mRNA_P-wetherbeei_contig7035.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig7035.1.1
Unique NamemRNA_P-wetherbeei_contig7035.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig7035.1.1 vs. uniprot
Match: D7G6U0_ECTSI (REJ domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G6U0_ECTSI)

HSP 1 Score: 137 bits (346), Expect = 1.010e-31
Identity = 76/172 (44.19%), Postives = 113/172 (65.70%), Query Frame = 3 
Query:  282 QVFLRSRIVA--EDYDPTPVARWKYRLAWALVIVEIFALLFFLYLFGAREGSSITRVWLLSFSIGFIQDLFLFTPLRLFLVFMFVPSLMRHRLRPDMFTRIPRYASSVQVARRRPDLQVSRLILQGRIPRGSEYAQYIPPAVSDGSCWTAVVMTG-VFTAIALLFTLPEEAQ 788
            QVF  SRI+   ++   + V      LAW  ++V    L F++ LF  + G + +  W++SF + F +D+FL  PL+L  V++F+PSLMRHR+R DMF RIPR+A+SVQVARR P+++VS +ILQGRIP G+E+ ++IP   +    +T   MTG VFT +A++  LP+  Q
Sbjct: 1730 QVFFNSRILTYGDEDSLSGVPLCIKCLAWLFIVVYAVGLSFYVCLFAVKAGRATSVQWMISFWVAFFEDIFLLVPLKLAFVYLFLPSLMRHRMRSDMFKRIPRHATSVQVARRHPNMEVSGMILQGRIPHGNEFEKFIPLFTARSRWYTC--MTGLVFTVLAIIMLLPDTLQ 1899
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BLAST of mRNA_P-wetherbeei_contig7035.1.1 vs. uniprot
Match: A0A6H5JDC0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JDC0_9PHAE)

HSP 1 Score: 66.6 bits (161), Expect = 4.260e-8
Identity = 50/172 (29.07%), Postives = 78/172 (45.35%), Query Frame = 3 
Query:  282 QVFLRSRIV--AEDYDPTPVARWKYRLAWALVIVEIFALLFFLYLFGAREGSSITRVWLLSFSIGFIQDLFLFTPLRLFLVFMFVPSLMRHRLRPDMFTRIPRYASSVQVARRRPDLQVSRLILQGRIPRGSEYAQYIPPAVSDGSCWTAVVMTG-VFTAIALLFTLPEEAQ 788
            QVF  SRI+   E+   + V      LAW  +++    L F++ LF  + G + +  W++SF + F                                          +VARR P+++VS LILQGRIP G+E+ ++IP   +    +T   MTG VFT +A++  LP+  Q
Sbjct: 1690 QVFFNSRILNYGEEDSQSGVPLCIKCLAWLFIVMYAVGLSFYVCLFAVKAGRATSVQWMISFWVAF-----------------------------------------AEVARRHPNMEVSGLILQGRIPNGNEFEKFIPLFTARSRWYTC--MTGLVFTVLAIIMLLPDTLQ 1818
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BLAST of mRNA_P-wetherbeei_contig7035.1.1 vs. uniprot
Match: A0A7S3XKH5_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XKH5_HETAK)

HSP 1 Score: 60.1 bits (144), Expect = 4.010e-6
Identity = 43/158 (27.22%), Postives = 75/158 (47.47%), Query Frame = 3 
Query:  396 FFLYLFGAREGSSITRVWLLSFSIGFIQDLFLFTPLRLFLVFMFVPSLMRHRLRPDMFTRIPRYASSVQVARRRPDLQVSRLILQGRIPRGSEYAQYIPPAVSDGS--------------CWTAVVMTGVFTAIAL-LFTLPEEAQGAVLD--TCVAF 818
            +++ LFG   GS+ T  W+ +F +GFIQ L +  PL++  +F      +  +L  +    I  YA++ Q+ARR P+L++S++I+Q           Y PP  +                 C    ++T +  A+   L  LP++ Q  + +   CVAF
Sbjct:  487 YYVCLFGINYGSTYTNAWMKTFFLGFIQSLAVTRPLKVAAIFFLCTRFVPQKLDIEELKAIQHYAAAAQLARRYPNLEISKIIIQ---------KDYFPPGYNQEVHETKEKIQRIWKRYCTFENILTYMVLAVGFTLLMLPDDLQDVITEGGICVAF 635
