mRNA_P-wetherbeei_contig704.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig704.1.1
Unique NamemRNA_P-wetherbeei_contig704.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig704.1.1 vs. uniprot
Match: A0A521I293_9CHLR (YwbE family protein n=1 Tax=Chloroflexi bacterium TaxID=2026724 RepID=A0A521I293_9CHLR)

HSP 1 Score: 89.0 bits (219), Expect = 1.010e-21
Identity = 43/65 (66.15%), Postives = 53/65 (81.54%), Query Frame = 1
Query:   28 PVDRRADVAAGAAVNIVEKQNQRTGLLTSGIVARLLTKSAIHPRGIKVMLEDGRVGRVQRVSSVG 222
            P+ +R+++  GA V +VEKQNQRTG LT GIVAR+LT S+ HPRGIKVMLEDGRVGRVQ+  + G
Sbjct:    2 PITKRSEIKIGARVFVVEKQNQRTGELTEGIVARILTPSSNHPRGIKVMLEDGRVGRVQKFVNDG 66          
BLAST of mRNA_P-wetherbeei_contig704.1.1 vs. uniprot
Match: B0MJ35_ANACD (Uncharacterized protein n=7 Tax=Lachnospiraceae TaxID=186803 RepID=B0MJ35_ANACD)

HSP 1 Score: 82.8 bits (203), Expect = 2.500e-19
Identity = 42/57 (73.68%), Postives = 47/57 (82.46%), Query Frame = 1
Query:   40 RADVAAGAAVNIVEKQNQRTGLLTSGIVARLLTKSAIHPRGIKVMLEDGRVGRVQRV 210
            R+DV  GAAV IV K +QRTG LT GIVARLLTKS+ HP GIKVMLEDG+VGRVQ +
Sbjct:    7 RSDVKIGAAVKIVLKADQRTGKLTEGIVARLLTKSSCHPHGIKVMLEDGQVGRVQEI 63          
BLAST of mRNA_P-wetherbeei_contig704.1.1 vs. uniprot
Match: A0A1E4LEY5_9CLOT (Uncharacterized protein n=1 Tax=Clostridium sp. SCN 57-10 TaxID=1660094 RepID=A0A1E4LEY5_9CLOT)

HSP 1 Score: 82.8 bits (203), Expect = 2.500e-19
Identity = 42/57 (73.68%), Postives = 46/57 (80.70%), Query Frame = 1
Query:   40 RADVAAGAAVNIVEKQNQRTGLLTSGIVARLLTKSAIHPRGIKVMLEDGRVGRVQRV 210
            RADV  GA VNIV K +QRTG LT GIVARLLTKS+ HP GIKVMLEDG+VGRV  +
Sbjct:    7 RADVKPGARVNIVLKADQRTGKLTEGIVARLLTKSSFHPHGIKVMLEDGQVGRVHEI 63          
BLAST of mRNA_P-wetherbeei_contig704.1.1 vs. uniprot
Match: A0A7V5CMV6_9BACT (YwbE family protein n=1 Tax=Armatimonadetes bacterium TaxID=2033014 RepID=A0A7V5CMV6_9BACT)

HSP 1 Score: 82.4 bits (202), Expect = 3.650e-19
Identity = 40/65 (61.54%), Postives = 48/65 (73.85%), Query Frame = 1
Query:   28 PVDRRADVAAGAAVNIVEKQNQRTGLLTSGIVARLLTKSAIHPRGIKVMLEDGRVGRVQRVSSVG 222
            P+  R ++  GA V IVEKQNQ TG LT G VAR+LTKS  HP GIKVML+DGRVGRV+ + + G
Sbjct:    2 PLPNRNEIHPGARVRIVEKQNQPTGALTEGTVARILTKSPAHPHGIKVMLQDGRVGRVKEIVAQG 66          
BLAST of mRNA_P-wetherbeei_contig704.1.1 vs. uniprot
Match: A0A1U7ECE0_9LACT (Uncharacterized protein n=2 Tax=Jeotgalibaca TaxID=1470540 RepID=A0A1U7ECE0_9LACT)

