mRNA_P-wetherbeei_contig7075.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig7075.1.1
Unique NamemRNA_P-wetherbeei_contig7075.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig7075.1.1 vs. uniprot
Match: A0A7R9U164_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9U164_9STRA)

HSP 1 Score: 80.1 bits (196), Expect = 2.120e-12
Identity = 37/69 (53.62%), Postives = 55/69 (79.71%), Query Frame = 1 
Query:  178 RRRVARNLREQQRAHKITDLIDHLKVVLDQAGFPTKSNSKFHVLNACEAYIRQLERRKQCFELEQRLRE 384
            +RR+ARN REQ+RAH+I+D+I+ LK  L  AGFPT+S SK+HVL A +AYI+ L+ R++C  +E+++ E
Sbjct:  145 KRRIARNYREQKRAHRISDVIEQLKKTLAAAGFPTRSTSKYHVLKAAQAYIQSLQHRERCAMMEKKVLE 213
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BLAST of mRNA_P-wetherbeei_contig7075.1.1 vs. uniprot
Match: A0A6V1XER4_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1XER4_HETAK)

HSP 1 Score: 79.0 bits (193), Expect = 2.560e-12
Identity = 36/72 (50.00%), Postives = 56/72 (77.78%), Query Frame = 1 
Query:  178 RRRVARNLREQQRAHKITDLIDHLKVVLDQAGFPTKSNSKFHVLNACEAYIRQLERRKQCFELEQRLRELTA 393
            ++R+ARN REQ+RAH+I  +I+ +K +L++  FP KS+SK+H+L+ACE  IR LE R Q +E+E++LR+  A
Sbjct:  136 KKRLARNEREQKRAHRIAQVIEEIKEMLERGSFPLKSSSKYHILSACEEMIRSLEMRTQSYEMEKQLRDAVA 207
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BLAST of mRNA_P-wetherbeei_contig7075.1.1 vs. uniprot
Match: A0A7S1TUJ5_9STRA (Hypothetical protein (Fragment) n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1TUJ5_9STRA)

HSP 1 Score: 79.0 bits (193), Expect = 3.820e-12
Identity = 38/66 (57.58%), Postives = 50/66 (75.76%), Query Frame = 1 
Query:  181 RRVARNLREQQRAHKITDLIDHLKVVLDQAGFPTKSNSKFHVLNACEAYIRQLERRKQCFELEQRL 378
            RR+ RN REQ+RAH+I+D+I+ LK  L  AGFPT S SK+HVL A  AYIR L+ ++QCF+ E+ L
Sbjct:  212 RRMQRNFREQRRAHRISDVIEQLKTSLADAGFPTGSQSKYHVLRAATAYIRSLQHKEQCFKYERDL 277
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BLAST of mRNA_P-wetherbeei_contig7075.1.1 vs. uniprot
Match: D7FWN4_ECTSI (BHLH domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FWN4_ECTSI)

HSP 1 Score: 75.1 bits (183), Expect = 7.850e-11
Identity = 37/72 (51.39%), Postives = 50/72 (69.44%), Query Frame = 1 
Query:  184 RVARNLREQQRAHKITDLIDHLKVVLDQAGFPTKSNSKFHVLNACEAYIRQLERRKQCFELEQRLRELTATH 399
            R A+N REQQRA KI+D+ID LK  LD+A     S+SK HVL +CE+Y+R L  + QC+E+E +LR+    H
Sbjct:  114 RTAKNGREQQRAQKISDVIDQLKATLDKANVSDGSSSKLHVLVSCESYLRSLRDKIQCYEMETKLRQAARGH 185
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BLAST of mRNA_P-wetherbeei_contig7075.1.1 vs. uniprot
Match: A0A835Z4F9_9STRA (BHLH domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z4F9_9STRA)