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BLAST of mRNA_P-wetherbeei_contig7035.1.1 vs. uniprot
Match: A0A6U4F022_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A6U4F022_9STRA)

HSP 1 Score: 56.2 bits (134), Expect = 7.770e-5
Identity = 45/137 (32.85%), Postives = 71/137 (51.82%), Query Frame = 3 
Query:  282 QVFLR-SRIVAEDYDPTPVARWKYRLAWALVIVEIFALLFFLYLFGAREGSSITRVWLLSFSIGFIQDLFLFTPLRLFLVFMFVPSLMRHRLRPDM-FTRIPRYASSVQVARRRPDLQVS-RLILQGRIPRGSEYAQ 683
            +VF R + ++ ED    PV R   R A A+V V +   L +L  FG    + +   WL+SF +  I    L  PLR+ ++ + +PSL+R  +  +    R+P Y+++   ARRR DL     L+L  R P+ +  AQ
Sbjct:  537 RVFKRYTHLLGEDEPINPVVR---RTALAVVAVYMLFCLGYLIGFGVSTSNDVATAWLVSFVVAEISTAILLMPLRILVISVVLPSLVRQDVSIERAMIRMPHYSAAAIFARRRTDLVPGLSLLLDERFPKVTRRAQ 670
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig7035.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
D7G6U0_ECTSI1.010e-3144.19REJ domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A6H5JDC0_9PHAE4.260e-829.07Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A7S3XKH5_HETAK4.010e-627.22Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A6U4F022_9STRA7.770e-532.85Hypothetical protein n=1 Tax=Phaeomonas parva TaxI... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig7035contigP-wetherbeei_contig7035:597..2724 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size1150
Hectar predicted targeting categoryother localisation
Exons6
Cds size1146
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig7035.1.1prot_P-wetherbeei_contig7035.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig7035 597..2722 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186953.7513807-CDS-P-wetherbeei_contig7035:596..8001683186953.7513807-CDS-P-wetherbeei_contig7035:596..800Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig7035 597..800 -
1683186953.761315-CDS-P-wetherbeei_contig7035:936..12781683186953.761315-CDS-P-wetherbeei_contig7035:936..1278Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig7035 937..1278 -
1683186953.7695444-CDS-P-wetherbeei_contig7035:1438..15351683186953.7695444-CDS-P-wetherbeei_contig7035:1438..1535Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig7035 1439..1535 -
1683186953.7779086-CDS-P-wetherbeei_contig7035:1712..17381683186953.7779086-CDS-P-wetherbeei_contig7035:1712..1738Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig7035 1713..1738 -
1683186953.7860029-CDS-P-wetherbeei_contig7035:1949..20881683186953.7860029-CDS-P-wetherbeei_contig7035:1949..2088Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig7035 1950..2088 -
