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Homology
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Stop | 1 |
| Start | 1 |
| Model size | 1903 |
| Hectar predicted targeting category | other localisation |
| Exons | 3 |
| Ec32 ortholog description | expressed unknown protein |
| Ec32 ortholog | Ec-27_003990.1 |
| Cds size | 1005 |
Relationships
The following UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1683186950.1243422-UTR-P-wetherbeei_contig699:861..1159 | 1683186950.1243422-UTR-P-wetherbeei_contig699:861..1159 | Phaeothamnion wetherbeei SAG_119_79 | UTR | P-wetherbeei_contig699 862..1159 + |
| 1683186950.168757-UTR-P-wetherbeei_contig699:2676..3276 | 1683186950.168757-UTR-P-wetherbeei_contig699:2676..3276 | Phaeothamnion wetherbeei SAG_119_79 | UTR | P-wetherbeei_contig699 2677..3276 + |
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1683186950.1353598-CDS-P-wetherbeei_contig699:1159..1268 | 1683186950.1353598-CDS-P-wetherbeei_contig699:1159..1268 | Phaeothamnion wetherbeei SAG_119_79 | CDS | P-wetherbeei_contig699 1160..1268 + |
| 1683186950.1463509-CDS-P-wetherbeei_contig699:1487..1543 | 1683186950.1463509-CDS-P-wetherbeei_contig699:1487..1543 | Phaeothamnion wetherbeei SAG_119_79 | CDS | P-wetherbeei_contig699 1488..1543 + |
| 1683186950.1569521-CDS-P-wetherbeei_contig699:1836..2676 | 1683186950.1569521-CDS-P-wetherbeei_contig699:1836..2676 | Phaeothamnion wetherbeei SAG_119_79 | CDS | P-wetherbeei_contig699 1837..2676 + |
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-wetherbeei_contig699.2.1 >prot_P-wetherbeei_contig699.2.1 ID=prot_P-wetherbeei_contig699.2.1|Name=mRNA_P-wetherbeei_contig699.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=335bp
MQEQLQQSRAAYDARCQQFAHSVSDECEQEVTKSVQALREEWAKTQKDIV
TVIQEGWKENRETMVLMRALHEEMTEQQRHHLEAFRADIYAAACEECEGR
AAMAAAAAADEHEEDKAGALLLAEVRHEEETRQLRETVEALRRQLAENGG
GGGGGGGAAAAAGAAGAAAAAVGGGRNNNGSGVGTSGGCGASATGGSARG
SRGRRGGDGGTGGGTASASAGGGGDGSSGGGANRGSGAAAAEVNNGSPAA
QRVAPRRTVGSPVLQRRVLHLPRRREQAAEAPQAGPAQVAAVAAESPVAQ
RQRPRNTNGVVTPEQAPAPSASSGQNGRGRGAAR* back to topmRNA from alignment at P-wetherbeei_contig699:862..3276+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_P-wetherbeei_contig699.2.1 ID=mRNA_P-wetherbeei_contig699.2.1|Name=mRNA_P-wetherbeei_contig699.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=2415bp|location=Sequence derived from alignment at P-wetherbeei_contig699:862..3276+ (Phaeothamnion wetherbeei SAG_119_79)
CGCCAAGGAGGCCGAGCAGGAGAAGCGCGATGCGGTGCATTCTTAAAGGC
CGAGGATTCGCTTTGGGTTTCTTTAGCATGTTTTAGGTACCGTTCTCCGA
ATCTGAAGTCTGTGGGCGTAGTTGGTCGTTGTTTGCACTGTTGCTTCTTC
CTCGGGTACCTTCGAAAACCACTCACTTCATTTTTTGCTCCGTTCATTGT
ATGGGCCGCGCCGCCCCGCGTTCCGCCAACTCCATCTCCCACAGGCGGTG
GCGCTGCAGCACCAGTTCGACCGGCGCACTGAAGGGCTGCAACAGGAGAT
GCAGGAGCAGCTGCAGCAGTCGCGGGCAGCGTACGACGCCCGCTGCCAGC
AATTCGCGCACTCCGTTTCGGACGAGTGCGAGCAGGAGGTCACCAAGAGC
GTCCAGGGTCAGTTGACTACTTGATTCAGCCCGCCAGCGGCGGGGGGAAG
GAGCAGAGGGAACAGTTTGAGCGGGAGGTGAGGTGCGTCAATCGTGGCTG
