mRNA_P-wetherbeei_contig7128.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig7128.2.1
Unique NamemRNA_P-wetherbeei_contig7128.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig7128.2.1 vs. uniprot
Match: A0A0G4J6S4_PLABS (Uncharacterized protein n=2 Tax=Plasmodiophora brassicae TaxID=37360 RepID=A0A0G4J6S4_PLABS)

HSP 1 Score: 84.0 bits (206), Expect = 1.040e-15
Identity = 66/168 (39.29%), Postives = 88/168 (52.38%), Query Frame = 1
Query:    1 AISASGTATELRATLDGARYVSPPDWNAAARGFDRVNARVRAQNATGLAIGGADAAAHINVTAVDDPPIITGPSAVTATEDRPVAVT-GVRVSDVDADETPGVVVEVFVNAAHGNVVIDASVPGLYVVETNSSHIRFQAALLAANAALAGLIYTGAKDWSGRDELLVS 501
            A++A G  T LRA L    YV  P WN    G D V   V   +    ++        +NVT VD  P++T  +++T  ED PV VT GV  + V      GVV +V V   +G++ + A+  GLYV    SS I+F+A + A NAAL  L YT A DWSG D L V+
Sbjct:  293 ALTAWGNQTMLRARLSHVVYVPAPAWNTWQDGLDHVTLAVTDGHGASGSL-----TVDVNVTYVDQAPVVTVAASLTTNEDAPVRVTIGVSDASVAQSSGNGVVGQVVVQVGNGSLSLRATA-GLYVRRQTSSTIQFEADMTAMNAALDPLTYTPAADWSGVDTLHVA 454          
BLAST of mRNA_P-wetherbeei_contig7128.2.1 vs. uniprot
Match: D7G6U7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G6U7_ECTSI)

HSP 1 Score: 82.0 bits (201), Expect = 5.020e-15
Identity = 58/160 (36.25%), Postives = 89/160 (55.62%), Query Frame = 1
Query:   16 GTATELRATLDGARYVSPPDWNAAARG-FDRVNARVRAQNAT--GLAIGGADAAAHINVTAVDDPPIITGPSAVTATEDRPVAVTGVRVSDVDADETPGVVVEVFVNAAH--GNVVIDASVPGLYVVETNSSHIRFQAALLAANAALAGLIYTGAKDWSG 480
            GT  E+ A L    Y +PPDWN+  +  F+ ++  V  Q++   G    G      + +  ++DPP++ GPS  TA E R   + G+ VSDVDA +T G V+EV V+AA    NV + A + GL++  ++     FQ ++   N ALAGL + GA ++SG
Sbjct:   93 GTQDEINAALLNVWYSAPPDWNSLGQDTFEALSVLVDEQDSAQGGDPYPGVPRTLIVLIAPINDPPLLRGPSEFTAVEGRTTVLGGIEVSDVDAQDTTGSVLEVTVSAAEKGSNVELGAKL-GLFIKNSSDESKTFQGSVTNINKALAGLTFRGAFEFSG 251          
BLAST of mRNA_P-wetherbeei_contig7128.2.1 vs. uniprot
Match: A0A6H5KBW5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBW5_9PHAE)

HSP 1 Score: 81.6 bits (200), Expect = 6.840e-15
Identity = 59/159 (37.11%), Postives = 89/159 (55.97%), Query Frame = 1
Query:   16 GTATELRATLDGARYVSPPDWNAAARG-FDRVNARVRAQNAT--GLAIGGADAAAHINVTAVDDPPIITGPSAVTATEDRPVAVTGVRVSDVDADETPGVVVEVFVNAAH-GNVVIDASVPGLYVVETNSSHIRFQAALLAANAALAGLIYTGAKDWSG 480
            GT  E+ A L    Y +PPDWN+  +  F+ ++  V  Q++   G    G      + VT V+DPP++ GPS  TA E R   + G++V DVDA +T G V+EV V+AA  G+ V   +  GL++  ++     FQ ++   N ALAGL + GA ++SG
Sbjct:   76 GTQDEINAALLNVWYSAPPDWNSLGQDTFETLSVLVDEQDSAQGGDPYPGVPRTLVVLVTPVNDPPLLRGPSEFTAVEGRTTVLGGIKVFDVDAQDTAGSVLEVTVSAAEKGSSVELGAKLGLFIKNSSDESKTFQGSVTNINNALAGLTFRGAFEFSG 234          
BLAST of mRNA_P-wetherbeei_contig7128.2.1 vs. uniprot
Match: A0A7S1CA18_9STRA (Hypothetical protein (Fragment) n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1CA18_9STRA)

