mRNA_P-wetherbeei_contig7039.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig7039.1.1
Unique NamemRNA_P-wetherbeei_contig7039.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig7039.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig7039contigP-wetherbeei_contig7039:113..1154 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size774
Hectar predicted targeting categorysignal peptide
Exons2
Cds size567
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186953.9605882-CDS-P-wetherbeei_contig7039:112..5141683186953.9605882-CDS-P-wetherbeei_contig7039:112..514Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig7039 113..514 -
1683186953.9705262-CDS-P-wetherbeei_contig7039:783..9481683186953.9705262-CDS-P-wetherbeei_contig7039:783..948Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig7039 784..948 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186953.9802408-UTR-P-wetherbeei_contig7039:948..11541683186953.9802408-UTR-P-wetherbeei_contig7039:948..1154Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig7039 949..1154 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig7039.1.1prot_P-wetherbeei_contig7039.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig7039 113..948 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig7039.1.1

>prot_P-wetherbeei_contig7039.1.1 ID=prot_P-wetherbeei_contig7039.1.1|Name=mRNA_P-wetherbeei_contig7039.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=189bp
MIVRHAARLIFVLGVFGVFLVWISSDSHHRRRKWEASLSALVDDGQPGWR
GLAYAAAIATATPADAATVLRSAAAFRAALADADPGRPVIALVPEPLRTR
LKPQLEKLGFAVPRLPTAASVAASAAANAATAAAAVAAPCANSSGCPLYG
AGDVDSERFYNNGSRALRAYGGYASGAAAHCDNMDDDRD
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mRNA from alignment at P-wetherbeei_contig7039:113..1154-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig7039.1.1 ID=mRNA_P-wetherbeei_contig7039.1.1|Name=mRNA_P-wetherbeei_contig7039.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1042bp|location=Sequence derived from alignment at P-wetherbeei_contig7039:113..1154- (Phaeothamnion wetherbeei SAG_119_79)
TGGAGGGCATTTTGCGCCGTGCACTCTCCTCCTTTTTCCACAACCACCAA
ACCATCAATTGCGACGTCAAACCAAGTTTCAAACTTCGGTGAATCACACC
TCCTCTTTTCCCTCTCGTCGCTCCATCACGGCTTGCCTTTCTTGGTCGTA
GCTCGACGTTTACATCAACCTTTCGACGGCCAAGCTCCGTGCTTTGGCCT
CGGACAATGATAGTAAGACACGCAGCGAGACTGATTTTCGTCCTCGGCGT
CTTCGGCGTTTTCCTTGTTTGGATATCAAGTGACTCTCATCATCGGCGGC
GCAAATGGGAAGCATCATTGTCTGCGCTGGTAGATGATGGACAGCCCGGC
TGGCGAGGGCTGGCTTATGCGGTGCGTTTCGTCCTGACACAAGTTTCGTA
ACACCCATTTGTACGCTCTAGTGCCTTTCAATAACATTTTCGGCAAACAA
TGAAATTCGGATATTTAACCGCTCCCGTTTAGGTTGTGTCTGTACGTCTC
TCGGCTGTTAAGCCATCCCTCCGCAAACCACAAAACCTCACGGTTAAGCA
TTCCTTCTCTCTTTTCGACCTTGCTCTGGCCCCGCTGCCGGCGCTACCAC
TGTTAAGACGACCGTCGGCGTTACTCACCGCCTCCGCCAGGCCGCTATCG
CGACGGCGACGCCGGCGGACGCGGCAACGGTGCTTCGCAGCGCTGCCGCC
TTCCGGGCGGCCCTGGCGGATGCGGACCCCGGCCGGCCAGTGATTGCACT
CGTGCCGGAACCGCTGCGGACGCGGCTGAAACCGCAGCTGGAGAAGCTCG
GCTTTGCGGTCCCGCGGCTGCCGACGGCAGCGAGCGTCGCAGCGTCCGCC
GCCGCCAACGCCGCTACCGCTGCTGCTGCTGTCGCTGCACCATGCGCTAA
CAGCAGCGGTTGCCCGTTGTACGGTGCCGGCGATGTGGACAGCGAGAGAT
TCTATAATAATGGCAGCCGTGCACTCCGCGCTTACGGCGGTTACGCTAGC
GGCGCTGCTGCTCACTGCGACAACATGGATGATGACAGAGAC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig7039:113..1154-

>mRNA_P-wetherbeei_contig7039.1.1 ID=mRNA_P-wetherbeei_contig7039.1.1|Name=mRNA_P-wetherbeei_contig7039.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=567bp|location=Sequence derived from alignment at P-wetherbeei_contig7039:113..1154- (Phaeothamnion wetherbeei SAG_119_79)
ATGATAGTAAGACACGCAGCGAGACTGATTTTCGTCCTCGGCGTCTTCGG
CGTTTTCCTTGTTTGGATATCAAGTGACTCTCATCATCGGCGGCGCAAAT
GGGAAGCATCATTGTCTGCGCTGGTAGATGATGGACAGCCCGGCTGGCGA
GGGCTGGCTTATGCGGCCGCTATCGCGACGGCGACGCCGGCGGACGCGGC
AACGGTGCTTCGCAGCGCTGCCGCCTTCCGGGCGGCCCTGGCGGATGCGG
ACCCCGGCCGGCCAGTGATTGCACTCGTGCCGGAACCGCTGCGGACGCGG
CTGAAACCGCAGCTGGAGAAGCTCGGCTTTGCGGTCCCGCGGCTGCCGAC
GGCAGCGAGCGTCGCAGCGTCCGCCGCCGCCAACGCCGCTACCGCTGCTG
CTGCTGTCGCTGCACCATGCGCTAACAGCAGCGGTTGCCCGTTGTACGGT
GCCGGCGATGTGGACAGCGAGAGATTCTATAATAATGGCAGCCGTGCACT
CCGCGCTTACGGCGGTTACGCTAGCGGCGCTGCTGCTCACTGCGACAACA
TGGATGATGACAGAGAC
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