mRNA_P-wetherbeei_contig7085.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig7085.1.1
Unique NamemRNA_P-wetherbeei_contig7085.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig7085.1.1 vs. uniprot
Match: A0A2D4CD39_PYTIN (Sorting and assembly machinery component 50 n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4CD39_PYTIN)

HSP 1 Score: 75.5 bits (184), Expect = 3.580e-11
Identity = 42/125 (33.60%), Postives = 60/125 (48.00%), Query Frame = 1 
Query:    4 ALGIFERVDVALDVAKGGRPDETDVTVRVKEKGWVQLHAHTGTTFEQDRPVQVEVTGIVCNPTGNGEMLHIGTEQASGLSRAYLVRLLKPRILGAPVSFEATAKADATDRRSHSSFVEQVGMGGF 378
            +L IFE +D  LD A  GR DETDV + VKEKGW +LH    T   ++     E +  + N  G  E +      A   S      + KPR +G P+ F A+A  +  +     S+ E++  G F
Sbjct:   48 SLDIFEEIDFQLDKASSGRKDETDVVITVKEKGWRKLHVGATTDGNEET---AETSCTLVNALGQAEKIKFSASYAYSGSNTERATIEKPRFMGLPLYFHASASNELHNHERLCSYNEKIRGGCF 169
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BLAST of mRNA_P-wetherbeei_contig7085.1.1 vs. uniprot
Match: W7U1Z2_9STRA (Sorting and assembly machinery component 50 putative n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7U1Z2_9STRA)

HSP 1 Score: 70.1 bits (170), Expect = 1.430e-9
Identity = 43/124 (34.68%), Postives = 64/124 (51.61%), Query Frame = 1 
Query:    7 LGIFERVDVALDVAKGGRPDETDVTVRVKEKGWVQLHAHTGTTFEQDRPVQVEVTGIVCNPTGNGEMLHIGTEQASGLSRAYLVRLLKPRILGAPVSFEATAKADATDRRSHSSFVEQVGMGGF 378
            LGIF+ VD+ +  A    P ETD+ ++V EKG     A+TGT+F +D  +  E +G + NPTG+ E L     ++   +R+  V L KPR+ G    F+     D  +    SS  E+V    F
Sbjct:   56 LGIFKGVDIQMQEAASKAPGETDLHIKVIEKG--VFSAYTGTSFTRD-DINFEASGSLRNPTGHAETLEGTYSRSRQGNRSLKVNLGKPRVRGLNTRFDCQIHEDTLNHERTSSLSEKVQAVAF 176
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig7085.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A2D4CD39_PYTIN3.580e-1133.60Sorting and assembly machinery component 50 n=1 Ta... [more]
W7U1Z2_9STRA1.430e-934.68Sorting and assembly machinery component 50 putati... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig7085contigP-wetherbeei_contig7085:49..1910 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size1077
Hectar predicted targeting categoryother localisation
Exons4
Cds size681
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186957.0318542-CDS-P-wetherbeei_contig7085:48..7291683186957.0318542-CDS-P-wetherbeei_contig7085:48..729Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig7085 49..729 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186957.041245-UTR-P-wetherbeei_contig7085:729..8791683186957.041245-UTR-P-wetherbeei_contig7085:729..879Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig7085 730..879 -
1683186957.0499246-UTR-P-wetherbeei_contig7085:1155..12561683186957.0499246-UTR-P-wetherbeei_contig7085:1155..1256Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig7085 1156..1256 -
1683186957.0616286-UTR-P-wetherbeei_contig7085:1514..15701683186957.0616286-UTR-P-wetherbeei_contig7085:1514..1570Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig7085 1515..1570 -
1683186957.0724115-UTR-P-wetherbeei_contig7085:1822..19101683186957.0724115-UTR-P-wetherbeei_contig7085:1822..1910Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig7085 1823..1910 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig7085.1.1prot_P-wetherbeei_contig7085.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig7085 49..729 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig7085.1.1

