mRNA_P-wetherbeei_contig7008.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig7008.1.1
Unique NamemRNA_P-wetherbeei_contig7008.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig7008.1.1 vs. uniprot
Match: A0A3C0TWI5_9PROT (Toluene tolerance protein n=1 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A3C0TWI5_9PROT)

HSP 1 Score: 257 bits (657), Expect = 6.200e-84
Identity = 129/200 (64.50%), Postives = 159/200 (79.50%), Query Frame = 1
Query:   43 LLAATLSFHITARAAVAPSAFVESLTYSAFETLRDPAISEKERFSKFRALLSDHVDMPRIGRFVLGANWKRADATQQAEYQKLFHDYVISAYAGRLKDYTDAKISIKGTTSTGKGEHLVSTLITHPKNPEPVHVDWRLRENAGGLQVLDMSIEGISMALTQRSEFASIIQQNNGDINALLIRLRSSAEAINDGKQISVTK 642
            LLA T+  H TA+AA APSAFV  LT +AF  LR   ISE ERFS+FR LLS+ VD+ R+GRFVLG NW+RA+  QQAEYQ LF DYVI+AYAGRLKDYT++K +I  T  TG+ E++V TL  HPKNPEPVHVDWRLRE    L+V+D++IEGISMALTQRSEF++IIQQNNGDI AL+ RLR+ +  IN GK+++V++
Sbjct:   28 LLAITMFLHATAQAAAAPSAFVTELTNNAFAALRAKDISEAERFSRFRELLSEGVDLQRVGRFVLGPNWRRANPEQQAEYQALFSDYVIAAYAGRLKDYTESKYTISKTLRTGENEYIVKTLFVHPKNPEPVHVDWRLREEGEALKVIDLTIEGISMALTQRSEFSAIIQQNNGDIGALIERLRNISADINAGKEVTVSQ 227          
BLAST of mRNA_P-wetherbeei_contig7008.1.1 vs. uniprot
Match: A0A353LU67_9PROT (Toluene tolerance protein n=5 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A353LU67_9PROT)

HSP 1 Score: 193 bits (490), Expect = 1.350e-58
Identity = 92/188 (48.94%), Postives = 129/188 (68.62%), Query Frame = 1
Query:   76 ARAAVAPSAFVESLTYSAFETLRDPAISEKERFSKFRALLSDHVDMPRIGRFVLGANWKRADATQQAEYQKLFHDYVISAYAGRLKDYTDAKISIKGTTSTGKGEHLVSTLITHPKNPEPVHVDWRLRENAGGLQVLDMSIEGISMALTQRSEFASIIQQNNGDINALLIRLRSSAEAINDGKQISVT 639
            A A+  P  FV+ L   AF  LRD  + +  RF KFR+LL + VD+PR+GRFVLG  W+RA   Q++EY  LF DYVI++YA RL +Y  + +++KG  S    EH+V+TL+  PK  EP+ VDWR+R++  GL+++D+ IEGISMA++QRSEFAS+IQ N GD+  LL RLR  A  I   +++S +
Sbjct:   40 AIASPTPQQFVDDLANKAFAVLRDDTLEDAARFQKFRSLLREGVDLPRVGRFVLGKYWRRATPEQRSEYDSLFGDYVIASYASRLSEYAHSTVTVKGVVSNSGKEHIVTTLVRAPKAVEPIRVDWRVRDSGQGLKIVDIMIEGISMAISQRSEFASVIQSNGGDMTVLLDRLRGVAATIQPPEKVSAS 227          
BLAST of mRNA_P-wetherbeei_contig7008.1.1 vs. uniprot
Match: A0A154WFP3_9PROT (Uncharacterized protein n=2 Tax=Oceanibaculum pacificum TaxID=580166 RepID=A0A154WFP3_9PROT)

