1 ERLMTAVVRAFYEDPYIVVVDALIREKYLKDKEEELGARVNLRHKQVRAVLAALEREGLVQQESISDVIGGTRMSNYWYIDYRRAVDSIRLRIYLMQKRLKDMESKALLDTTYECPQCQATYDLLAVQQLRNAANSFCCSHCCDQDEHSLCGPAPYM-LVDQNNRGRLEAFECGRHELNEQLRRSTSADCPREGIFELLSELRDAAVPSTLPSE 639
            E+L+  + RAFY D  +VV+DAL+REKYL D+  E+G R+ +  K VR V+  LE E L++ E +  +  G    + +Y+DY+  V+ +R R++LMQ+RL   ES  L +  Y+CP C+  +  L   +L ++ + F CSHCC  +        PY  L++ +NR ++ + +  + +++EQ  +         GIFELLS+L+D  +P  LPSE
Sbjct:   14 EQLIATIARAFYPDDVVVVLDALVREKYLIDR--EIGPRLKMSEKDVRKVINQLETEMLIKAEDVP-LGDGASFWHCYYVDYQVFVNIVRYRVFLMQQRLNKQESSELSEVQYKCPTCKNVFSSLDALKLLSSDHKFICSHCCPHENCRTLPAEPYFTLIEIDNRRKISSLQTQQKKMSEQFCKDKDLHL---GIFELLSKLKDVQLPHNLPSE 221          
BLAST of mRNA_P-wetherbeei_contig7163.5.1 vs. uniprot
Match: A0A3M6V7C5_9STRA (HTH TFE/IIEalpha-type domain-containing protein n=2 Tax=Peronospora effusa TaxID=542832 RepID=A0A3M6V7C5_9STRA)

HSP 1 Score: 137 bits (346), Expect = 2.930e-33
Identity = 127/348 (36.49%), Postives = 187/348 (53.74%), Query Frame = 1
Query:    1 ERLMTAVVRAFYEDPYIVVVDALIREKYLKDKEEELGARVNLRHKQVRAVLAALEREGLVQQESISDV-IGGTRMSNYWYIDYRRAVDSIRLRIYLMQKRLKDMESKALLDTTYEC--PQCQATYDLLAVQQLRNAAN-SFCCSHCCDQDEHSLCGPAPYMLVDQNNRGRLEAFECGRHELNEQLRRSTSADCPREGIFELLSEL-----RDAAVPSTLPSELRARGVGGAYGQGXXXXXXXXXXXXXXXXXXXXXXXXXAGPSVSGQRMEVLYAHNAAGQEIVVEIEEDSDAEEERDEALVGVLPNNALRKRKAELAKAEQAAAAVKKIKVAPQFLLGSRIAGGAAA 1017
            E+L+  V RAFY D ++VV+ ALIREK++KD  +E+G  VNL+ +QVR ++  L ++ LV +E ++D   GG+  ++YWYIDY+  VD ++ R+Y+M + LKD E   +   T++C  P+C   Y  L  Q L       F C HC +            +L++ +N  RLE  +  +H+  +Q+ +    D   EGI+E+L  +        A+P+ LPS+ RA G+GG   +     XXXXXXXXXXXXXX       +           LY + A  QEI+V+I  +  AE   DE L         R RK +   A Q  AA + +   P+FLLGS I+G  AA
Sbjct:    6 EKLVKLVGRAFYSDEHVVVLGALIREKFMKD--DEMGNAVNLQTRQVRKIMNELHQDNLVCEEVLNDKRSGGSSSTSYWYIDYKYFVDVVQYRLYMMHEHLKDSEQLEIERQTFQCSDPECGREYTALEAQLLLMPGQFQFRCGHCNE------------LLLECDNNDRLERIQNLQHKFKDQMNKQ---DGMHEGIYEVLRRIGGFVKEGHALPTNLPSDNRAAGIGGNSARAANAAXXXXXXXXXXXXXXNRADEENS--------QSYLYPYGAQDQEIIVDIAGNDQAE---DEYLTS-------RDRKEDKEAANQKIAAPRAL---PEFLLGSSISGHMAA 315          
BLAST of mRNA_P-wetherbeei_contig7163.5.1 vs. uniprot
Match: A0A8K1C2Y0_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1C2Y0_PYTOL)

HSP 1 Score: 136 bits (342), Expect = 1.170e-32
Identity = 86/230 (37.39%), Postives = 133/230 (57.83%), Query Frame = 1