HSP 1 Score: 64.7 bits (156), Expect = 1.130e-7
Identity = 33/60 (55.00%), Postives = 43/60 (71.67%), Query Frame = 1 
Query:  217 AHKITDLIDHLKVVLDQAGFPTKSNSKFHVLNACEAYIRQLERRKQCFELEQRLRELTAT 396
            A KI+ +I+HLK +LDQA FPTKS SK H L+ CEAYIR L+ R Q +  E++LR+   T
Sbjct:   49 ARKISAVINHLKDMLDQAEFPTKSASKLHTLSGCEAYIRHLQVRVQRYGTERKLRQKAPT 108
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig7075.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A7R9U164_9STRA2.120e-1253.62Hypothetical protein n=1 Tax=Pinguiococcus pyrenoi... [more]
A0A6V1XER4_HETAK2.560e-1250.00Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A7S1TUJ5_9STRA3.820e-1257.58Hypothetical protein (Fragment) n=1 Tax=Phaeomonas... [more]
D7FWN4_ECTSI7.850e-1151.39BHLH domain-containing protein n=1 Tax=Ectocarpus ... [more]
A0A835Z4F9_9STRA1.130e-755.00BHLH domain-containing protein n=1 Tax=Tribonema m... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig7075contigP-wetherbeei_contig7075:2..1336 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog35128.Thaps24007
PFAMsHLH
Model size1335
Max annot lvl2836|Bacillariophyta
Hectar predicted targeting categoryother localisation
Exons1
Evalue0.000632
EggNOG OGs2C415@1|root,2SPVD@2759|Eukaryota,2XGFK@2836|Bacillariophyta
Ec32 ortholog descriptionbHLH domain protein
Ec32 orthologEc-06_001310.1
Descriptionhelix loop helix domain
Cds size1335
COG categoryK
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186956.411423-CDS-P-wetherbeei_contig7075:1..13361683186956.411423-CDS-P-wetherbeei_contig7075:1..1336Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig7075 2..1336 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig7075.1.1prot_P-wetherbeei_contig7075.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig7075 2..1336 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig7075.1.1

>prot_P-wetherbeei_contig7075.1.1 ID=prot_P-wetherbeei_contig7075.1.1|Name=mRNA_P-wetherbeei_contig7075.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=445bp
NFSNDGVGGIGGMGGGNGGGSAVGSATSSRRGGGGTGGSQDGHAGGGDFG
GGGGDDKTLRRRVARNLREQQRAHKITDLIDHLKVVLDQAGFPTKSNSKF
HVLNACEAYIRQLERRKQCFELEQRLRELTATHLAAARDSDGDGDGDGGS
SGSGGGREGESDDCEDGAEPTERPESPDGTGPEGVEMGEVGRVGVTGGDA
GSSGGDVGSSRGDAGSSVGPQSGSSGDGCVDIGMATRVAAAVAAAAAAAA
GNAQPVSGGRESEPASPQRSITPSNDAGFGGSISMVGSDDGCEGSENGGS
GGSSSTTGDGSTTGSSRGSSSGSSSSGGAGGRSRGASSGGNGRHGKERSG
PSGSIGRGSRTGSDDGKGSSDSGETSVDGGATDGSRSGRPVSAASSSRSG
GGGTSRGIGGGGGRSGGGGRIGGLHVDYPSLFRRSSVAMAVASRH
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mRNA from alignment at P-wetherbeei_contig7075:2..1336+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig7075.1.1 ID=mRNA_P-wetherbeei_contig7075.1.1|Name=mRNA_P-wetherbeei_contig7075.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1335bp|location=Sequence derived from alignment at P-wetherbeei_contig7075:2..1336+ (Phaeothamnion wetherbeei SAG_119_79)
AACTTTAGCAACGACGGTGTCGGCGGCATCGGTGGCATGGGTGGCGGCAA
TGGTGGGGGCAGTGCCGTCGGCAGCGCCACGAGCAGCAGGCGTGGCGGCG
GCGGCACCGGCGGCTCACAAGACGGGCACGCTGGCGGGGGCGACTTTGGC
GGCGGCGGCGGCGACGACAAAACGCTGCGGCGGCGCGTCGCCCGTAACCT
GCGGGAGCAGCAGCGGGCCCACAAGATCACCGACCTGATCGACCACCTCA
AGGTCGTGCTGGACCAGGCAGGCTTCCCGACCAAGAGCAACAGCAAGTTC
CACGTACTCAACGCCTGTGAGGCCTACATCCGGCAGCTGGAGCGCCGAAA
GCAGTGCTTCGAGCTAGAGCAGCGGCTGCGCGAGCTCACCGCCACGCACC
TCGCCGCGGCAAGGGACAGCGACGGTGATGGCGATGGCGACGGCGGCAGC
AGTGGAAGCGGCGGCGGCAGGGAGGGTGAGTCTGACGACTGCGAGGACGG
AGCCGAGCCCACCGAGCGTCCGGAATCGCCCGACGGGACCGGCCCCGAAG
GCGTTGAGATGGGGGAGGTCGGGCGGGTAGGCGTCACCGGCGGTGATGCT
GGCAGCAGCGGCGGCGATGTCGGCAGCAGCCGCGGCGACGCCGGGAGCAG
CGTCGGTCCCCAGAGCGGCAGCAGCGGCGACGGGTGCGTCGACATCGGCA
TGGCCACGAGGGTGGCTGCGGCTGTGGCGGCAGCCGCCGCCGCCGCTGCA
GGCAACGCCCAGCCCGTGTCCGGCGGCAGAGAGAGCGAGCCCGCAAGTCC
GCAGCGTTCCATTACGCCGTCGAACGACGCCGGCTTTGGCGGGAGCATTA
GCATGGTGGGGTCCGACGATGGGTGCGAGGGTTCAGAGAACGGCGGAAGC
GGCGGCAGTAGCAGCACCACTGGCGACGGCAGCACTACCGGCAGCAGCAG
AGGCAGCAGCAGCGGCAGCAGCAGCAGCGGTGGTGCCGGTGGGAGAAGCC
GCGGGGCCAGTAGCGGCGGGAACGGTCGCCACGGCAAGGAGCGCAGCGGG
CCCAGTGGCAGCATTGGCCGCGGCTCCAGGACGGGCTCCGACGACGGCAA
GGGCAGCAGCGATAGCGGGGAGACGAGCGTCGACGGCGGCGCCACCGATG
GTAGCCGCAGCGGCCGCCCGGTGTCTGCGGCCTCATCCTCACGCTCCGGC
GGCGGCGGCACTAGCCGCGGCATAGGGGGCGGCGGTGGCCGGTCGGGCGG
CGGCGGCCGTATCGGCGGCCTTCACGTCGACTACCCGAGCCTCTTCCGAA
GGAGCAGCGTCGCCATGGCGGTGGCGTCGCGCCAC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig7075:2..1336+