HSP 1 Score: 147 bits (370), Expect = 6.890e-41
Identity = 69/164 (42.07%), Postives = 108/164 (65.85%), Query Frame = 1
Query:  103 FVESLTYSAFETLRDPAISEKERFSKFRALLSDHVDMPRIGRFVLGANWKRADATQQAEYQKLFHDYVISAYAGRLKDYTDAKISIKGTTSTGKGEHLVSTLITHPKNPEPVHVDWRLRENAGGLQVLDMSIEGISMALTQRSEFASIIQQNNGDINALLIRLR 594
            F++ L   A +T+ D +++E+ER SKFR LL+ + D+P IGRFVLG  W+ A   QQ EY KLF + ++  YA R ++Y+  K+++    + G    LV + I  P  P PV V WRL  + GG +++D+ +EG+SM++TQRS+++S+IQ N G+ +ALL  +R
Sbjct:   29 FIQELGGKAIDTITDKSLAEEERLSKFRTLLNQNFDVPGIGRFVLGRYWRTATPEQQQEYLKLFEESIVRTYAARFREYSGEKLAVDNARADGDRFMLVDSKIQRPSGP-PVAVTWRLFNDNGGFKIVDVVVEGVSMSVTQRSDYSSVIQSNGGNFDALLKAMR 191          
BLAST of mRNA_P-wetherbeei_contig7008.1.1 vs. uniprot
Match: A0A2S2CQ82_9PROT (Toluene tolerance protein n=1 Tax=Azospirillum thermophilum TaxID=2202148 RepID=A0A2S2CQ82_9PROT)

HSP 1 Score: 145 bits (366), Expect = 3.370e-40
Identity = 77/198 (38.89%), Postives = 114/198 (57.58%), Query Frame = 1
Query:    1 MFMRSKFIPLTALMLLAATLSFHITARAAVAPSAFVESLTYSAFETLRDPAISEKERFSKFRALLSDHVDMPRIGRFVLGANWKRADATQQAEYQKLFHDYVISAYAGRLKDYTDAKISIKGTTSTGKGEHLVSTLITHPKNPEPVHVDWRLRENAGGLQVLDMSIEGISMALTQRSEFASIIQQNNGDINALLIRLR 594
            M  R  F+   AL+ +++     + A+A     AF++SL   A  T  D ++   +   KFR LL    D+P IGRFVLG  W +A   QQ EYQKLF   +++ YA R  +Y+     I G+   G  + +V+T I  P  P PV+VDWR+R+   G +++D+ +EG+SM++TQRSEFAS+I  + G I  LL  +R
Sbjct:    1 MLTRRLFVACAALLAVSSWAGRSVLAQADAGAGAFIQSLGNEAIATFSDKSVPRDQSVQKFRTLLYRGFDVPYIGRFVLGRFWNQATPQQQDEYQKLFEKMIVATYADRFVEYSGETFKITGSRPEGDTDAVVTTQIVRPNGP-PVNVDWRVRKRDAGFKIIDVIVEGVSMSVTQRSEFASVISSSGGQIEGLLRAMR 197          
BLAST of mRNA_P-wetherbeei_contig7008.1.1 vs. uniprot
Match: UPI00034A5786 (ABC transporter substrate-binding protein n=1 Tax=Azospirillum sp. B506 TaxID=137721 RepID=UPI00034A5786)