Query:    1 ERLMTAVVRAFYEDPYIVVVDALIREKYLKDKEEELGARVNLRHKQVRAVLAALEREGLVQQESISDV-IGGTRMSNYWYIDYRRAVDSIRLRIYLMQKRLKDMESKALLDTTYECPQ--CQATYDLLAVQQLRNAAN-SFCCSHCCDQDEHSLCGPAPYMLVDQNNRGRLEAFECGRHELNEQLRRSTSADCPREGIFELLSELRDAA-----VPSTLPSELRARGVGG 663
            E+L+  + RAFY D ++VV+ ALIREK+LKD  +E+G  VNL+ +QVR ++  L ++ LV +E ++D  +GG+  ++YWYIDY+  V+ ++ R+Y+MQ+ LK+ E   +   TY+C    C   Y  L VQ+L       F C HC +            +L++ +N  RLE  +    +L +Q+ R       REGIFE+L  + D       +P+ LPSE RA G+GG
Sbjct:   18 EKLVNLIGRAFYADEHVVVLQALIREKFLKD--DEMGNAVNLQTRQVRKIMNELHQDMLVCEEVLNDKRLGGSSSTSYWYIDYKYFVEVVQYRLYVMQEHLKENEKLEIERQTYQCKNSDCGREYTALEVQRLLMPGQFQFRCGHCNE------------VLLECDNNDRLEKIQALDRKLKDQMNRQAGM---REGIFEVLKRINDYVKEGNVLPTNLPSENRAAGIGG 230          
BLAST of mRNA_P-wetherbeei_contig7163.5.1 vs. uniprot
Match: K3WPK9_GLOUD (HTH TFE/IIEalpha-type domain-containing protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WPK9_GLOUD)

HSP 1 Score: 133 bits (334), Expect = 1.210e-31
Identity = 128/348 (36.78%), Postives = 188/348 (54.02%), Query Frame = 1
Query:    1 ERLMTAVVRAFYEDPYIVVVDALIREKYLKDKEEELGARVNLRHKQVRAVLAALEREGLVQQESISDV-IGGTRMSNYWYIDYRRAVDSIRLRIYLMQKRLKDMESKALLDTTYEC--PQCQATYDLLAVQQLRNAAN-SFCCSHCCDQDEHSLCGPAPYMLVDQNNRGRLEAFECGRHELNEQLRRSTSADCPREGIFELLSELRDAA-----VPSTLPSELRARGVGGAYGQGXXXXXXXXXXXXXXXXXXXXXXXXXAGPSVSGQRMEVLYAHNAAGQEIVVEIEEDSDAEEERDEALVGVLPNNALRKRKAELAKAEQAAAAVKKIKVAPQFLLGSRIAGGAAA 1017
            E+L+  V +AFY D ++VV+ ALIREK+LKD  +E+G+ VNL+ +QVR ++  L ++ LV +E ++D  +GG+  ++YWYIDY+  VD ++ R+Y+M + LKD E   +   T++C  P C   Y  L  Q L       F C HC +             L++ +N  RLE  +  + +  +Q+ +        EGI+E+L  + D       +P+ LPSE RA G+GG   +          XXXXX XXXXXXXXX A    S      LY + A  QEI+V+I  +  AE   DE L+        RKRKAE    ++ A   K  +  P+FL+GS I+G  AA
Sbjct:    6 EKLVHLVGQAFYSDEHVVVLRALIREKFLKD--DEMGSAVNLQTRQVRKIMNELHQDHLVCEEVLNDKRLGGSSSTSYWYIDYKYFVDVVQYRLYVMHEHLKDSEQLEIERQTFQCKDPDCGREYTALEAQLLLMPGQFQFRCGHCNEP------------LLECDNNDRLEKIQSLQRKFKDQMNKQAGM---HEGIYEVLRRIGDFVKEGHILPTNLPSENRAAGLGGNSVRAGAAGGGRAGXXXXXNXXXXXXXXXGADGKNS---QSYLYPYGAQDQEIIVDIAGNDHAE---DEYLMD-------RKRKAEDDVTDRPA---KGPRALPEFLMGSSISGHMAA 320          
BLAST of mRNA_P-wetherbeei_contig7163.5.1 vs. uniprot
Match: D0NAI4_PHYIT (HTH TFE/IIEalpha-type domain-containing protein n=27 Tax=Phytophthora TaxID=4783 RepID=D0NAI4_PHYIT)