>prot_P-wetherbeei_contig7085.1.1 ID=prot_P-wetherbeei_contig7085.1.1|Name=mRNA_P-wetherbeei_contig7085.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=227bp
MAPMPAAVVTAGDRRFFSGDAAGGRRRRQAAGTRRGSRERRQGLRLLERM
RPQHVACSGLGSCRLSQLRVGCQAKPDHSWDFFVSLSLLRRLWRQDLVSR
RLCCSSCDAGCRWPALLHPVPSPCFWCWRLHGARRRFDCCPGKFCWFWAA
GLAHASELPSHSAAACSVDADPFFLPFSHLLLLWRWASPHRFLSPGCCPG
VLHSPADTVDRLFGFRQSAVCVNKRAD
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mRNA from alignment at P-wetherbeei_contig7085:49..1910-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig7085.1.1 ID=mRNA_P-wetherbeei_contig7085.1.1|Name=mRNA_P-wetherbeei_contig7085.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1862bp|location=Sequence derived from alignment at P-wetherbeei_contig7085:49..1910- (Phaeothamnion wetherbeei SAG_119_79)
CCAGCCCTGGGAATCTTCGAGAGAGTCGACGTCGCGCTTGACGTCGCAAA
AGGTGGCCGACCGGACGAGACGGACGTCACCGTTCGAGGTCAGACAGCAC
CATCCGCAGCTTCGTTCCACCCCTAGGCGCGTTTCACCCACTTCCCGAGC
CGCATTCTAGGATCGACCTGTCCCCTTTCAAACCGGAGGTGTCCTTTTTG
CAGTGAGTATGATCTTCCGACCGTGCTGCGCACGTAATTCTTGTTGTGTG
TGACATTTGACGATGCCTCCCTCACTTGCCTTTGCCATCCCGTTGGCGGG
CCCTGGTGGCGGGCTCTCGTGACGCGACACCTCGCAACAGTGAAGGAAAA
GGGTTGGGTGCAGCTCCACGCGCATACCGGGACGACCTTCGAACAGGTGC
AATCTGCAATCTCAACTGCTGCCGATCCCTCCTCCGAAGAGTTCTTCTGG
TGTTGCTGGCGGCGGTATTGCCCACTTGTCTTGTGGCCTGCACTGCCGCC
ATCCGAGGCGCACCCTCTCGCCAGCTCTTACGCGGCCTCCCGTGAAAGCG
CCTTCCATTCTTTTTTGTTCCTGCCAGTTTCTTCCTTTTCTTAGCTCTTT
TCCCGGTTGGGCTCTGTTGTGGCCCCCGTTTCTCGCCCTGTCTTTCCCGA
GCAGGACCGGCCGGTGCAGGTGGAGGTGACGGGCATTGTGTGCAACCCGA
CCGGCAATGGCGAGATGCTGCACATCGGCACCGAGCAGGCCTCGGGCCTT
AGCAGGTCGGTTTGGATTTCGGGGTTGAAGGTGGATGCCCTCTGGTCCCA
CATTCCCGCATATTTTGAAAAGCTGATGTACTCGTGCTTACGAAGGACGG
CAAAAAATCGTCAGGGATTTTCTCCTGTACCAATGGATGCATGCGTCAAG
GTCACAATTGACCCCAACTGGCAGACAGTCTTGCGTCCCTCCGCCGATTC
TTTCCTCTTGCCTTATCACAAGCTCTGATGGCCGGCCGCCGTGACGCGCT
CTCGCACGCGATTGCCATTTTGCCGCCGCAGGGCGTACCTGGTGCGGTTG
CTGAAGCCGCGCATCCTAGGGGCGCCGGTGTCCTTCGAGGCGACCGCCAA
GGCGGACGCCACGGACCGCCGCAGCCACAGCAGCTTCGTCGAGCAGGTGG
GGATGGGCGGATTCAAGCCATAGTTGGGTGGATGGCCCCGATGCCGGCGG
CGGTGGTGACAGCAGGCGATCGGCGTTTTTTTTCCGGGGACGCGGCAGGC
GGGAGGAGGCGGCGACAGGCGGCAGGCACAAGACGGGGCAGCAGGGAGCG
GCGGCAGGGTCTTCGCCTTTTGGAACGAATGCGACCGCAGCATGTGGCGT
GCTCTGGCCTTGGAAGTTGTCGTTTGTCACAGCTGCGTGTCGGGTGCCAG
GCAAAACCCGACCATTCATGGGATTTTTTTGTCTCGCTGTCGCTCCTGAG
ACGATTGTGGCGACAAGACCTTGTGTCAAGGCGGCTCTGCTGTTCGTCTT
GCGACGCCGGATGCAGATGGCCTGCTCTTCTCCATCCTGTCCCCAGTCCG
TGTTTTTGGTGTTGGCGCTTGCACGGCGCGCGCCGACGCTTTGACTGTTG
TCCTGGGAAATTTTGTTGGTTTTGGGCAGCGGGCCTGGCTCACGCGTCAG
AATTGCCCTCTCATTCTGCTGCTGCCTGCTCCGTCGATGCTGACCCTTTT
TTTCTTCCTTTCTCCCACTTACTTCTACTCTGGCGTTGGGCATCGCCTCA
TCGATTCTTATCTCCCGGCTGCTGCCCCGGCGTCCTTCATTCGCCGGCGG
ACACGGTTGACCGGCTGTTTGGCTTCCGGCAATCCGCCGTTTGCGTAAAC
AAAAGAGCAGAC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig7085:49..1910-

>mRNA_P-wetherbeei_contig7085.1.1 ID=mRNA_P-wetherbeei_contig7085.1.1|Name=mRNA_P-wetherbeei_contig7085.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=681bp|location=Sequence derived from alignment at P-wetherbeei_contig7085:49..1910- (Phaeothamnion wetherbeei SAG_119_79)
ATGGCCCCGATGCCGGCGGCGGTGGTGACAGCAGGCGATCGGCGTTTTTT
TTCCGGGGACGCGGCAGGCGGGAGGAGGCGGCGACAGGCGGCAGGCACAA
GACGGGGCAGCAGGGAGCGGCGGCAGGGTCTTCGCCTTTTGGAACGAATG
CGACCGCAGCATGTGGCGTGCTCTGGCCTTGGAAGTTGTCGTTTGTCACA
GCTGCGTGTCGGGTGCCAGGCAAAACCCGACCATTCATGGGATTTTTTTG
TCTCGCTGTCGCTCCTGAGACGATTGTGGCGACAAGACCTTGTGTCAAGG
CGGCTCTGCTGTTCGTCTTGCGACGCCGGATGCAGATGGCCTGCTCTTCT
CCATCCTGTCCCCAGTCCGTGTTTTTGGTGTTGGCGCTTGCACGGCGCGC
GCCGACGCTTTGACTGTTGTCCTGGGAAATTTTGTTGGTTTTGGGCAGCG
GGCCTGGCTCACGCGTCAGAATTGCCCTCTCATTCTGCTGCTGCCTGCTC
CGTCGATGCTGACCCTTTTTTTCTTCCTTTCTCCCACTTACTTCTACTCT
GGCGTTGGGCATCGCCTCATCGATTCTTATCTCCCGGCTGCTGCCCCGGC
GTCCTTCATTCGCCGGCGGACACGGTTGACCGGCTGTTTGGCTTCCGGCA
ATCCGCCGTTTGCGTAAACAAAAGAGCAGAC
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