HSP 1 Score: 145 bits (365), Expect = 5.500e-40
Identity = 69/166 (41.57%), Postives = 103/166 (62.05%), Query Frame = 1
Query:   97 SAFVESLTYSAFETLRDPAISEKERFSKFRALLSDHVDMPRIGRFVLGANWKRADATQQAEYQKLFHDYVISAYAGRLKDYTDAKISIKGTTSTGKGEHLVSTLITHPKNPEPVHVDWRLRENAGGLQVLDMSIEGISMALTQRSEFASIIQQNNGDINALLIRLR 594
            SAF++ L   A  T  D ++S  +   +FR LL    D+P IGR+VLG  W  A+  Q+AEYQKLF   +++ YA R  +Y+     I G T  G+ + +V+T I  P  P PV+V WR+R+ A   +++D+ +E +SM +TQR EFAS+I+QNNG ++ L+  LR
Sbjct:   38 SAFIQKLGNDAIATFSDKSLSRDQAIQRFRTLLYAGFDVPYIGRWVLGRYWNSANEAQRAEYQKLFEQLIVNTYAERFVEYSGETFKITGVTPAGEADSMVTTQIVRPNGP-PVNVSWRVRKGAADYKIIDVVVENVSMGVTQRQEFASVIEQNNGRVDGLIQALR 202          
BLAST of mRNA_P-wetherbeei_contig7008.1.1 vs. uniprot
Match: B6IP24_RHOCS (Toluene tolerance transporter, putative n=1 Tax=Rhodospirillum centenum (strain ATCC 51521 / SW) TaxID=414684 RepID=B6IP24_RHOCS)

HSP 1 Score: 145 bits (365), Expect = 6.710e-40
Identity = 70/168 (41.67%), Postives = 104/168 (61.90%), Query Frame = 1
Query:  103 FVESLTYSAFETLRDPAISEKERFSKFRALLSDHVDMPRIGRFVLGANWKRADATQQAEYQKLFHDYVISAYAGRLKDYTDAKISIKGTTSTGKGEHLVSTLITHPKNPEPVHVDWRLRENAGGLQVLDMSIEGISMALTQRSEFASIIQQNNGDINALLIRLRSSAE 606
            FVESL   A   L DP +++++   +FR LL+++ D+  IGRFVLG  W  A   Q+ EY KLF   ++  YA R   Y      +  + + G  + +VS+ +  P  P PV VDWR+R   GG +++D+ +EG+SM++TQRSEFAS+I+ N G+I+ALL  LR  A+
Sbjct:   45 FVESLGDRAIAVLADPKVTDEQAVEEFRRLLNENFDVTTIGRFVLGRYWNTASEAQRQEYMKLFERMIVEVYAQRFNQYAGETFEVTASRADGTKDAIVSSQVLRPNGP-PVKVDWRVRARDGGYRIVDVVVEGVSMSVTQRSEFASVIESNGGNIDALLDALRKRAQ 211          
BLAST of mRNA_P-wetherbeei_contig7008.1.1 vs. uniprot
Match: A0A2U1VHH0_9PROT (Toluene tolerance protein n=1 Tax=Azospirillum sp. TSO35-2 TaxID=716796 RepID=A0A2U1VHH0_9PROT)

HSP 1 Score: 143 bits (361), Expect = 2.200e-39
Identity = 68/166 (40.96%), Postives = 103/166 (62.05%), Query Frame = 1
Query:   97 SAFVESLTYSAFETLRDPAISEKERFSKFRALLSDHVDMPRIGRFVLGANWKRADATQQAEYQKLFHDYVISAYAGRLKDYTDAKISIKGTTSTGKGEHLVSTLITHPKNPEPVHVDWRLRENAGGLQVLDMSIEGISMALTQRSEFASIIQQNNGDINALLIRLR 594
            SAF++ L   A  T  D ++S  +   +FR LL+   D+P IGR+VLG  W  A   Q+AEYQKLF   +++ YA R  +Y+     I GT   G+ + +V+T I  P  P PV+V WR+R+   G +++D+ +E +SM +TQR EFAS+++QN G ++AL+  LR
Sbjct:   38 SAFIQKLGNDAIATFSDKSLSRPQATERFRVLLNAGFDVPYIGRWVLGRYWNSATEPQRAEYQKLFEQMIVNTYAERFVEYSGETFKITGTAPAGEADSMVTTQIVRPSGP-PVNVSWRVRKTPTGFKIIDVVVENVSMGVTQRQEFASVVEQNGGRVDALIQALR 202          
BLAST of mRNA_P-wetherbeei_contig7008.1.1 vs. uniprot
Match: UPI001EFCCF42 (ABC transporter substrate-binding protein n=1 Tax=Oleisolibacter albus TaxID=2171757 RepID=UPI001EFCCF42)

