mRNA_P-wetherbeei_contig70.10.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig70.10.1
Unique NamemRNA_P-wetherbeei_contig70.10.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
[Close]
BLAST of mRNA_P-wetherbeei_contig70.10.1 vs. uniprot
Match: D8LHN0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LHN0_ECTSI)

HSP 1 Score: 207 bits (526), Expect = 1.010e-64
Identity = 109/190 (57.37%), Postives = 141/190 (74.21%), Query Frame = 1 
Query:    1 DGIAMPETFAPDQYRLVVIAAAMEQVAYTAAMLAYARQTLAGLRAPLSKADEDAARRALMVLFETDDVSSPDIAAQVVEATRAAARRAGKVLPAAAAESLATRAANVLADGACPVYRLYLRRVLGLAKGVLLASKLDEPGFAHMLRGAGLAEYQEFMTEKVARQLLIIERHNEAVFAPFYNAIIPLSLRT 570
            +G+A+PET   D+YRLVVIAAA EQ AYTA+++A+ARQTL  +R PL++ADE+  R ALMVLFET+DV+S DI AQV E TR  A  AGKVLPA     L+ R+ NVL  G CPVY+++LRR LGL +  L+   + E  F   LR AGL +Y++F+ ++V R L++IERHNEAVFA FYN IIPL+L+T
Sbjct:    3 EGVAVPETLMLDRYRLVVIAAAAEQAAYTASLVAFARQTLGAVRIPLARADEERVRDALMVLFETEDVTSADICAQVAEMTRVVAVNAGKVLPANQLSVLSARSRNVLTTGDCPVYKIFLRRTLGLLRDTLVEGGMSEERFVEALRKAGLLDYKDFLLQRVVRPLVVIERHNEAVFATFYNEIIPLALKT 192
[Close]
BLAST of mRNA_P-wetherbeei_contig70.10.1 vs. uniprot
Match: A0A6H5K7E8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K7E8_9PHAE)

HSP 1 Score: 202 bits (514), Expect = 9.630e-57
Identity = 107/190 (56.32%), Postives = 139/190 (73.16%), Query Frame = 1 
Query:    1 DGIAMPETFAPDQYRLVVIAAAMEQVAYTAAMLAYARQTLAGLRAPLSKADEDAARRALMVLFETDDVSSPDIAAQVVEATRAAARRAGKVLPAAAAESLATRAANVLADGACPVYRLYLRRVLGLAKGVLLASKLDEPGFAHMLRGAGLAEYQEFMTEKVARQLLIIERHNEAVFAPFYNAIIPLSLRT 570
            +G+A+PET   D+YRLVVIAAA EQ AYTA+++A+ARQTL  +R PL++ADE+  R ALMVLFET+DV+S DI AQV E TR  +  AGKVLPA     L+ R+ NVL  G CPVY+++LRR L L +  L+   + E  F   LR AGL +Y++F+ ++V R L++IERHNEAVFA FYN IIPL+L T
Sbjct: 1107 EGVAVPETLMLDRYRLVVIAAAAEQAAYTASLVAFARQTLGAVRIPLARADEERIRDALMVLFETEDVTSADICAQVAEMTRVVSVNAGKVLPANQLSVLSARSRNVLTTGDCPVYKIFLRRTLALLRDTLVEGGMSEERFVEALRKAGLLDYKDFLLQRVVRPLVVIERHNEAVFATFYNEIIPLALNT 1296
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig70.10.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LHN0_ECTSI1.010e-6457.37Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5K7E8_9PHAE9.630e-5756.32Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig70contigP-wetherbeei_contig70:15015..15584 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size570
Hectar predicted targeting categoryother localisation
Exons1
Ec32 ortholog descriptionT-complex 11
Ec32 orthologEc-26_003730.1
Cds size558
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186951.3756993-CDS-P-wetherbeei_contig70:15014..155721683186951.3756993-CDS-P-wetherbeei_contig70:15014..15572Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig70 15015..15572 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186951.3868144-UTR-P-wetherbeei_contig70:15572..155841683186951.3868144-UTR-P-wetherbeei_contig70:15572..15584Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig70 15573..15584 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig70.10.1prot_P-wetherbeei_contig70.10.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig70 15015..15572 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig70.10.1