HSP 1 Score: 57.4 bits (137), Expect = 1.570e-6
Identity = 60/175 (34.29%), Postives = 82/175 (46.86%), Query Frame = 1
Query:   22 ATELRATLDGARYVSPPDWNAAARGFDRVNARVRAQNATGLAIGGADAAAH---INVTAVDDPPIITGPS--AVTATEDRPVAVTGVRVSDVDADETPGVVVEVFVNAAHGNVVIDASVPGLYVVETNS---------------SHIRFQAALLAANAALAGLIYTGAKDWSGRD 486
            A  L A L   RY    DW+    G D ++  V  Q  +G   GGA AA+    I VT ++D P I  P+  +V   ED    + G+ VSDVDAD  P   +E  ++ A G +++ +S  G+ VV  +                +    QA L    AALAGL Y GA DW+G D
Sbjct:  568 AARLNAALAAVRYTPERDWH----GADTLDVVVDDQGHSGA--GGALAASTSVAITVTPINDAPTIATPAPYSVVLDEDGEAVLRGLSVSDVDAD--PNRAMEATLSCARGVLLLSSS-EGVRVVVADGGGGSISAADAAASGFASATIQATLADMQAALAGLHYLGASDWTGWD 733          
BLAST of mRNA_P-wetherbeei_contig7128.2.1 vs. uniprot
Match: A0A2S8Z1A3_9PSED (Adhesin n=2 Tax=Pseudomonas TaxID=286 RepID=A0A2S8Z1A3_9PSED)

HSP 1 Score: 57.4 bits (137), Expect = 1.710e-6
Identity = 45/145 (31.03%), Postives = 66/145 (45.52%), Query Frame = 1
Query:  115 RVRAQNATGLAIGGADAAAHINVTAVD--------------DPPIITGPSAVTATEDRPVAVTGVRVSDVDADETPGV---VVEVFVNAAHGNVVIDASVPGLYVVETNSSHIRFQAALLAANAALAGLIYTGAKDWSGRDELLV 498
            RVR  +    A+G       INVT  D              D P+   P      ED P+A+TG+ VSD DAD  P +    + + +N  HG + +  +  G+ V  +NS+ +     L   N ALA L+Y G  +++G D L V
Sbjct: 1949 RVRIDSDADTAVG------QINVTLADAGTGIADAGFVEQNDAPVNNLPGTQNGQEDIPLAITGISVSDADADRDPAINDRTLTITLNVLHGTLSLSTTPSGVTVTGSNSASMTLTGNLADLNLALANLMYLGNANFNGTDTLTV 2087          
BLAST of mRNA_P-wetherbeei_contig7128.2.1 vs. uniprot
Match: A0A5P1DSW4_9PSED (DUF4347 domain-containing protein n=3 Tax=Pseudomonas TaxID=286 RepID=A0A5P1DSW4_9PSED)

HSP 1 Score: 56.6 bits (135), Expect = 3.160e-6
Identity = 36/106 (33.96%), Postives = 58/106 (54.72%), Query Frame = 1
Query:  190 VDDPPIITGPSAVTATEDRPVAVTGVRVSDVDADETPGVV---VEVFVNAAHGNVVIDASVPGLYVVETNSSHIRFQAALLAANAALAGLIYTGAKDWSGRDELLV 498
            ++D P+ T P      ED P+A++G+ VSD+DA+  P V    +EV +N  HG + +     G+ V    ++++     +   NAALAG+ Y G  D++G D L V
Sbjct: 2016 LNDAPVNTLPGFQQGREDTPLAISGISVSDIDAERDPVVASRAIEVNLNVLHGTLTLTGPTTGVTVTGAGTTNLVLLGRIADINAALAGVSYLGNLDFNGVDFLEV 2121          
BLAST of mRNA_P-wetherbeei_contig7128.2.1 vs. uniprot
Match: UPI000EAA6ACA (VCBS domain-containing protein n=1 Tax=Pseudomonas sp. DY-1 TaxID=1755504 RepID=UPI000EAA6ACA)

HSP 1 Score: 56.6 bits (135), Expect = 3.160e-6
Identity = 36/106 (33.96%), Postives = 58/106 (54.72%), Query Frame = 1
Query:  190 VDDPPIITGPSAVTATEDRPVAVTGVRVSDVDADETPGVV---VEVFVNAAHGNVVIDASVPGLYVVETNSSHIRFQAALLAANAALAGLIYTGAKDWSGRDELLV 498
            ++D P+ T P      ED P+A++G+ VSD+DA+  P V    +EV +N  HG + +     G+ V    ++++     +   NAALAG+ Y G  D++G D L V
Sbjct: 2018 LNDAPVNTLPGFQQGREDTPLAISGISVSDIDAERDPVVASRAIEVNLNVLHGTLTLTGPTTGVTVTGAGTTNLVLLGRIADINAALAGVSYLGNLDFNGVDFLEV 2123          
BLAST of mRNA_P-wetherbeei_contig7128.2.1 vs. uniprot
Match: UPI000A5E8119 (VCBS domain-containing protein n=2 Tax=unclassified Pseudomonas TaxID=196821 RepID=UPI000A5E8119)