HSP 1 Score: 143 bits (360), Expect = 3.570e-39
Identity = 76/198 (38.38%), Postives = 112/198 (56.57%), Query Frame = 1
Query:   40 MLLAATLSFHITA---RAAVAPSAFVESLTYSAFETLRDPAISEKERFSKFRALLSDHVDMPRIGRFVLGANWKRADATQQAEYQKLFHDYVISAYAGRLKDYTDAKISIKGTTSTGKGEHLVSTLITHPKNPEPVHVDWRLRENAGGLQVLDMSIEGISMALTQRSEFASIIQQNNGDINALLIRLRSSAEAINDGK 624
            +LLA  ++F + A   +A  APS FV+ L   A   L DP +S+ +    FR LL+D+ D+  IGRFVLG  W  A   QQ EY  LF   ++  YA R   Y+     + G+   G+ + +V++ +  P  P PV+V WR+R   GG +++D+ +E +SM+ TQRSEFAS+I+ N G   ALL  LR     +  G+
Sbjct:   14 LLLAGLVAFALPAAAQQAGKAPSDFVQKLGDRAISVLADPKVSKPQAVEVFRELLNDNFDVQTIGRFVLGRYWNTAQPAQQKEYMSLFEQMIVEVYAERFSQYSGETFKVTGSQPAGERDAVVTSQVLRPSGP-PVNVAWRVRGKDGGFKIVDVVVENVSMSQTQRSEFASVIENNGGRFEALLDALRQRIRTVQTGQ 210          
BLAST of mRNA_P-wetherbeei_contig7008.1.1 vs. uniprot
Match: A0A845MFE4_9PROT (ABC transporter substrate-binding protein n=2 Tax=Sneathiella chungangensis TaxID=1418234 RepID=A0A845MFE4_9PROT)

HSP 1 Score: 141 bits (356), Expect = 1.170e-38
Identity = 68/165 (41.21%), Postives = 107/165 (64.85%), Query Frame = 1
Query:  100 AFVESLTYSAFETLRDPAISEKERFSKFRALLSDHVDMPRIGRFVLGANWKRADATQQAEYQKLFHDYVISAYAGRLKDYTDAKISIKGTTSTGKGEHLVSTLITHPKNPEPVHVDWRLRENAGGLQVLDMSIEGISMALTQRSEFASIIQQNNGDINALLIRLR 594
            A V+++   A +TL D ++SEK++   F   L +  DMPRIGRFVLG  W+ A + QQ E+ K+F D+++++Y+ ++  Y+   + IK  TS    E LV ++IT P  P P+ +DWR+R+   G +++D+ IEGISMA T RSEFAS+I Q    ++ L+ +L+
Sbjct:   36 ALVKNIGDEAVKTLADTSLSEKQKQEHFEKFLDNSFDMPRIGRFVLGQYWRDASSEQQTEFLKVFRDFMVASYSEKIGSYSGENLEIKDATSLNDKESLVHSVITRPNGP-PIKLDWRVRDTGNGEKIVDVIIEGISMAQTHRSEFASVISQPGMGVDGLINKLK 199          
BLAST of mRNA_P-wetherbeei_contig7008.1.1 vs. uniprot
Match: A0A1X7Q8P8_AZOLI (Phospholipid transport system substrate-binding protein n=4 Tax=Azospirillum TaxID=191 RepID=A0A1X7Q8P8_AZOLI)

