mRNA_P-wetherbeei_contig7010.3.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig7010.3.1
Unique NamemRNA_P-wetherbeei_contig7010.3.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig7010.3.1 vs. uniprot
Match: A0A6H5K8F0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K8F0_9PHAE)

HSP 1 Score: 310 bits (793), Expect = 4.390e-88
Identity = 149/269 (55.39%), Postives = 207/269 (76.95%), Query Frame = 2
Query:  647 PLTSRVLKWAFERVIRMRATRVEGLEVFVSAKSNRRALSGDLQTVGINWDALALPQLQITGGAKVQITGVDLKVLFLVWRRFMAFKRPFEVSGYYVFTNSDVVGSPLIRRLVQAMLNATLRKLEDYATDRRAVQRTGINVLRVMIKKSKLVVDGEVVYDKFRVPFNYRTGLGISKRGHVVYLRDPEVFWDNVGGSLTLPLVPLQAFDVDIGDNARIEHIDIRDGRLTVRARFVLSPIPPLVVADVSKRAAFRYDLGERLSISFGGLVDN 1453
            PL S++L W  ER I  RA  VEGLEV V A+SNR A+SG LQ+VGI ++ L L  LQI+GGA++ IT +DLKV+ L+W+RF +FK+PFE+ G YV T+ D+  S ++RRLV  M+N+TLRKLE  AT+   ++++ I + +V  K+S+LV++GE+ YD  +VPF YRT +G+  +GHVVYL+D EVFW+N+GGSL+LPL+PL+ FDVD+G+ ARIE I I +G++ ++AR V+SP PPL+VA V KRAAFR+D+ ERLS++FG LV N
Sbjct:  496 PLWSKILVWVLERAITNRAMLVEGLEVSVDARSNREAMSGLLQSVGITFNHLELENLQISGGARMNITNLDLKVMTLLWKRFGSFKKPFEIEGSYVLTSEDLSTSSIVRRLVTNMMNSTLRKLETLATE--PLRKSSITITQVSAKRSRLVIEGEMAYDSAKVPFTYRTSIGVKGKGHVVYLKDAEVFWENIGGSLSLPLLPLETFDVDMGEGARIESIRIVNGQVALKARVVISPFPPLLVASVRKRAAFRFDVAERLSVTFGNLVQN 762          
BLAST of mRNA_P-wetherbeei_contig7010.3.1 vs. uniprot
Match: D7G8F0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G8F0_ECTSI)

HSP 1 Score: 266 bits (679), Expect = 8.860e-75
Identity = 132/269 (49.07%), Postives = 186/269 (69.14%), Query Frame = 2
Query:  647 PLTSRVLKWAFERVIRMRATRVEGLEVFVSAKSNRRALSGDLQTVGINWDALALPQLQITGGAKVQITGVDLKVLFLVWRRFMAFKRPFEVSGYYVFTNSDVVGSPLIRRLVQAMLNATLRKLEDYATDRRAVQRTGINVLRVMIKKSKLVVDGEVVYDKFRVPFNYRTGLGISKRGHVVYLRDPEVFWDNVGGSLTLPLVPLQAFDVDIGDNARIEHIDIRDGRLTVRARFVLSPIPPLVVADVSKRAAFRYDLGERLSISFGGLVDN 1453
            PL S++L W FER I  RA  VEGLE                                I+GGA++ IT +DLKV+ L+W+RF +FK+PFE+ G YV T+ D+  S ++RRLV  M+N+TLRKLE  AT+   ++++ I + +V+ K+S+LV++GE+ YD  +VPF YRT +G+  +GHVVYL+D EVFW+NVGGSL+LPL+PL+ FDVD+G+ ARIE I I +G++ ++AR V+SP PPL+VA + KRAAFR+D+ ERLS++FG LV N
Sbjct:  269 PLWSKILVWVFERAITNRAMLVEGLE--------------------------------ISGGARMNITNLDLKVMTLLWKRFGSFKKPFEIEGSYVLTSEDLSTSSMVRRLVTNMMNSTLRKLETLATE--PLRKSSITITQVLAKRSRLVIEGEMAYDSAKVPFTYRTSIGVKGKGHVVYLKDAEVFWENVGGSLSLPLLPLETFDVDMGEGARIESIRIVNGQVALKARVVISPFPPLLVASLRKRAAFRFDVAERLSVTFGNLVQN 503          
BLAST of mRNA_P-wetherbeei_contig7010.3.1 vs. uniprot