HSP 1 Score: 55.8 bits (133), Expect = 5.810e-6
Identity = 43/136 (31.62%), Postives = 66/136 (48.53%), Query Frame = 1
Query:  115 RVRAQNATGLAIG--------GADAAAHINVTAVDDPPIITGPSAVTATEDRPVAVTGVRVSDVDADETPGVVVEVFVNAAHGNVVIDASVPGLYVVETNSSHIRFQAALLAANAALAGLIYTGAKDWSGRDELLV 498
            RVR  +  G A+G        G+ A A      ++D P+   P      ED P+A+ G+RVSDVD       ++++ ++  HG + + A   G+ VV   S  +     L A N ALA L+Y G  +++G D L V
Sbjct: 1951 RVRIDSDAGSALGRIDINLGEGSSANADAGFVQLNDAPVNQLPGTQNGFEDTPLAIGGIRVSDVDIGNG---IMDITLSVLHGTLSLSALPAGVSVVGNGSGTLSLSGNLTALNQALANLVYLGNANFNGIDTLTV 2083          
BLAST of mRNA_P-wetherbeei_contig7128.2.1 vs. uniprot
Match: UPI0008396B73 (DUF4347 domain-containing protein n=1 Tax=Magnetospirillum marisnigri TaxID=1285242 RepID=UPI0008396B73)

HSP 1 Score: 55.5 bits (132), Expect = 7.880e-6
Identity = 43/129 (33.33%), Postives = 71/129 (55.04%), Query Frame = 1
Query:  130 NATGLAIGGADAAAH---INVTAVDDPPIITGPSAVTATEDRPVAVTGVRVSDVDADETPGVVVEVFVNAAHGNVVIDASVPGLYVVE--TNSSHIRFQAALLAANAALAGLIYTGAKDWSGRDELLVS 501
            +A G   GGA  A+    +N+TA++D P++T P A +  ED  ++++G+ V+D D+       V+V +  A+G + + AS+ GL V      S+ +         N AL GL Y G  D++G D+L+VS
Sbjct: 2159 SAAGQGTGGALTASGSVTVNITAINDAPVVTVPGARSVNEDTGLSLSGLGVADADSSANA---VDVTLKVANGTLSL-ASLSGLTVTSGSNGSAAMVLHGTAADINTALGGLTYQGRTDFNGSDQLVVS 2283          
BLAST of mRNA_P-wetherbeei_contig7128.2.1 vs. uniprot
Match: A0A8G0SMA5_9PSED (VCBS domain-containing protein n=3 Tax=unclassified Pseudomonas TaxID=196821 RepID=A0A8G0SMA5_9PSED)

HSP 1 Score: 54.3 bits (129), Expect = 1.970e-5
Identity = 38/125 (30.40%), Postives = 67/125 (53.60%), Query Frame = 1
Query:  139 GLAIG-GADAAAHINVTAVDDPPIITGPSAVTATEDRPVAVTGVRVSDVDADETPGV---VVEVFVNAAHGNVVIDASVPGLYVVETNSSHIRFQAALLAANAALAGLIYTGAKDWSGRDELLVS 501
            G+ +G G+ A A+     ++D P+ + P   +  ED P+A+ G+RVSD+DA+  P V    ++V +   HG + +  +   + V    ++ +     +   NAALAGL Y G  +++G D L V+
Sbjct: 1998 GVTLGEGSTAQANSGYVELNDAPVNSLPGLQSGLEDVPLAIPGIRVSDIDAERDPDVNGRAIQVTLTVTHGTLSLTGTTSSVTVGGNGTATLVLLGRIADINAALAGLSYLGNLNFNGNDFLQVT 2122          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig7128.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 13
Match NameE-valueIdentityDescription
A0A0G4J6S4_PLABS1.040e-1539.29Uncharacterized protein n=2 Tax=Plasmodiophora bra... [more]
D7G6U7_ECTSI5.020e-1536.25Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KBW5_9PHAE6.840e-1537.11Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A7S1CA18_9STRA1.570e-634.29Hypothetical protein (Fragment) n=1 Tax=Bicosoecid... [more]
A0A2S8Z1A3_9PSED1.710e-631.03Adhesin n=2 Tax=Pseudomonas TaxID=286 RepID=A0A2S8... [more]
A0A5P1DSW4_9PSED3.160e-633.96DUF4347 domain-containing protein n=3 Tax=Pseudomo... [more]
UPI000EAA6ACA3.160e-633.96VCBS domain-containing protein n=1 Tax=Pseudomonas... [more]
UPI000A5E81195.810e-631.62VCBS domain-containing protein n=2 Tax=unclassifie... [more]
UPI0008396B737.880e-633.33DUF4347 domain-containing protein n=1 Tax=Magnetos... [more]
A0A8G0SMA5_9PSED1.970e-530.40VCBS domain-containing protein n=3 Tax=unclassifie... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig7128contigP-wetherbeei_contig7128:2539..3039 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D7G6U7
Model size501
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons1
Evalue5.13e-17
EggNOG OGs28IVJ@1|root,2QR77@2759|Eukaryota
Cds size501
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186960.1783454-CDS-P-wetherbeei_contig7128:2538..30391683186960.1783454-CDS-P-wetherbeei_contig7128:2538..3039Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig7128 2539..3039 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig7128.2.1prot_P-wetherbeei_contig7128.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig7128 2539..3039 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig7128.2.1