HSP 1 Score: 132 bits (333), Expect = 1.790e-31
Identity = 133/348 (38.22%), Postives = 193/348 (55.46%), Query Frame = 1
Query:    1 ERLMTAVVRAFYEDPYIVVVDALIREKYLKDKEEELGARVNLRHKQVRAVLAALEREGLVQQESISDV-IGGTRMSNYWYIDYRRAVDSIRLRIYLMQKRLKDMESKALLDTTYEC--PQCQATYDLLAVQQLRNAAN-SFCCSHCCDQDEHSLCGPAPYMLVDQNNRGRLEAFECGRHELNEQLRRSTSADCPREGIFELLSELRDAA-----VPSTLPSELRARGVGGAYGQGXXXXXXXXXXXXXXXXXXXXXXXXXAGPSVSGQRMEVLYAHNAAGQEIVVEIEEDSDAEEERDEALVGVLPNNALRKRKAELAKAEQAAAAVKKIKVAPQFLLGSRIAGGAAA 1017
            E+L+  V RAFY D ++VV+ ALIREK++KD  +E+G  VNL+ +QVR ++  L ++ LV +E ++D  +GG+  ++YWYIDY+  VD ++ R+YLM + LKD E   +   T++C  P+C   Y  L  Q L       F C HC +            +L++ +N  RL   +  + +  +Q+ +        EGI+E+L  + D       +P+ LPS+ RA G+GG   + XXXXXXXXXXXXXXXXXXXXXX      S        LY + A  QEI+V+I  +  AE   DE L         R+RK +   A Q  AA + +   P+FL GS I+G  AA
Sbjct:    6 EKLVNIVGRAFYSDEHVVVLSALIREKFMKD--DEMGNAVNLQTRQVRKIMNELHQDNLVCEEVLNDKRLGGSSSTSYWYIDYKYFVDVVQYRLYLMHEHLKDSEQLEIERQTFQCSDPECGREYTALEAQLLLMPGQYQFRCGHCNE------------LLLECDNNDRLLRVQSLQRKFKDQMNKQNGL---HEGIYEVLRRIGDFVKEGHVLPNNLPSDNRAAGLGGNSARAXXXXXXXXXXXXXXXXXXXXXXDDQNSQSY-------LYPYGAQDQEIIVDIAGNDQAE---DEYLTS-------RERKEDKEAASQQVAAPRAL---PEFLQGSSISGHMAA 316          
BLAST of mRNA_P-wetherbeei_contig7163.5.1 vs. uniprot
Match: A0A7S3Y5E8_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y5E8_HETAK)

HSP 1 Score: 127 bits (320), Expect = 4.970e-31
Identity = 87/231 (37.66%), Postives = 116/231 (50.22%), Query Frame = 1
Query:    1 ERLMTAVVRAFYEDPYIVVVDALIREKYLKDKEEELGARVNLRHKQVRAVLAALEREGLVQQESISDVIGGTRMSNYWYIDYRRAVDSIRLRIYLMQKRLKDMESKALLDTTYECPQCQATYDLLAVQQLRNAANSFCCSHCCDQDEHSLCG----PAPYMLVDQNNRGRLEAFECGRHELNEQLRRSTSADCPR-EGIFELLSELRDA------AVPSTLPSELRARGVG 660
            ERL   VVRAFY+D  ++V+D LIR + ++D   +LG    L  KQVR  +  L+ E L   E  SD   G R S YW+++YRR V ++  R +  Q+ L+  E K     TY C  C   + LL VQ+L N    FCCSHCC  D H+ CG    P  + L +       E        L  QL  +      R +G+ +LL  LRD       A+P+ LPSE   RGVG
Sbjct:   10 ERLAGTVVRAFYDDELVMVMDMLIRHRQIRDA--DLGVVTGLAPKQVRKAVQRLQAEKLCDFEKASDDAQG-RASVYWFVNYRRLVLAVTWRCHRAQQVLEARERKEQERQTYVCEACALQFTLLEVQRLANGGRGFCCSHCCPYDTHAGCGRDGRPTSFPLKEVAAGDGAERARRALRRLRRQLSAAPGGGAWRPDGVLDLLKALRDLQARERLALPTNLPSENFRRGVG 237          
BLAST of mRNA_P-wetherbeei_contig7163.5.1 vs. uniprot