Match: A0A835YIN5_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YIN5_9STRA)

HSP 1 Score: 206 bits (525), Expect = 3.180e-55
Identity = 123/279 (44.09%), Postives = 165/279 (59.14%), Query Frame = 2
Query:  644 IPLTSRVLKWAFERVIRMRATRVEGLEVFVSAKSNRRALSGDLQTVGINWDALALPQLQITGGAKVQITGVDLKVLFLVWRRFMAFKRPFEVSGYYVFTNSDVVGSPLIRRLVQAMLNATLRKLEDYATDRRAVQRTGINVLRVMIKKSKLVVDGEV-VYDKFRVPFNYRTGLGISKRGHVVYLRDPEVFWDNVGGSLTLPL-------VPLQAFDVDIGDNARIEHIDIRDGRLTVRARFVLSPIPPLVVADVSKRAAFRYDLGERLSISFGGLVDNA 1456
            IP+T + L W   ++I  RA RVEGL++ V A SNR+ALSG+L+TV   +  LALP +QITGGA + +TGVDLK+L L+ RR  AFK+PF+V G +VFT++D V S  IR +VQA+L A+   L   A          + V RV IK  ++V+D    V  +F    N    L  S  GHVV LR   + + N  G             +P      D+GDN RIE + IR+GR T+R  FV++P PPL+VADV KR   RYD+GER+S     ++DNA
Sbjct:  102 IPVTGKALSWMLAQIIYKRALRVEGLDLLVQAASNRKALSGNLKTVWCKFRTLALPAIQITGGANMVVTGVDLKMLLLMHRRLGAFKKPFQVRGEWVFTSNDFVASNAIRNMVQAILTASFNALSLGA----------VRVTRVSIKGDRIVIDARSSVLQRFSCSAN----LATSSDGHVVSLRS--LRYSNQAGEFLFQTPWQLAATLPRDLVSCDMGDNTRIEALTIRNGRATLRGCFVVTPTPPLIVADVGKRGMVRYDVGERISAIVSDVLDNA 364          
BLAST of mRNA_P-wetherbeei_contig7010.3.1 vs. uniprot
Match: A0A836CBR5_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CBR5_9STRA)

HSP 1 Score: 182 bits (463), Expect = 1.910e-48
Identity = 107/251 (42.63%), Postives = 147/251 (58.57%), Query Frame = 2
Query:  725 VFVSAKSNRRALSGDLQTVGINWDALALPQLQITGGAKVQITGVDLKVLFLVWRRFMAFKRPFEVSGYYVFTNSDVVGSPLIRRLVQAMLNATLRKLEDYATDRRAVQRTGINVLRVMIKKSKLVVDGEVVYDKFRVPFNYRTGLGISKRGHVVYLRDPEVFWDNVGGSLTLPL-------VPLQAFDVDIGDNARIEHIDIRDGRLTVRARFVLSPIPPLVVADVSKRAAFRYDLGERLSISFGGLVDNA 1456
            + V A SNR ALSG+L+ V IN+  LALPQ+QITGGA + +TGVDLK+L+L+ RR  AFK+PF+V G + FTN+D + SP IR +VQ +L A+  +L              + V RV I   +++ +G   +      F+    L  S+ GHV+ LR  +  + N  G             +P      D+GDN RIE + IR+GRLTVR  FV++P PPL+VADV KR   RYD+GERLS     ++D A
Sbjct:    1 MLVEASSNRDALSGNLKNVWINFKTLALPQMQITGGASMVVTGVDLKMLYLMHRRLGAFKKPFQVRGEWSFTNNDFIASPAIRNMVQNILAASFARLN----------LGPVRVSRVSISGDRILFEG---HSDILQRFSCSANLATSQDGHVISLRSLK--YGNQAGEYLFQTPWQVAATLPKDLVSCDMGDNTRIEALSIRNGRLTVRGMFVVTPTPPLIVADVGKRGMVRYDVGERLSALVSEVLDRA 236          
BLAST of mRNA_P-wetherbeei_contig7010.3.1 vs. uniprot
Match: A0A4D9D3X5_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9D3X5_9STRA)

HSP 1 Score: 179 bits (455), Expect = 6.730e-47
Identity = 111/272 (40.81%), Postives = 164/272 (60.29%), Query Frame = 2