1683186953.7977364-CDS-P-wetherbeei_contig7035:2384..27221683186953.7977364-CDS-P-wetherbeei_contig7035:2384..2722Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig7035 2385..2722 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186953.808327-UTR-P-wetherbeei_contig7035:2722..27241683186953.808327-UTR-P-wetherbeei_contig7035:2722..2724Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig7035 2723..2724 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig7035.1.1

>prot_P-wetherbeei_contig7035.1.1 ID=prot_P-wetherbeei_contig7035.1.1|Name=mRNA_P-wetherbeei_contig7035.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=382bp
MPTAEGEKRLFEVASADSLRNLERQASSDGENPRHSRRDKKQPEQQELQP
DILSPRRAASRALLLPVTALTYFFRVVCTVMALRFDPHFSVCMQVFLRSR
IVAEDYDPTPVARWKYRLAWALVIVEIFALLFFLYLFGAREGSSITRVWL
LSFSIGFIQDLFLFTPLRLFLVFMFVPSLMRHRLRPDMFTRIPRYASSVQ
VARRRPDLQVSRLILQGRIPRGSEYAQYIPPAVSDGSCWTAVVMTGVFTA
IALLFTLPEEAQGAVLDTCVAFAGGVVVIAAHRIYVEAEWVLAIIVVGGI
LLFLIIMFWRHLKLIEVEDKARVMAARASLRHHLFPGAAPEEQSMDQDEE
TFGAAAAAGGQNVWPTSPNDAVTPFGAPVFAL
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mRNA from alignment at P-wetherbeei_contig7035:597..2724-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig7035.1.1 ID=mRNA_P-wetherbeei_contig7035.1.1|Name=mRNA_P-wetherbeei_contig7035.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=2128bp|location=Sequence derived from alignment at P-wetherbeei_contig7035:597..2724- (Phaeothamnion wetherbeei SAG_119_79)
AGATGCCAACTGCGGAGGGGGAGAAGCGGCTGTTCGAGGTGGCCTCCGCA
GACTCCCTCCGCAACCTTGAGCGCCAGGCGAGCAGCGATGGGGAAAACCC
ACGGCACAGCAGGAGGGACAAAAAGCAGCCAGAACAGCAAGAGCTGCAGC
CCGACATCCTTTCACCAAGGCGGGCTGCCTCTCGTGCCTTGCTTCTCCCT
GTGACAGCCTTGACCTATTTCTTCCGTGTGGTCTGCACCGTAATGGCTCT
TCGCTTCGATCCACATTTTTCTGTCTGCATGCAGGTCTTCTTACGGTCGC
GCATCGTCGCAGAAGACTATGACCCGACTCCGGTGGCCCGGTAAGCCCCG
CATGCATGCAGTTCTTTCCGATTGCGAGAGTGATGAAAGAGTCTTTTTGT
CTGCCTTTTTGCGGCTCCCTTCTCGTGGCGCTTAATGCTTCTCGTCAGCT
TTACGGGTAGTTCCCATCGTTGGGCTCTTCTCTCAAACTTTCCCCACCAA
TCTGTCTGCCGGTTACTACCGCCGCCATCTGCTGCTGCCGCTCGCCAACG
CTCCTCCCGCCCCACCTTCTGCTGCCCTTGGTGCTGCCGCCATGCCGCTA
ATGCCGTCACCGCTGGAACCGTTCCTTCGTCCGCAGCTGGAAGTACCGTC
TGGCATGGGCCTTAGTGATAGTGGAGATCTTCGCACTGCTCTTCTTCTTG
TATCTCTTCGGGGCGCGCGAAGGGTCCAGCATCACGCGCGTCTGGCTCCT
CTCCTTCTCCATCGGCTTTATACAGGTCTGCTTTGTACATCAACTGTGCC
GGCCGGCCGACTCCTGCCTGCTCGTCCAACCGCCTGCAGCAGTTTGACCT
GCTCCCTGCCGCTTATAATGTGTTGCCTCGCGGAGGATCATTCTCATCAC
CGATGTGTAACCCCGGGTTCAGTTCTCTCTTCTCCCGTGCCGCTCACAAA
CCTCGGCTGGATGGTTGCTGGACATCAAACGCGCAGGACCTCTTCCTCTT
CACACCGCTAAGGTAAGCGCAGCCACCCGGCCCAAAGGGCGAAGAAACGA
CAAATGCAATCGGTGCTGGAACGAAAATAGAAGCCGCCTAGAGCGCCGGC