HSP 1 Score: 140 bits (354), Expect = 2.470e-38
Identity = 68/165 (41.21%), Postives = 99/165 (60.00%), Query Frame = 1
Query:  100 AFVESLTYSAFETLRDPAISEKERFSKFRALLSDHVDMPRIGRFVLGANWKRADATQQAEYQKLFHDYVISAYAGRLKDYTDAKISIKGTTSTGKGEHLVSTLITHPKNPEPVHVDWRLRENAGGLQVLDMSIEGISMALTQRSEFASIIQQNNGDINALLIRLR 594
            AF++ L   A  T  D +    +   KFR LL+   D+P IGR+VLG  W +A   QQAEYQKLF   +++ YA R  +Y+     I GT   G+ + +V+T I  P  P P++V WR+R+     +++DM +E +SM +TQR EFAS++QQN G I+ L+  LR
Sbjct:   39 AFIQKLGNDAIATFSDKSTPRDQALVKFRTLLNQGFDVPYIGRWVLGRYWNQATEAQQAEYQKLFEQLIVTTYAERFIEYSGETFRIAGTAPEGETDTMVTTQIVRPNGP-PINVSWRVRKKGADYKIIDMVVENVSMGVTQRQEFASVVQQNGGKIDGLIQALR 202          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig7008.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A3C0TWI5_9PROT6.200e-8464.50Toluene tolerance protein n=1 Tax=Alphaproteobacte... [more]
A0A353LU67_9PROT1.350e-5848.94Toluene tolerance protein n=5 Tax=Alphaproteobacte... [more]
A0A154WFP3_9PROT6.890e-4142.07Uncharacterized protein n=2 Tax=Oceanibaculum paci... [more]
A0A2S2CQ82_9PROT3.370e-4038.89Toluene tolerance protein n=1 Tax=Azospirillum the... [more]
UPI00034A57865.500e-4041.57ABC transporter substrate-binding protein n=1 Tax=... [more]
B6IP24_RHOCS6.710e-4041.67Toluene tolerance transporter, putative n=1 Tax=Rh... [more]
A0A2U1VHH0_9PROT2.200e-3940.96Toluene tolerance protein n=1 Tax=Azospirillum sp.... [more]
UPI001EFCCF423.570e-3938.38ABC transporter substrate-binding protein n=1 Tax=... [more]
A0A845MFE4_9PROT1.170e-3841.21ABC transporter substrate-binding protein n=2 Tax=... [more]
A0A1X7Q8P8_AZOLI2.470e-3841.21Phospholipid transport system substrate-binding pr... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig7008contigP-wetherbeei_contig7008:157..801 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog414684.RC1_2053
PFAMsMlaC
Model size645
Max annot lvl204441|Rhodospirillales
KEGG koko:K07323
KEGG TC3.A.1.27.3
KEGG Pathwayko02010,map02010
KEGG ModuleM00210
Hectar predicted targeting categorysignal peptide
Exons1
Evalue1.1e-40
EggNOG OGsCOG2854@1|root,COG2854@2|Bacteria,1NKFA@1224|Proteobacteria,2UAPV@28211|Alphaproteobacteria,2JSSQ@204441|Rhodospirillales
DescriptionCOG2854 ABC-type transport system involved in resistance to organic solvents, auxiliary component
Cds size645
COG categoryQ
BRITEko00000,ko00001,ko00002,ko02000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186952.0860398-CDS-P-wetherbeei_contig7008:156..8011683186952.0860398-CDS-P-wetherbeei_contig7008:156..801Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig7008 157..801 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig7008.1.1prot_P-wetherbeei_contig7008.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig7008 157..801 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig7008.1.1