Query:  638 ERIPLTSRVLKWAFERVIRMRATRVEGLEVFVSAKSNRRALSGDLQTVGINWDALALPQLQITGGAKVQITGVDLKVL-FLVWRRFMAFKRPFEVSGYYVFTNSDVVGSPLIRRLVQAMLNATLRKLEDYATDRRAVQRTGINVLRVMIKKSKLVVDG--EVVYDKFRVPFNYRTGLGISKRGHVVYLRDPEVFWDNVGG-SLTLPLVPLQAFDVDIGDNARIEHIDIRDGR-LTVRARFVLSPIPPLVVADVSKRAAFRYDLGERLSISFG 1438
            ER P+ S V++    +++R  A RV GL+V V A+SN   L+G+L  V   +  + L  LQI+GG +++ITG+++++L  L+ RR    ++PFEV G YV T  DV  S LIR +VQ ++N  LR L  + +         I+ +R+  ++ KL V G   V      +PF   TG+G++  GH+VYL DPE+  +      + +PL  ++AFDVDIGDNARIE ++I + R +TV AR +++P PP  V DV KRAAF YD+G   S  FG
Sbjct:    3 ERKPILSTVVEVLASKLVRKTARRVTGLDVDVGARSNSDVLAGNLPLVKAKFSRIVLENLQISGGGRMEITGLNIRLLALLLARRLSLIRKPFEVCGEYVLTQQDVSASKLIRDMVQLLVNNVLRTL--FPSLHLTFFDVSIDSVRISPRR-KLAVHGTANVAESASGMPFTLLTGVGLAGDGHIVYLDDPELVLNPKAPLPVKVPLGSIRAFDVDIGDNARIERLEIDEARGVTVTARTLITPAPPFQVTDVGKRAAFLYDMGAFFSSFFG 271          
BLAST of mRNA_P-wetherbeei_contig7010.3.1 vs. uniprot
Match: W7TXL0_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TXL0_9STRA)

HSP 1 Score: 179 bits (455), Expect = 7.660e-46
Identity = 111/272 (40.81%), Postives = 164/272 (60.29%), Query Frame = 2
Query:  638 ERIPLTSRVLKWAFERVIRMRATRVEGLEVFVSAKSNRRALSGDLQTVGINWDALALPQLQITGGAKVQITGVDLKVL-FLVWRRFMAFKRPFEVSGYYVFTNSDVVGSPLIRRLVQAMLNATLRKLEDYATDRRAVQRTGINVLRVMIKKSKLVVDG--EVVYDKFRVPFNYRTGLGISKRGHVVYLRDPEVFWDNVGG-SLTLPLVPLQAFDVDIGDNARIEHIDIRDGR-LTVRARFVLSPIPPLVVADVSKRAAFRYDLGERLSISFG 1438
            ER P+ S V++    +++R  A RV GL+V V A+SN   L+G+L  V   +  + L  LQI+GG +++ITG+++++L  L+ RR    ++PFEV G YV T  DV  S LIR +VQ ++N  LR L  + +         I+ +R+  ++ KL V G   V      +PF   TG+G++  GH+VYL DPE+  +      + +PL  ++AFDVDIGDNARIE ++I + R +TV AR +++P PP  V DV KRAAF YD+G   S  FG
Sbjct:   94 ERKPILSTVVEVLASKLVRKTARRVTGLDVDVGARSNSDVLAGNLPLVKAKFSRIVLENLQISGGGRMEITGLNIRLLALLLARRLSLIRKPFEVCGEYVLTQQDVSASKLIRDMVQLLVNNVLRTL--FPSLHLTFFDVSIDSVRISPRR-KLAVHGTANVAESASGMPFTLLTGVGLAGDGHIVYLDDPELVLNPEAPLPVKVPLGSIRAFDVDIGDNARIERLEIDEARGVTVTARTLITPAPPFQVTDVGKRAAFLYDMGAFFSSFFG 362          
BLAST of mRNA_P-wetherbeei_contig7010.3.1 vs. uniprot
Match: D8LB91_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LB91_ECTSI)

HSP 1 Score: 152 bits (383), Expect = 1.160e-36
Identity = 108/326 (33.13%), Postives = 152/326 (46.63%), Query Frame = 2
Query:  635 GERIPLTSRVLKWAFERVIRMRATRVEGLEVFVSAKSNRRALSGDLQTVGINWDALALPQLQITGGAKVQITGVDLKVLFLV---WRRFMAFKRPFEVSGYYVFTNSDVVGSPLIRRLVQAMLNATLRKLEDYAT--------------------------------------DRRAVQRTG-----INVLRVMIKKSKLVVDGEVVYDK--FRVPFNYRTGLGISKRGHVVYLRDPEVFWDNVGGSLTLPLVPLQAFDVDIGDNARIEHIDIRDGRLTVRARFVLSPIPPLVVADVS-KRAAFRYDLGERLSISFGGLVDNAFRL 1465