TCCCTCGCATTCTGTTGCTCACCTGTTCACTAACGCTCTGTCAACGTCGT
TGCCGCTGCCGCCGCCGCCGCATCCGCCGTCTTTGTCAGGCTCTTTCTGG
TGTTCATGTTCGTGCCGAGTCTTATGCGTCATCGCCTCCGGCCAGACATG
TTCACCCGCATCCCGCGCTACGCCTCGTCGGTCCAGGTGAGCGCTCCCAC
TGATAATTCTTTCAACTTGTCCGCATTTCCGGCTTCACTGTATGTAGGTT
TTGCTGGTACAGCCGTTCCTCATTGATGCTCCGTCCCGCAGCCGTATCTC
CAGCAGCAAAACTGATCCGCATCGCCGCCTCTCAAAAACTACATAGGTGG
CGCGACGGCGGCCGGATCTGCAAGTCAGCCGCCTCATCCTCCAGGGGCGC
ATCCCGCGGGGCAGCGAGTACGCGCAGTACATCCCGCCGGCTGTTTCCGA
CGGCAGCTGCTGGACAGCCGTTGTGATGACGGGCGTCTTTACTGCCATCG
CACTGCTCTTTACGCTGCCAGAGGAGGCGCAAGGCGCGGTTCTCGACACG
TGTGTCGCCTTTGCCGGCGGTGTCGTCGTCATTGCCGCGCACCGCATCTA
CGTGGAGGCGGAATGGGTGCTGGCCATTATTGTGGTTGGCGGCATTCTGC
TGTTCTTGATCATAATGTTTTGGCGCCACCTTAAGCTGGTAAGTTTCATC
GTCGAATGCTCTTTTCCTTGTCTGTTGTGCTTCGAAACGGTTGTGAGGGT
TGTGCCCTCCAGCATGCCCGGTTTGTCTCCTTTTTCTAAACGTCCCTTGG
TCCCATCCTCGCGTCTGCCTACAGATCGAGGTGGAGGATAAAGCACGCGT
CATGGCGGCCCGTGCATCGCTGCGGCATCACCTCTTTCCCGGCGCCGCCC
CGGAGGAGCAGTCGATGGACCAAGACGAGGAAACCTTTGGCGCCGCCGCC
GCGGCGGGGGGCCAAAACGTGTGGCCAACGTCGCCCAACGACGCCGTTAC
GCCGTTCGGCGCACCTGTCTTTGCCTTG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig7035:597..2724-

>mRNA_P-wetherbeei_contig7035.1.1 ID=mRNA_P-wetherbeei_contig7035.1.1|Name=mRNA_P-wetherbeei_contig7035.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=1146bp|location=Sequence derived from alignment at P-wetherbeei_contig7035:597..2724- (Phaeothamnion wetherbeei SAG_119_79)
ATGCCAACTGCGGAGGGGGAGAAGCGGCTGTTCGAGGTGGCCTCCGCAGA
CTCCCTCCGCAACCTTGAGCGCCAGGCGAGCAGCGATGGGGAAAACCCAC
GGCACAGCAGGAGGGACAAAAAGCAGCCAGAACAGCAAGAGCTGCAGCCC
GACATCCTTTCACCAAGGCGGGCTGCCTCTCGTGCCTTGCTTCTCCCTGT
GACAGCCTTGACCTATTTCTTCCGTGTGGTCTGCACCGTAATGGCTCTTC
GCTTCGATCCACATTTTTCTGTCTGCATGCAGGTCTTCTTACGGTCGCGC
ATCGTCGCAGAAGACTATGACCCGACTCCGGTGGCCCGCTGGAAGTACCG
TCTGGCATGGGCCTTAGTGATAGTGGAGATCTTCGCACTGCTCTTCTTCT
TGTATCTCTTCGGGGCGCGCGAAGGGTCCAGCATCACGCGCGTCTGGCTC
CTCTCCTTCTCCATCGGCTTTATACAGGACCTCTTCCTCTTCACACCGCT
AAGGCTCTTTCTGGTGTTCATGTTCGTGCCGAGTCTTATGCGTCATCGCC
TCCGGCCAGACATGTTCACCCGCATCCCGCGCTACGCCTCGTCGGTCCAG
GTGGCGCGACGGCGGCCGGATCTGCAAGTCAGCCGCCTCATCCTCCAGGG
GCGCATCCCGCGGGGCAGCGAGTACGCGCAGTACATCCCGCCGGCTGTTT
CCGACGGCAGCTGCTGGACAGCCGTTGTGATGACGGGCGTCTTTACTGCC
ATCGCACTGCTCTTTACGCTGCCAGAGGAGGCGCAAGGCGCGGTTCTCGA
CACGTGTGTCGCCTTTGCCGGCGGTGTCGTCGTCATTGCCGCGCACCGCA
TCTACGTGGAGGCGGAATGGGTGCTGGCCATTATTGTGGTTGGCGGCATT
CTGCTGTTCTTGATCATAATGTTTTGGCGCCACCTTAAGCTGATCGAGGT
GGAGGATAAAGCACGCGTCATGGCGGCCCGTGCATCGCTGCGGCATCACC
TCTTTCCCGGCGCCGCCCCGGAGGAGCAGTCGATGGACCAAGACGAGGAA
ACCTTTGGCGCCGCCGCCGCGGCGGGGGGCCAAAACGTGTGGCCAACGTC
GCCCAACGACGCCGTTACGCCGTTCGGCGCACCTGTCTTTGCCTTG
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