HSP 1 Score: 81.3 bits (199), Expect = 9.680e-19
Identity = 39/58 (67.24%), Postives = 49/58 (84.48%), Query Frame = 1
Query:   37 RRADVAAGAAVNIVEKQNQRTGLLTSGIVARLLTKSAIHPRGIKVMLEDGRVGRVQRV 210
            +RAD+  GA V++V+KQ+QRTG LT G+VA+LLTKS  HP GIKVMLE+G VGRVQ+V
Sbjct:    5 KRADITIGAHVSVVQKQDQRTGKLTEGVVAKLLTKSPNHPHGIKVMLENGIVGRVQKV 62          
BLAST of mRNA_P-wetherbeei_contig704.1.1 vs. uniprot
Match: UPI001F055B3D (YwbE family protein n=2 Tax=Eubacteriales TaxID=186802 RepID=UPI001F055B3D)

HSP 1 Score: 80.5 bits (197), Expect = 2.340e-18
Identity = 40/59 (67.80%), Postives = 46/59 (77.97%), Query Frame = 1
Query:   40 RADVAAGAAVNIVEKQNQRTGLLTSGIVARLLTKSAIHPRGIKVMLEDGRVGRVQRVSS 216
            R+DV  GA V IV K +QRTG LT G+VARLLTKS+ HP GIKVMLEDG+VGRVQ +  
Sbjct:    6 RSDVKVGATVKIVLKADQRTGKLTEGVVARLLTKSSYHPHGIKVMLEDGQVGRVQCIRK 64          
BLAST of mRNA_P-wetherbeei_contig704.1.1 vs. uniprot
Match: A0A3N5WS51_9CHLR (YwbE family protein n=1 Tax=Chloroflexi bacterium TaxID=2026724 RepID=A0A3N5WS51_9CHLR)

HSP 1 Score: 80.1 bits (196), Expect = 2.840e-18
Identity = 40/62 (64.52%), Postives = 46/62 (74.19%), Query Frame = 1
Query:   31 VDRRADVAAGAAVNIVEKQNQRTGLLTSGIVARLLTKSAIHPRGIKVMLEDGRVGRVQRVSS 216
            V  R ++  G  V IVEKQNQR+G LT GIVAR+LTKS  HP GIKVML DG+VGRVQ + S
Sbjct:    3 VPTRMEIRPGMRVQIVEKQNQRSGQLTEGIVARILTKSPTHPHGIKVMLVDGKVGRVQSIVS 64          
BLAST of mRNA_P-wetherbeei_contig704.1.1 vs. uniprot
Match: UPI001105BD28 (YwbE family protein n=1 Tax=[Clostridium] hylemonae TaxID=89153 RepID=UPI001105BD28)

HSP 1 Score: 79.7 bits (195), Expect = 4.040e-18
Identity = 40/57 (70.18%), Postives = 46/57 (80.70%), Query Frame = 1
Query:   40 RADVAAGAAVNIVEKQNQRTGLLTSGIVARLLTKSAIHPRGIKVMLEDGRVGRVQRV 210
            R+DV  GA V IV K +QRTG LT GIVARLLTKS+ HP GIKV+LEDG+VGRVQ +
Sbjct:    6 RSDVKVGATVKIVLKADQRTGNLTKGIVARLLTKSSYHPHGIKVILEDGQVGRVQEI 62          
BLAST of mRNA_P-wetherbeei_contig704.1.1 vs. uniprot
Match: UPI001C1FDF4B (YwbE family protein n=3 Tax=Metabacillus TaxID=2675233 RepID=UPI001C1FDF4B)

HSP 1 Score: 79.7 bits (195), Expect = 4.140e-18
Identity = 37/60 (61.67%), Postives = 48/60 (80.00%), Query Frame = 1
Query:   37 RRADVAAGAAVNIVEKQNQRTGLLTSGIVARLLTKSAIHPRGIKVMLEDGRVGRVQRVSS 216
            +RAD+  GA V +V+KQ+QR+G LT GIV+++LT SA+HP GIKVMLE G VGRV+ VS 
Sbjct:    5 KRADIKIGARVKVVQKQDQRSGKLTEGIVSKILTNSAVHPHGIKVMLESGIVGRVKEVSE 64          
BLAST of mRNA_P-wetherbeei_contig704.1.1 vs. uniprot
Match: A0A415E169_9FIRM (YwbE family protein n=3 Tax=Eubacteriales TaxID=186802 RepID=A0A415E169_9FIRM)