            G R P TS   +W  +R I   A     L V V A++NR A+ G  +++ I++       +Q++GGA  ++ GVD+  L L+   WRR    +RP E  G   FT+ DV  SP IRRL Q ++N  LR     A                                          + Q+ G     ++VL V +  +KL ++GE+       RVPF Y   L  S  GHV+Y +   V+W   GG + LP++PLQ+F +D+GD ARIEH+ I  G L++  RF+L+  P   VA    KR    YDL E LS     LV N   L
Sbjct:   15 GGRRPFTSHAARWFIKRRILSTAKASAALNVEVEARNNRDAMRGRWESISIDFAKTIFEDIQVSGGA-FELLGVDVLTLGLLPGPWRRLRRLRRPCEAIGRSTFTDVDVAYSPAIRRLAQRVVNHALRPRAKRAAVAXXXXXXXXXXXXXXXXXXXXLPXXXXXXXXXXXXXXXXXSEQQQGGLEPSVSVLGVRVHGNKLAIEGEMTNGGTFLRVPFRYHFSLSASADGHVLYFKGSSVYWGTPGGHVPLPMMPLQSFKIDLGDRARIEHLRISRGVLSLGGRFILTNTPGFTVALPGLKRGDINYDLAESLS----RLVSNCLNL 335          
BLAST of mRNA_P-wetherbeei_contig7010.3.1 vs. uniprot
Match: A0A6H5K9J0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K9J0_9PHAE)

HSP 1 Score: 154 bits (388), Expect = 1.840e-36
Identity = 108/321 (33.64%), Postives = 153/321 (47.66%), Query Frame = 2
Query:  635 GERIPLTSRVLKWAFERVIRMRATRVEGLEVFVSAKSNRRALSGDLQTVGINWDALALPQLQITGGAKVQITGVDLKVLFLV---WRRFMAFKRPFEVSGYYVFTNSDVVGSPLIRRLVQAMLNATLRKLEDYA---------------------------------TDRRAVQRTG-----INVLRVMIKKSKLVVDGEVVYDK--FRVPFNYRTGLGISKRGHVVYLRDPEVFWDNVGGSLTLPLVPLQAFDVDIGDNARIEHIDIRDGRLTVRARFVLSPIPPLVVADVS-KRAAFRYDLGERLSISFGGLVDNAFRL 1465
            G R P TS   +W  +R I   A     L V V A++NR A+ G  +++ I++       +Q++GGA  ++ GVD+  L L+   WRR    +RP E  G   FT+ DV  SP IRRL Q ++N  L+     A                                     + Q+ G     ++VL V +  +KL ++GE+       RVPF Y   L  S+ GHV+Y +   V+W   GG + LP++PLQ+F +D+GD ARIEH+ I  G L+V  RF+L+  P   VA    KR    YDL E LS     LV N   L
Sbjct:  111 GGRRPFTSHAARWFIKRRILSTAKASAALNVEVEARNNRDAMRGRWESISIDFAKTIFEDIQVSGGA-FELLGVDVLTLGLLPGPWRRLRRLRRPCEAIGRSTFTDVDVAYSPAIRRLAQRVVNHALQPRAKRAGVVAGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGSAQQQGRLEPSVSVLGVRVHGNKLAIEGEMTNGGTFLRVPFRYHFSLSASQDGHVLYFKGSSVYWGTPGGHVPLPMMPLQSFKIDLGDRARIEHLRISRGVLSVGGRFILTNTPGFTVALPGLKRGDINYDLAEGLS----RLVSNCLNL 426          
BLAST of mRNA_P-wetherbeei_contig7010.3.1 vs. uniprot
Match: A0A7S1Z9Q4_9STRA (Hypothetical protein n=2 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S1Z9Q4_9STRA)

HSP 1 Score: 80.9 bits (198), Expect = 3.110e-12
Identity = 69/212 (32.55%), Postives = 104/212 (49.06%), Query Frame = 2