Match: A0A7S0CBM9_9STRA (Hypothetical protein (Fragment) n=1 Tax=Proboscia inermis TaxID=420281 RepID=A0A7S0CBM9_9STRA)

HSP 1 Score: 126 bits (317), Expect = 1.450e-29
Identity = 99/294 (33.67%), Postives = 148/294 (50.34%), Query Frame = 1
Query:    1 ERLMTAVVRAFYEDPYIVVVDALIREKYLKDKEEELGARVNLRHKQVRAVLAALEREGLVQQESISDV-IGGTRMSNYWYIDYRRAVDSIRLRIYLMQKRLKDMESKALLDTTYECP-----QCQATYDLLAVQQLRNAANS-FCCSHC----CDQDEHSLCGPAPYMLVDQNNRGRLEAFECGRHELNEQLRRST-SADCPREGIFELLSELRDAA---VPSTLPSELRARGVGGAYGQGXXXXXXXXXXXXXXXXXXXXXXXXXAGPSVSGQRMEVLYAHNAAGQEIVVEIE 837
            E L+ AVVRAFYED  + ++D L+R+KYL+D  +++G R++L  K+VRA L  LE E LV+ E + D+  GG++ + YWYID+  AV+ IRLRIYL++K+ K+ E +AL  + Y CP      C   Y     QQL +     F C  C    C+  E          L+D  N+  L A +     +  QL   T  A   R GI++LL ++R  +   + S LPSE  + G+G    +G                          G S S +  ++ +  NA G+E+  E+E
Sbjct:    9 EALIAAVVRAFYEDDAVSLIDVLLRDKYLRD--DDMGPRLSLPVKKVRATLQHLELEHLVKFELVDDLSTGGSQATKYWYIDFNHAVNVIRLRIYLLEKKQKEAEIRALSSSMYLCPGYKTKACNGRYTETEAQQLVHPETGLFLCQECLQTHCNNPEPPPMSTYTLELID--NKKDLTAAQNNMRRVRVQLGSKTVGAQQLRVGIYDLLQKVRQGSKGPLSSNLPSENISFGIGSTRLEGTGRTAGLKAKKLKEQGGFNKLE----GASRSEEGSDLNFLKNARGEEVAFEVE 294          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig7163.5.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A836CC40_9STRA2.230e-7040.74TFIIE alpha subunit-domain-containing protein n=1 ... [more]
A0A6H5LCE2_9PHAE7.930e-6043.55HTH TFE/IIEalpha-type domain-containing protein n=... [more]
A0A4D9CU86_9STRA7.490e-3537.67HTH TFE/IIEalpha-type domain-containing protein n=... [more]
A0A482S8Q7_9ARCH9.660e-3536.45HTH TFE/IIEalpha-type domain-containing protein n=... [more]
A0A3M6V7C5_9STRA2.930e-3336.49HTH TFE/IIEalpha-type domain-containing protein n=... [more]
A0A8K1C2Y0_PYTOL1.170e-3237.39Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
K3WPK9_GLOUD1.210e-3136.78HTH TFE/IIEalpha-type domain-containing protein n=... [more]
D0NAI4_PHYIT1.790e-3138.22HTH TFE/IIEalpha-type domain-containing protein n=... [more]
A0A7S3Y5E8_HETAK4.970e-3137.66Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A7S0CBM9_9STRA1.450e-2933.67Hypothetical protein (Fragment) n=1 Tax=Proboscia ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig7163contigP-wetherbeei_contig7163:2054..3124 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog67593.Physo139578
PFAMsTFIIE_alpha
Model size1017