>mRNA_P-wetherbeei_contig7075.1.1 ID=mRNA_P-wetherbeei_contig7075.1.1|Name=mRNA_P-wetherbeei_contig7075.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=1335bp|location=Sequence derived from alignment at P-wetherbeei_contig7075:2..1336+ (Phaeothamnion wetherbeei SAG_119_79)
AACTTTAGCAACGACGGTGTCGGCGGCATCGGTGGCATGGGTGGCGGCAA
TGGTGGGGGCAGTGCCGTCGGCAGCGCCACGAGCAGCAGGCGTGGCGGCG
GCGGCACCGGCGGCTCACAAGACGGGCACGCTGGCGGGGGCGACTTTGGC
GGCGGCGGCGGCGACGACAAAACGCTGCGGCGGCGCGTCGCCCGTAACCT
GCGGGAGCAGCAGCGGGCCCACAAGATCACCGACCTGATCGACCACCTCA
AGGTCGTGCTGGACCAGGCAGGCTTCCCGACCAAGAGCAACAGCAAGTTC
CACGTACTCAACGCCTGTGAGGCCTACATCCGGCAGCTGGAGCGCCGAAA
GCAGTGCTTCGAGCTAGAGCAGCGGCTGCGCGAGCTCACCGCCACGCACC
TCGCCGCGGCAAGGGACAGCGACGGTGATGGCGATGGCGACGGCGGCAGC
AGTGGAAGCGGCGGCGGCAGGGAGGGTGAGTCTGACGACTGCGAGGACGG
AGCCGAGCCCACCGAGCGTCCGGAATCGCCCGACGGGACCGGCCCCGAAG
GCGTTGAGATGGGGGAGGTCGGGCGGGTAGGCGTCACCGGCGGTGATGCT
GGCAGCAGCGGCGGCGATGTCGGCAGCAGCCGCGGCGACGCCGGGAGCAG
CGTCGGTCCCCAGAGCGGCAGCAGCGGCGACGGGTGCGTCGACATCGGCA
TGGCCACGAGGGTGGCTGCGGCTGTGGCGGCAGCCGCCGCCGCCGCTGCA
GGCAACGCCCAGCCCGTGTCCGGCGGCAGAGAGAGCGAGCCCGCAAGTCC
GCAGCGTTCCATTACGCCGTCGAACGACGCCGGCTTTGGCGGGAGCATTA
GCATGGTGGGGTCCGACGATGGGTGCGAGGGTTCAGAGAACGGCGGAAGC
GGCGGCAGTAGCAGCACCACTGGCGACGGCAGCACTACCGGCAGCAGCAG
AGGCAGCAGCAGCGGCAGCAGCAGCAGCGGTGGTGCCGGTGGGAGAAGCC
GCGGGGCCAGTAGCGGCGGGAACGGTCGCCACGGCAAGGAGCGCAGCGGG
CCCAGTGGCAGCATTGGCCGCGGCTCCAGGACGGGCTCCGACGACGGCAA
GGGCAGCAGCGATAGCGGGGAGACGAGCGTCGACGGCGGCGCCACCGATG
GTAGCCGCAGCGGCCGCCCGGTGTCTGCGGCCTCATCCTCACGCTCCGGC
GGCGGCGGCACTAGCCGCGGCATAGGGGGCGGCGGTGGCCGGTCGGGCGG
CGGCGGCCGTATCGGCGGCCTTCACGTCGACTACCCGAGCCTCTTCCGAA
GGAGCAGCGTCGCCATGGCGGTGGCGTCGCGCCAC
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