Query:  770 LQTVGINWDALALPQLQITGGAKVQITGVDLKVL--------FLVWRRFMAFKRPFEVSGY-YVFTNSDVVGSPLIRRLVQAMLNATLRKLEDYATDRRAVQRTGINVLRVMIKKSKLV-VDGEVVYDK-FRVPFNYRTGLGISKRGHVVYLRDPEVFWDNVGGSLTLPLVPLQAF----DVDIGDNARIEHIDI--RDGRLTVRARFVLSP 1354
            L  V IN++ L    L+++GG ++ I  + LK+L         L  ++   F  PFE      +FT  D++ SP IR  +Q +LN  L K    +        T + V  V I  SK V  +G+ +     +VPF  RTGL +S RGHV+ L   E+  +        P  P Q F    DVD+G NA+IE + I  + G+L++ AR  ++P
Sbjct:  177 LSDVQINFERLVFHNLRMSGG-RIDIKRMSLKILANVPSLRRVLGNKKIHCFPSPFEFHAQDCIFTQDDIIQSPCIRNGIQNLLNHILNKSGFLSA-------TSVTVSSVKILSSKKVSCEGKAITALGTQVPFEVRTGLDVSSRGHVLLLPGLEIALN--------PAFPFQMFVPEVDVDLGHNAQIESLIINGKRGKLSLSARATVTP 372          
BLAST of mRNA_P-wetherbeei_contig7010.3.1 vs. uniprot
Match: A0A7S4RBJ8_9STRA (Hypothetical protein n=2 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4RBJ8_9STRA)

HSP 1 Score: 81.6 bits (200), Expect = 3.260e-12
Identity = 71/209 (33.97%), Postives = 109/209 (52.15%), Query Frame = 2
Query:  770 LQTVGINWDALALPQLQITGGAKVQITGVDLKVLFLV--WRRFMAFKR------PFEVSGY-YVFTNSDVVGSPLIRRLVQAMLNATLRKLEDYATDRRAVQRTGINVLRVMIKKSKLV-VDGEVVYDK-FRVPFNYRTGLGISKRGHVVYLRDPEVFWDNVGG-SLTLPLVPLQAFDVDIGDNARIEHIDI--RDGRLTVRARFVLSP 1354
            L  V IN++ L    L+++GG ++ I  + LK+L  V   RR +  K+      PFE      +FT  D++ SP IR  +Q +LN  L K    +        T + V  V I  SK V  +G+ +     +VPF  RTGLG+S RGHV+ L   E+  +      + +P+VP    DVD+G NA+IE + I  + G+L++ AR  ++P
Sbjct:  292 LSDVQINFERLVFHNLRMSGG-RIDIKRMSLKILANVPSLRRVLGNKKIHRFPSPFEFHAQDCIFTQDDILQSPCIRNGIQNLLNHILNKSGFLSA-------TSVTVSSVKILSSKKVSCEGKAITALGTQVPFEVRTGLGVSSRGHVLLLPGLEIALNPAFPFQMFVPVVP--EVDVDLGHNAQIESLIINGKRGKLSLSARATVTP 490          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig7010.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 14
Match NameE-valueIdentityDescription
A0A6H5K8F0_9PHAE4.390e-8855.39Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G8F0_ECTSI8.860e-7549.07Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A835YIN5_9STRA3.180e-5544.09Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A836CBR5_9STRA1.910e-4842.63Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A4D9D3X5_9STRA6.730e-4740.81Uncharacterized protein n=1 Tax=Nannochloropsis sa... [more]
W7TXL0_9STRA7.660e-4640.81Uncharacterized protein n=1 Tax=Nannochloropsis ga... [more]
D8LB91_ECTSI1.160e-3633.13Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5K9J0_9PHAE1.840e-3633.64Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A7S1Z9Q4_9STRA3.110e-1232.55Hypothetical protein n=2 Tax=Ditylum brightwellii ... [more]