Max annot lvl4776|Peronosporales
KEGG koko:K03136
KEGG Pathwayko03022,ko05169,ko05203,map03022,map05169,map05203
Hectar predicted targeting categoryother localisation
Exons2
Evalue5.45e-32
EggNOG OGsCOG1675@1|root,KOG2593@2759|Eukaryota,3QAMM@4776|Peronosporales
DescriptionTFIIE alpha subunit
Cds size1008
COG categoryK
BRITEko00000,ko00001,ko03021
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186962.8087018-UTR-P-wetherbeei_contig7163:2053..20621683186962.8087018-UTR-P-wetherbeei_contig7163:2053..2062Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig7163 2054..2062 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186962.8187814-CDS-P-wetherbeei_contig7163:2062..27171683186962.8187814-CDS-P-wetherbeei_contig7163:2062..2717Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig7163 2063..2717 +
1683186962.827039-CDS-P-wetherbeei_contig7163:2771..31241683186962.827039-CDS-P-wetherbeei_contig7163:2771..3124Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig7163 2772..3124 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig7163.5.1prot_P-wetherbeei_contig7163.5.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig7163 2063..3124 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig7163.5.1

>prot_P-wetherbeei_contig7163.5.1 ID=prot_P-wetherbeei_contig7163.5.1|Name=mRNA_P-wetherbeei_contig7163.5.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=336bp
MTAVVRAFYEDPYIVVVDALIREKYLKDKEEELGARVNLRHKQVRAVLAA
LEREGLVQQESISDVIGGTRMSNYWYIDYRRAVDSIRLRIYLMQKRLKDM
ESKALLDTTYECPQCQATYDLLAVQQLRNAANSFCCSHCCDQDEHSLCGP
APYMLVDQNNRGRLEAFECGRHELNEQLRRSTSADCPREGIFELLSELRD
AAVPSTLPSELRARGVGGAYGQGGGAAGGGGGGGGGAAAGGNGGRGGGAG
PSVSGQRMEVLYAHNAAGQEIVVEIEEDSDAEEERDEALVGVLPNNALRK
RKAELAKAEQAAAAVKKIKVAPQFLLGSRIAGGAAA
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mRNA from alignment at P-wetherbeei_contig7163:2054..3124+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig7163.5.1 ID=mRNA_P-wetherbeei_contig7163.5.1|Name=mRNA_P-wetherbeei_contig7163.5.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1071bp|location=Sequence derived from alignment at P-wetherbeei_contig7163:2054..3124+ (Phaeothamnion wetherbeei SAG_119_79)