>prot_P-wetherbeei_contig7008.1.1 ID=prot_P-wetherbeei_contig7008.1.1|Name=mRNA_P-wetherbeei_contig7008.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=215bp
MFMRSKFIPLTALMLLAATLSFHITARAAVAPSAFVESLTYSAFETLRDP
AISEKERFSKFRALLSDHVDMPRIGRFVLGANWKRADATQQAEYQKLFHD
YVISAYAGRLKDYTDAKISIKGTTSTGKGEHLVSTLITHPKNPEPVHVDW
RLRENAGGLQVLDMSIEGISMALTQRSEFASIIQQNNGDINALLIRLRSS
AEAINDGKQISVTK*
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mRNA from alignment at P-wetherbeei_contig7008:157..801-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig7008.1.1 ID=mRNA_P-wetherbeei_contig7008.1.1|Name=mRNA_P-wetherbeei_contig7008.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=645bp|location=Sequence derived from alignment at P-wetherbeei_contig7008:157..801- (Phaeothamnion wetherbeei SAG_119_79)
ATGTTCATGCGTTCGAAATTCATCCCGCTCACGGCTCTCATGTTGTTGGC CGCAACACTTTCCTTTCACATCACGGCACGGGCCGCTGTCGCCCCGTCTG CTTTTGTTGAAAGCCTGACCTATAGCGCTTTTGAGACGCTGCGCGATCCC GCCATCAGCGAAAAAGAGCGCTTTTCCAAATTCCGCGCTTTACTAAGCGA CCATGTTGACATGCCGCGCATCGGACGCTTCGTCCTTGGGGCCAACTGGA AGCGCGCGGATGCAACCCAACAGGCTGAATATCAGAAGCTGTTCCATGAT TACGTCATCTCCGCCTATGCGGGCCGTCTGAAAGATTACACCGATGCAAA AATCAGCATCAAAGGCACCACCAGCACGGGCAAGGGTGAACATCTTGTCT CGACCCTGATCACCCATCCTAAAAATCCTGAACCGGTGCATGTCGATTGG CGCCTGCGTGAAAATGCAGGTGGACTGCAGGTTCTCGACATGTCGATAGA GGGCATTAGCATGGCGCTGACCCAGCGATCTGAATTTGCCTCTATCATTC AGCAAAATAATGGCGACATTAACGCCCTGCTGATACGCCTGCGCAGTTCC GCCGAGGCCATCAATGATGGCAAGCAGATTTCAGTCACCAAATAA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig7008:157..801-

>mRNA_P-wetherbeei_contig7008.1.1 ID=mRNA_P-wetherbeei_contig7008.1.1|Name=mRNA_P-wetherbeei_contig7008.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=645bp|location=Sequence derived from alignment at P-wetherbeei_contig7008:157..801- (Phaeothamnion wetherbeei SAG_119_79)
ATGTTCATGCGTTCGAAATTCATCCCGCTCACGGCTCTCATGTTGTTGGC
CGCAACACTTTCCTTTCACATCACGGCACGGGCCGCTGTCGCCCCGTCTG
CTTTTGTTGAAAGCCTGACCTATAGCGCTTTTGAGACGCTGCGCGATCCC
GCCATCAGCGAAAAAGAGCGCTTTTCCAAATTCCGCGCTTTACTAAGCGA
CCATGTTGACATGCCGCGCATCGGACGCTTCGTCCTTGGGGCCAACTGGA
AGCGCGCGGATGCAACCCAACAGGCTGAATATCAGAAGCTGTTCCATGAT
TACGTCATCTCCGCCTATGCGGGCCGTCTGAAAGATTACACCGATGCAAA
AATCAGCATCAAAGGCACCACCAGCACGGGCAAGGGTGAACATCTTGTCT
CGACCCTGATCACCCATCCTAAAAATCCTGAACCGGTGCATGTCGATTGG
CGCCTGCGTGAAAATGCAGGTGGACTGCAGGTTCTCGACATGTCGATAGA
GGGCATTAGCATGGCGCTGACCCAGCGATCTGAATTTGCCTCTATCATTC
AGCAAAATAATGGCGACATTAACGCCCTGCTGATACGCCTGCGCAGTTCC
GCCGAGGCCATCAATGATGGCAAGCAGATTTCAGTCACCAAATAA
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