A0A7S4RBJ8_9STRA3.260e-1233.97Hypothetical protein n=2 Tax=Ditylum brightwellii ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig7010contigP-wetherbeei_contig7010:55..3185 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size3131
Hectar predicted targeting categoryother localisation
Exons1
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-14_002800.1
Cds size1416
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186952.2607977-UTR-P-wetherbeei_contig7010:54..1091683186952.2607977-UTR-P-wetherbeei_contig7010:54..109Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig7010 55..109 +
1683186952.2811313-UTR-P-wetherbeei_contig7010:1525..31851683186952.2811313-UTR-P-wetherbeei_contig7010:1525..3185Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig7010 1526..3185 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186952.2729225-CDS-P-wetherbeei_contig7010:109..15251683186952.2729225-CDS-P-wetherbeei_contig7010:109..1525Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig7010 110..1525 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig7010.3.1prot_P-wetherbeei_contig7010.3.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig7010 110..1525 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig7010.3.1

>prot_P-wetherbeei_contig7010.3.1 ID=prot_P-wetherbeei_contig7010.3.1|Name=mRNA_P-wetherbeei_contig7010.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=472bp
MSPLFAAGLLDSGGNRRRRRYAPGRKRRMVKALVRYLLTGDRGGAEEFWE
GQGSGGGGAADLARLAAVAALGASPAGPIGGGSGGITAEMATTFMSASTS
SSSSPSASSPSSLPPSATSSASASLSPAAAARPRVSARMASTTTATPTRP
SVARPPPSIADDAILGAEYDDLDEAELTAADAAADAAAGPPLPGERIPLT
SRVLKWAFERVIRMRATRVEGLEVFVSAKSNRRALSGDLQTVGINWDALA
LPQLQITGGAKVQITGVDLKVLFLVWRRFMAFKRPFEVSGYYVFTNSDVV
GSPLIRRLVQAMLNATLRKLEDYATDRRAVQRTGINVLRVMIKKSKLVVD
GEVVYDKFRVPFNYRTGLGISKRGHVVYLRDPEVFWDNVGGSLTLPLVPL
QAFDVDIGDNARIEHIDIRDGRLTVRARFVLSPIPPLVVADVSKRAAFRY
DLGERLSISFGGLVDNAFRLF*
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mRNA from alignment at P-wetherbeei_contig7010:55..3185+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig7010.3.1 ID=mRNA_P-wetherbeei_contig7010.3.1|Name=mRNA_P-wetherbeei_contig7010.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=3131bp|location=Sequence derived from alignment at P-wetherbeei_contig7010:55..3185+ (Phaeothamnion wetherbeei SAG_119_79)