>prot_P-wetherbeei_contig70.10.1 ID=prot_P-wetherbeei_contig70.10.1|Name=mRNA_P-wetherbeei_contig70.10.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=186bp
MPETFAPDQYRLVVIAAAMEQVAYTAAMLAYARQTLAGLRAPLSKADEDA
ARRALMVLFETDDVSSPDIAAQVVEATRAAARRAGKVLPAAAAESLATRA
ANVLADGACPVYRLYLRRVLGLAKGVLLASKLDEPGFAHMLRGAGLAEYQ
EFMTEKVARQLLIIERHNEAVFAPFYNAIIPLSLRT
back to top

mRNA from alignment at P-wetherbeei_contig70:15015..15584-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig70.10.1 ID=mRNA_P-wetherbeei_contig70.10.1|Name=mRNA_P-wetherbeei_contig70.10.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=570bp|location=Sequence derived from alignment at P-wetherbeei_contig70:15015..15584- (Phaeothamnion wetherbeei SAG_119_79)
GACGGCATTGCCATGCCGGAGACGTTCGCGCCGGACCAGTACCGGCTGGT
GGTGATCGCAGCAGCAATGGAGCAGGTGGCTTACACGGCGGCCATGCTGG
CCTACGCCCGGCAGACGCTAGCCGGACTGCGCGCGCCGCTCTCAAAGGCC
GACGAGGACGCTGCCCGGCGCGCCCTCATGGTGCTCTTCGAGACGGACGA
CGTTTCGAGCCCCGACATCGCCGCGCAGGTCGTCGAAGCGACGCGCGCTG
CGGCGCGACGGGCTGGCAAGGTCCTGCCGGCGGCCGCGGCGGAGTCGCTG
GCGACGCGAGCGGCCAATGTGCTGGCGGATGGCGCCTGCCCCGTCTACCG
GCTGTACCTGCGGCGCGTGCTCGGGCTGGCCAAGGGCGTCCTGCTTGCAA
GCAAGCTGGACGAGCCGGGCTTTGCGCACATGCTGCGCGGGGCCGGGCTC
GCCGAGTACCAGGAGTTCATGACGGAGAAGGTGGCGCGGCAGCTTCTGAT
TATCGAGCGGCACAACGAGGCCGTCTTTGCACCCTTCTACAATGCAATCA
TCCCGCTGAGCCTGCGGACA
back to top

Coding sequence (CDS) from alignment at P-wetherbeei_contig70:15015..15584-

>mRNA_P-wetherbeei_contig70.10.1 ID=mRNA_P-wetherbeei_contig70.10.1|Name=mRNA_P-wetherbeei_contig70.10.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=558bp|location=Sequence derived from alignment at P-wetherbeei_contig70:15015..15584- (Phaeothamnion wetherbeei SAG_119_79)
ATGCCGGAGACGTTCGCGCCGGACCAGTACCGGCTGGTGGTGATCGCAGC
AGCAATGGAGCAGGTGGCTTACACGGCGGCCATGCTGGCCTACGCCCGGC
AGACGCTAGCCGGACTGCGCGCGCCGCTCTCAAAGGCCGACGAGGACGCT
GCCCGGCGCGCCCTCATGGTGCTCTTCGAGACGGACGACGTTTCGAGCCC
CGACATCGCCGCGCAGGTCGTCGAAGCGACGCGCGCTGCGGCGCGACGGG
CTGGCAAGGTCCTGCCGGCGGCCGCGGCGGAGTCGCTGGCGACGCGAGCG
GCCAATGTGCTGGCGGATGGCGCCTGCCCCGTCTACCGGCTGTACCTGCG
GCGCGTGCTCGGGCTGGCCAAGGGCGTCCTGCTTGCAAGCAAGCTGGACG
AGCCGGGCTTTGCGCACATGCTGCGCGGGGCCGGGCTCGCCGAGTACCAG
GAGTTCATGACGGAGAAGGTGGCGCGGCAGCTTCTGATTATCGAGCGGCA
CAACGAGGCCGTCTTTGCACCCTTCTACAATGCAATCATCCCGCTGAGCC
TGCGGACA
back to top