>prot_P-wetherbeei_contig7128.2.1 ID=prot_P-wetherbeei_contig7128.2.1|Name=mRNA_P-wetherbeei_contig7128.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=167bp
AISASGTATELRATLDGARYVSPPDWNAAARGFDRVNARVRAQNATGLAI
GGADAAAHINVTAVDDPPIITGPSAVTATEDRPVAVTGVRVSDVDADETP
GVVVEVFVNAAHGNVVIDASVPGLYVVETNSSHIRFQAALLAANAALAGL
IYTGAKDWSGRDELLVS
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mRNA from alignment at P-wetherbeei_contig7128:2539..3039+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig7128.2.1 ID=mRNA_P-wetherbeei_contig7128.2.1|Name=mRNA_P-wetherbeei_contig7128.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=501bp|location=Sequence derived from alignment at P-wetherbeei_contig7128:2539..3039+ (Phaeothamnion wetherbeei SAG_119_79)
GCTATAAGCGCTAGCGGGACCGCCACCGAACTCCGTGCGACGTTGGACGG CGCAAGATATGTGTCACCGCCGGACTGGAACGCCGCCGCACGCGGCTTCG ACAGGGTCAACGCCCGTGTTCGAGCGCAGAACGCCACAGGCCTCGCCATT GGCGGCGCCGATGCTGCCGCCCACATTAACGTAACCGCCGTCGATGACCC GCCGATAATCACGGGTCCTTCTGCTGTAACCGCCACGGAAGACCGGCCTG TGGCAGTGACCGGCGTGAGAGTGAGCGATGTCGACGCCGACGAAACGCCG GGCGTGGTCGTGGAAGTTTTCGTGAACGCTGCGCACGGCAATGTGGTTAT CGACGCGTCGGTGCCCGGACTGTACGTGGTAGAAACGAATAGCTCACACA TTCGGTTCCAGGCGGCGCTCCTGGCTGCCAACGCTGCGTTGGCTGGCCTC ATCTACACCGGCGCAAAAGACTGGAGCGGCCGCGACGAGCTGCTGGTGAG T
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Coding sequence (CDS) from alignment at P-wetherbeei_contig7128:2539..3039+

>mRNA_P-wetherbeei_contig7128.2.1 ID=mRNA_P-wetherbeei_contig7128.2.1|Name=mRNA_P-wetherbeei_contig7128.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=501bp|location=Sequence derived from alignment at P-wetherbeei_contig7128:2539..3039+ (Phaeothamnion wetherbeei SAG_119_79)
GCTATAAGCGCTAGCGGGACCGCCACCGAACTCCGTGCGACGTTGGACGG
CGCAAGATATGTGTCACCGCCGGACTGGAACGCCGCCGCACGCGGCTTCG
ACAGGGTCAACGCCCGTGTTCGAGCGCAGAACGCCACAGGCCTCGCCATT
GGCGGCGCCGATGCTGCCGCCCACATTAACGTAACCGCCGTCGATGACCC
GCCGATAATCACGGGTCCTTCTGCTGTAACCGCCACGGAAGACCGGCCTG
TGGCAGTGACCGGCGTGAGAGTGAGCGATGTCGACGCCGACGAAACGCCG
GGCGTGGTCGTGGAAGTTTTCGTGAACGCTGCGCACGGCAATGTGGTTAT
CGACGCGTCGGTGCCCGGACTGTACGTGGTAGAAACGAATAGCTCACACA
TTCGGTTCCAGGCGGCGCTCCTGGCTGCCAACGCTGCGTTGGCTGGCCTC
ATCTACACCGGCGCAAAAGACTGGAGCGGCCGCGACGAGCTGCTGGTGAG
T
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