ACGGACGGTTGCGTGGGGGCCCACGGCTCCCGGGGCGGGGGCGCGGCTGC AGCAAATGTCGCCGCTCTTTGCTGCTGGGCTGTTGGACAGCGGCGGCAAC CGGCGGCGGCGGCGCTATGCCCCCGGGCGGAAGCGGCGGATGGTGAAGGC GCTCGTCCGCTATCTGCTGACGGGCGACCGCGGCGGCGCCGAGGAGTTTT GGGAGGGGCAGGGCAGCGGAGGCGGTGGCGCCGCTGACCTGGCGCGGCTG GCGGCCGTCGCAGCGTTGGGGGCGTCGCCCGCGGGGCCTATCGGCGGCGG CAGCGGCGGCATAACGGCGGAGATGGCGACGACGTTCATGTCGGCGTCGA CGTCTTCCTCTTCTTCTCCTTCGGCGTCTTCTCCGTCGTCGCTGCCGCCA TCAGCGACATCATCGGCATCGGCTTCTCTGTCACCGGCGGCGGCGGCGCG GCCCCGCGTCAGCGCCCGCATGGCGTCGACCACGACGGCTACGCCGACGC GGCCGTCCGTGGCGCGGCCACCGCCGTCCATCGCCGACGACGCTATCCTC GGCGCCGAGTACGATGACTTGGACGAGGCGGAGCTCACCGCCGCCGATGC AGCCGCGGACGCCGCCGCGGGGCCGCCGCTGCCAGGGGAGCGCATTCCGC TGACGAGCCGCGTGCTTAAGTGGGCGTTTGAGCGTGTGATTCGGATGCGG GCGACTAGAGTGGAAGGGCTTGAGGTGTTTGTTTCGGCCAAGAGCAACCG GCGGGCGCTGAGCGGCGACCTGCAGACGGTCGGCATCAACTGGGACGCGC TGGCGCTGCCGCAGCTGCAGATTACCGGCGGCGCCAAGGTGCAAATCACT GGCGTGGACCTCAAAGTGCTGTTCCTCGTCTGGCGGCGCTTCATGGCCTT CAAGCGGCCGTTCGAGGTGTCGGGCTACTACGTCTTCACCAACTCGGACG TGGTCGGCAGCCCGCTGATCCGCCGGCTCGTCCAGGCGATGCTCAATGCG ACGCTGCGCAAGCTGGAGGATTACGCCACGGACCGTCGCGCCGTCCAGCG CACGGGCATCAACGTCCTGCGAGTCATGATCAAAAAATCTAAGCTGGTGG TGGACGGCGAAGTGGTCTACGACAAGTTCCGTGTGCCGTTCAACTACCGG ACAGGACTCGGCATCTCCAAGCGGGGCCACGTCGTGTACCTACGGGACCC AGAAGTGTTCTGGGACAACGTCGGCGGCTCGCTGACGCTGCCTCTGGTGC CGCTTCAGGCGTTCGACGTCGACATCGGCGACAATGCACGCATCGAGCAC ATTGACATCCGGGATGGTCGGCTGACGGTGCGCGCCCGTTTCGTGCTGTC GCCCATCCCGCCGCTGGTAGTAGCCGATGTGTCGAAGCGCGCGGCGTTCC GCTACGACCTCGGAGAGCGACTCTCCATCTCGTTCGGCGGGCTCGTCGAC AATGCATTCCGCCTCTTTTGAGCGAAGCGAAGCGGCCGGCGGCATCGCTT TTTAGCGAACGGCGGCAGCGGCGGCAGCGGCGAGGAGGAGAAAGAAGAAT CGCCGCCGTTGTTGCGCTTGACGGAGAAAGCGGCGGTGGAAGGGGAGAGA GCGGAACAAGACAGAAGGGGCCGGGCAGGCAGGCAGTCACCCTCTCCGTT ACTTTTCTCTTCCCCGGCTTTTCTTTCCTGCCGAGGCCGGTGATGGAGCA GCGGGGTCCACACGTAAGGTAGCGAAAAACTATCCCTCTTTTCTTTTCGT TGGGGAGGCGGCGGCGGCGTGTGTCTGCTGCCCTCAACCCCCCGCGCCCC TACATTTCTTTGGGGCCGAGTGGTCCGCTGCGGCCGCGGCAGGATCGTGA CGGCCCCGAACGGGCGGCTACCCCACGCGCGCTAGAAGCGGCACGCTGCG GCGGTCGCCAGGTGAAAGTCACGACGGGGACGGTGGACATTTGCCTTTTG TCCGCCGGAGGTTACAGGGAAAAGAGGGCGGCGGTTTCGTTCTCACAGCC GGCAGCAGCAAGCAGGCCACCACTCGGCTCGCTGCGCCGGCAAGACCGGG TGATATGGGACAGAATAAGCGTTAAAGGGAGCACTTACGGCGCCCATTGC CTTGGATGCCGTCGCGGACCTCGTTCCACCGCCACCGTGGCGGGCGGGGC AGGCCTCGGCGGTTACCGCAGCTGCGGCGGCGATGGCTGGGAGCCGCGGC GGCGGCGATGGCTGGGAGCCGCGGCGGCATCACGTCTCTGGCGCCGCCAG AGAAGTGTGCGTGCGGCTGGCGCCGCATCGTGGCGGCGGCGACATCGGTG ACGGCGGCAGCTACGCGTGTCGCCGTGGCGTTTGGAAAGCTCTAGACGAG GCCGTAATGAGAGCTGGCTTCTTTTCGGACGTGTCGCGTGCGACTGCTGA CCAGTCAGCGGCGGGGCGGCGGAGCATTAAAGCGGTTGTCGCTGCCCGGT GCCGCCGCCGCCGCTGACGACGGCAGCGCAAAGGCAGCCGGGTAGTAGGG TATGGGGGAGGGGACGGGGGTGGCGGAGCGAGAAAACGACACAGGCTACG