GAGCGCCTGATGACCGCCGTGGTGCGCGCCTTTTACGAGGATCCCTACAT TGTCGTCGTGGATGCGCTGATCCGCGAGAAATATCTCAAAGACAAGGAGG AGGAGCTGGGAGCGCGGGTGAACCTGCGGCACAAGCAGGTGCGCGCCGTG CTCGCGGCGCTCGAGCGGGAGGGCCTCGTGCAGCAGGAGAGCATCAGCGA CGTCATCGGCGGCACCCGCATGTCCAACTACTGGTACATCGACTACCGCC GCGCCGTCGACTCCATCCGCCTGCGCATCTATTTGATGCAGAAGCGGCTC AAGGACATGGAAAGCAAGGCGCTCCTGGACACGACGTACGAGTGCCCGCA GTGCCAAGCCACCTACGACCTGCTCGCCGTCCAGCAACTGCGCAATGCCG CTAACAGCTTCTGCTGCAGCCACTGCTGCGACCAAGACGAGCACTCACTC TGCGGGCCCGCCCCATACATGCTCGTCGACCAAAACAACCGGGGCCGTCT CGAGGCGTTTGAGTGTGGCCGCCACGAACTCAACGAGCAGCTGCGGCGCA GCACCAGCGCCGACTGCCCGCGGGAGGGCATCTTCGAGCTTTTGAGCGAG CTGCGCGACGCCGCCGTGCCAAGCACACTGCCCAGCGAGCTCCGGGCGCG CGGCGTCGGCGGCGGTTTCGGCCACGGCGCCGTGCAGCACGCGCGGTTCC GGGACGGCTCCGAAGTAGCGTACGGGCAGGGCGGCGGCGCGGCGGGCGGC GGCGGCGGTGGCGGCGGTGGCGCCGCGGCGGGCGGAAACGGCGGCCGTGG TGGCGGGGCTGGGCCCAGCGTCAGCGGACAGCGGATGGAAGTGCTGTACG CTCACAACGCGGCGGGGCAGGAGATCGTCGTGGAGATCGAGGAAGACAGC GACGCAGAGGAGGAGCGGGACGAGGCGCTGGTGGGCGTCCTGCCAAACAA CGCGTTGCGGAAGCGGAAGGCCGAGCTGGCCAAGGCGGAGCAGGCGGCAG CCGCGGTCAAAAAGATCAAAGTAGCGCCGCAATTCCTGCTGGGCAGCAGA ATCGCCGGCGGCGCGGCGGCG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig7163:2054..3124+

>mRNA_P-wetherbeei_contig7163.5.1 ID=mRNA_P-wetherbeei_contig7163.5.1|Name=mRNA_P-wetherbeei_contig7163.5.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=1008bp|location=Sequence derived from alignment at P-wetherbeei_contig7163:2054..3124+ (Phaeothamnion wetherbeei SAG_119_79)
ATGACCGCCGTGGTGCGCGCCTTTTACGAGGATCCCTACATTGTCGTCGT
GGATGCGCTGATCCGCGAGAAATATCTCAAAGACAAGGAGGAGGAGCTGG
GAGCGCGGGTGAACCTGCGGCACAAGCAGGTGCGCGCCGTGCTCGCGGCG
CTCGAGCGGGAGGGCCTCGTGCAGCAGGAGAGCATCAGCGACGTCATCGG
CGGCACCCGCATGTCCAACTACTGGTACATCGACTACCGCCGCGCCGTCG
ACTCCATCCGCCTGCGCATCTATTTGATGCAGAAGCGGCTCAAGGACATG
GAAAGCAAGGCGCTCCTGGACACGACGTACGAGTGCCCGCAGTGCCAAGC
CACCTACGACCTGCTCGCCGTCCAGCAACTGCGCAATGCCGCTAACAGCT
TCTGCTGCAGCCACTGCTGCGACCAAGACGAGCACTCACTCTGCGGGCCC
GCCCCATACATGCTCGTCGACCAAAACAACCGGGGCCGTCTCGAGGCGTT
TGAGTGTGGCCGCCACGAACTCAACGAGCAGCTGCGGCGCAGCACCAGCG
CCGACTGCCCGCGGGAGGGCATCTTCGAGCTTTTGAGCGAGCTGCGCGAC
GCCGCCGTGCCAAGCACACTGCCCAGCGAGCTCCGGGCGCGCGGCGTCGG
CGGCGCGTACGGGCAGGGCGGCGGCGCGGCGGGCGGCGGCGGCGGTGGCG
GCGGTGGCGCCGCGGCGGGCGGAAACGGCGGCCGTGGTGGCGGGGCTGGG
CCCAGCGTCAGCGGACAGCGGATGGAAGTGCTGTACGCTCACAACGCGGC
GGGGCAGGAGATCGTCGTGGAGATCGAGGAAGACAGCGACGCAGAGGAGG
AGCGGGACGAGGCGCTGGTGGGCGTCCTGCCAAACAACGCGTTGCGGAAG
CGGAAGGCCGAGCTGGCCAAGGCGGAGCAGGCGGCAGCCGCGGTCAAAAA
GATCAAAGTAGCGCCGCAATTCCTGCTGGGCAGCAGAATCGCCGGCGGCG
CGGCGGCG
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