HSP 1 Score: 79.7 bits (195), Expect = 4.360e-18
Identity = 40/57 (70.18%), Postives = 45/57 (78.95%), Query Frame = 1
Query:   40 RADVAAGAAVNIVEKQNQRTGLLTSGIVARLLTKSAIHPRGIKVMLEDGRVGRVQRV 210
            RADV  GA V IV K +QRTG LT GIV +LLTKS+ HP GIKVMLEDG+VGRVQ +
Sbjct:    8 RADVKIGAKVKIVLKADQRTGKLTEGIVGKLLTKSSFHPHGIKVMLEDGQVGRVQEI 64          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig704.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A521I293_9CHLR1.010e-2166.15YwbE family protein n=1 Tax=Chloroflexi bacterium ... [more]
B0MJ35_ANACD2.500e-1973.68Uncharacterized protein n=7 Tax=Lachnospiraceae Ta... [more]
A0A1E4LEY5_9CLOT2.500e-1973.68Uncharacterized protein n=1 Tax=Clostridium sp. SC... [more]
A0A7V5CMV6_9BACT3.650e-1961.54YwbE family protein n=1 Tax=Armatimonadetes bacter... [more]
A0A1U7ECE0_9LACT9.680e-1967.24Uncharacterized protein n=2 Tax=Jeotgalibaca TaxID... [more]
UPI001F055B3D2.340e-1867.80YwbE family protein n=2 Tax=Eubacteriales TaxID=18... [more]
A0A3N5WS51_9CHLR2.840e-1864.52YwbE family protein n=1 Tax=Chloroflexi bacterium ... [more]
UPI001105BD284.040e-1870.18YwbE family protein n=1 Tax=[Clostridium] hylemona... [more]
UPI001C1FDF4B4.140e-1861.67YwbE family protein n=3 Tax=Metabacillus TaxID=267... [more]
A0A415E169_9FIRM4.360e-1870.18YwbE family protein n=3 Tax=Eubacteriales TaxID=18... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig704contigP-wetherbeei_contig704:2140..2379 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog411490.ANACAC_03640
PFAMsDUF2196
Model size240
Max annot lvl186801|Clostridia
Hectar predicted targeting categoryother localisation
Exons1
Evalue4.1e-20
EggNOG OGsCOG4895@1|root,COG4895@2|Bacteria,1VEG3@1239|Firmicutes,24QNU@186801|Clostridia
Descriptionconserved protein (DUF2196)
Cds size240
COG categoryS
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186954.015954-CDS-P-wetherbeei_contig704:2139..23791683186954.015954-CDS-P-wetherbeei_contig704:2139..2379Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig704 2140..2379 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig704.1.1prot_P-wetherbeei_contig704.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig704 2140..2379 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig704.1.1

>prot_P-wetherbeei_contig704.1.1 ID=prot_P-wetherbeei_contig704.1.1|Name=mRNA_P-wetherbeei_contig704.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=80bp
MSTFGCTSRPVDRRADVAAGAAVNIVEKQNQRTGLLTSGIVARLLTKSAI
HPRGIKVMLEDGRVGRVQRVSSVGCIPVH*
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mRNA from alignment at P-wetherbeei_contig704:2140..2379+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig704.1.1 ID=mRNA_P-wetherbeei_contig704.1.1|Name=mRNA_P-wetherbeei_contig704.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=240bp|location=Sequence derived from alignment at P-wetherbeei_contig704:2140..2379+ (Phaeothamnion wetherbeei SAG_119_79)
ATGTCCACTTTCGGCTGCACGTCGCGGCCGGTTGATCGTCGAGCGGATGT TGCAGCGGGAGCTGCGGTGAACATTGTGGAAAAGCAAAATCAACGAACTG GACTGTTGACTTCAGGCATCGTCGCGAGGCTACTTACCAAATCAGCGATC CATCCTCGAGGCATCAAAGTCATGCTAGAGGACGGAAGAGTAGGCAGAGT GCAACGGGTGAGTTCTGTGGGATGTATCCCCGTCCACTAG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig704:2140..2379+

>mRNA_P-wetherbeei_contig704.1.1 ID=mRNA_P-wetherbeei_contig704.1.1|Name=mRNA_P-wetherbeei_contig704.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=240bp|location=Sequence derived from alignment at P-wetherbeei_contig704:2140..2379+ (Phaeothamnion wetherbeei SAG_119_79)
ATGTCCACTTTCGGCTGCACGTCGCGGCCGGTTGATCGTCGAGCGGATGT
TGCAGCGGGAGCTGCGGTGAACATTGTGGAAAAGCAAAATCAACGAACTG
GACTGTTGACTTCAGGCATCGTCGCGAGGCTACTTACCAAATCAGCGATC
CATCCTCGAGGCATCAAAGTCATGCTAGAGGACGGAAGAGTAGGCAGAGT
GCAACGGGTGAGTTCTGTGGGATGTATCCCCGTCCACTAG
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