GATCATTTGGTTATGGCAGCGGCTTGAGGGCGGCTTGGCGCCGGAAAATT GCTAATAGAGCCGCTGGAGCCGGGGGGAAGAATACGGGAGAAACCACCAT CCCCGCAAAGGCGGTAGGACGGAAGGTAGGTGAGGCAGCGGGCCAGAGCG CACCATTGGAAGTGCACTAGAGGCTCAGCGAGAAGCGGCGGCATGGAGCT CGACAAACGAGCCGAGAAGGAGAGCGGCGGCGGCACGCGATGAGTAATAG GAGGGACAAAGGGCACAAGGGGAGGTAGGGAAGTTAAGCAGCAGGCGGGA TCGCCGGCGGCGTGGCTGGGCGGCGGCAGCGGCGCATCAGCGCCTCTTGC CGCGGGCCGCGGCGTCGGCGCTATTCATTTTCGTGAAAGTGCCATCACTA TATTAGTCGGGGCGTCTGCGGGGGCGGCGCGCGCCGAGAGGTGCGGTTCC TGCGCGGGGAGATGCGCGCTGGCGCGCGGCGGCGGGCAGAGACGGCTTTG GCCGTGCAGCCCGCCCTAGGTGCATGACGGCCTGCTGCGCCGGGAACAGG AACCAAATAATCAAAATGAATCCTTTACGCA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig7010:55..3185+

>mRNA_P-wetherbeei_contig7010.3.1 ID=mRNA_P-wetherbeei_contig7010.3.1|Name=mRNA_P-wetherbeei_contig7010.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=1416bp|location=Sequence derived from alignment at P-wetherbeei_contig7010:55..3185+ (Phaeothamnion wetherbeei SAG_119_79)
ATGTCGCCGCTCTTTGCTGCTGGGCTGTTGGACAGCGGCGGCAACCGGCG
GCGGCGGCGCTATGCCCCCGGGCGGAAGCGGCGGATGGTGAAGGCGCTCG
TCCGCTATCTGCTGACGGGCGACCGCGGCGGCGCCGAGGAGTTTTGGGAG
GGGCAGGGCAGCGGAGGCGGTGGCGCCGCTGACCTGGCGCGGCTGGCGGC
CGTCGCAGCGTTGGGGGCGTCGCCCGCGGGGCCTATCGGCGGCGGCAGCG
GCGGCATAACGGCGGAGATGGCGACGACGTTCATGTCGGCGTCGACGTCT
TCCTCTTCTTCTCCTTCGGCGTCTTCTCCGTCGTCGCTGCCGCCATCAGC
GACATCATCGGCATCGGCTTCTCTGTCACCGGCGGCGGCGGCGCGGCCCC
GCGTCAGCGCCCGCATGGCGTCGACCACGACGGCTACGCCGACGCGGCCG
TCCGTGGCGCGGCCACCGCCGTCCATCGCCGACGACGCTATCCTCGGCGC
CGAGTACGATGACTTGGACGAGGCGGAGCTCACCGCCGCCGATGCAGCCG
CGGACGCCGCCGCGGGGCCGCCGCTGCCAGGGGAGCGCATTCCGCTGACG
AGCCGCGTGCTTAAGTGGGCGTTTGAGCGTGTGATTCGGATGCGGGCGAC
TAGAGTGGAAGGGCTTGAGGTGTTTGTTTCGGCCAAGAGCAACCGGCGGG
CGCTGAGCGGCGACCTGCAGACGGTCGGCATCAACTGGGACGCGCTGGCG
CTGCCGCAGCTGCAGATTACCGGCGGCGCCAAGGTGCAAATCACTGGCGT
GGACCTCAAAGTGCTGTTCCTCGTCTGGCGGCGCTTCATGGCCTTCAAGC
GGCCGTTCGAGGTGTCGGGCTACTACGTCTTCACCAACTCGGACGTGGTC
GGCAGCCCGCTGATCCGCCGGCTCGTCCAGGCGATGCTCAATGCGACGCT
GCGCAAGCTGGAGGATTACGCCACGGACCGTCGCGCCGTCCAGCGCACGG
GCATCAACGTCCTGCGAGTCATGATCAAAAAATCTAAGCTGGTGGTGGAC
GGCGAAGTGGTCTACGACAAGTTCCGTGTGCCGTTCAACTACCGGACAGG
ACTCGGCATCTCCAAGCGGGGCCACGTCGTGTACCTACGGGACCCAGAAG
TGTTCTGGGACAACGTCGGCGGCTCGCTGACGCTGCCTCTGGTGCCGCTT
CAGGCGTTCGACGTCGACATCGGCGACAATGCACGCATCGAGCACATTGA
CATCCGGGATGGTCGGCTGACGGTGCGCGCCCGTTTCGTGCTGTCGCCCA
TCCCGCCGCTGGTAGTAGCCGATGTGTCGAAGCGCGCGGCGTTCCGCTAC
GACCTCGGAGAGCGACTCTCCATCTCGTTCGGCGGGCTCGTCGACAATGC
ATTCCGCCTCTTTTGA
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