CTGTTGCGGCCGCCGGCGCCGCCGCCAGAATTGCTGTGAAGGATAGGGTA
TGCCAACGTTTCAGAATTGCATGTTTTGAGGCCAACGACTAACACTTAAC
TCTCCTTATCTGACCCCGATTTCCAGCACTACGGGAAGAGTGGGCGAAGA
CGCAGAAGGACATCGTTACCGTGATTCAAGAGGTGAGCGAGGAAGAGAGA
GGGAAGAGCAAGCCGCTGCTGCCTTGCCTGGTGCTGTTCCTTGGTGGCTC
GCTGTGCCACTACCGCAGACCATCAGCCGCATCGCTGTTCTTGCACAGCC
ACTGCCGCTGGTGCCACCGTCGCCACTCCGCTGCTGCTGTCATGACGGCC
GCTGCCGCTGCCCATTCCCACCGAGGGGTTGCCCTTGCTGCCTTCTTCCT
TTACTTTCTTAAGCTTACTTCCCCTGCTGTCATCTCTGCCTACTCTGCGA
ACCCTCCACACAAAAACATTCACAGGGCTGGAAAGAGAACCGCGAGACCA
TGGTGCTGATGCGCGCGCTGCACGAGGAGATGACGGAGCAGCAGCGCCAT
CACCTCGAGGCCTTCCGCGCCGACATCTACGCCGCCGCGTGCGAGGAATG
CGAGGGACGGGCTGCGATGGCGGCGGCCGCCGCAGCGGACGAGCACGAAG
AGGACAAGGCGGGGGCTCTGCTACTCGCGGAGGTGCGCCACGAGGAGGAG
ACACGCCAGCTGCGAGAGACAGTCGAGGCGCTACGTCGCCAGCTCGCCGA
GAACGGTGGCGGCGGCGGTGGCGGTGGCGGCGCTGCCGCTGCTGCCGGTG
CTGCCGGCGCTGCAGCCGCCGCCGTCGGCGGCGGCAGAAACAACAACGGT
TCGGGCGTCGGCACCAGCGGTGGTTGCGGCGCAAGTGCCACCGGTGGTAG
TGCTCGTGGAAGCCGCGGCCGCCGCGGCGGTGATGGTGGCACCGGCGGAG
GTACTGCCAGCGCCAGTGCCGGTGGCGGCGGCGACGGCAGCAGTGGCGGC
GGAGCGAATCGTGGCTCTGGAGCTGCGGCGGCGGAGGTAAACAATGGCTC
TCCTGCCGCACAACGTGTTGCTCCTCGCCGGACCGTCGGCAGCCCGGTAC
TGCAGCGCCGCGTGCTCCACTTGCCGCGCCGCAGGGAACAGGCTGCGGAA
GCGCCGCAGGCGGGGCCGGCGCAAGTGGCGGCAGTGGCAGCCGAGTCGCC
GGTGGCGCAGCGGCAGCGGCCGCGGAACACCAACGGCGTCGTGACCCCCG
AGCAGGCCCCGGCTCCTTCGGCATCCAGCGGCCAGAACGGCCGCGGCCGC
GGCGCGGCTCGCTGAACCCGCCTGCCAAGGCAAGCGGCATCCTGGATCCA
AAGTATGGACGCAACAGGGCTTTTTGTGAAGTCTTTTGAAAGGCGAGCTT
CGGGGGGCTGCAGTCGGAAAAAGACGCTCTCGGCAAAGGAGCGATACTGC
TGGGGGGAAGAGGCGGCGCAACGGGAAATATGCCCGAGCGCCACAACGCG
CGGCGGCAGCTATACAGGGAGGCATGCTCAGAGGGACCTTTTCTTTTGGG
ATTGGGAGAGCAATTATCGCCGCGCGGCGGCTCCGGCATATAGCGACAAC
GGCTCGACTATGGCGACCCAATGGAGATACCAGCACCATAGGCGTTATGC
CGCGCTCCGGCATTGTCGTCGGGATCGTACAGCGTCAGACGAAATCCATC
AGGAGGCGCAAGGATACTGAGGTACCGATGCCGCCACCGGTGCCGCCGAA
ATGCATAGCCCGCGGGCATCGAAGTGGGTATAGAAACGGGCGTAGGAAAA
AACGGTGGCCTCGGCTCCAATACCCATCAGAGGTTCGCCTGCCAATGCCG
CGTGCAAGCACATGCCAAACTCGTTATACGTTTACACAGCCTTACTGAAG
CACACGTGATCCCCC back to topCoding sequence (CDS) from alignment at P-wetherbeei_contig699:862..3276+ >mRNA_P-wetherbeei_contig699.2.1 ID=mRNA_P-wetherbeei_contig699.2.1|Name=mRNA_P-wetherbeei_contig699.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=1005bp|location=Sequence derived from alignment at P-wetherbeei_contig699:862..3276+ (Phaeothamnion wetherbeei SAG_119_79)
ATGCAGGAGCAGCTGCAGCAGTCGCGGGCAGCGTACGACGCCCGCTGCCA
GCAATTCGCGCACTCCGTTTCGGACGAGTGCGAGCAGGAGGTCACCAAGA
GCGTCCAGGCACTACGGGAAGAGTGGGCGAAGACGCAGAAGGACATCGTT
ACCGTGATTCAAGAGGGCTGGAAAGAGAACCGCGAGACCATGGTGCTGAT
GCGCGCGCTGCACGAGGAGATGACGGAGCAGCAGCGCCATCACCTCGAGG
CCTTCCGCGCCGACATCTACGCCGCCGCGTGCGAGGAATGCGAGGGACGG
GCTGCGATGGCGGCGGCCGCCGCAGCGGACGAGCACGAAGAGGACAAGGC
GGGGGCTCTGCTACTCGCGGAGGTGCGCCACGAGGAGGAGACACGCCAGC
TGCGAGAGACAGTCGAGGCGCTACGTCGCCAGCTCGCCGAGAACGGTGGC
GGCGGCGGTGGCGGTGGCGGCGCTGCCGCTGCTGCCGGTGCTGCCGGCGC
TGCAGCCGCCGCCGTCGGCGGCGGCAGAAACAACAACGGTTCGGGCGTCG
GCACCAGCGGTGGTTGCGGCGCAAGTGCCACCGGTGGTAGTGCTCGTGGA
AGCCGCGGCCGCCGCGGCGGTGATGGTGGCACCGGCGGAGGTACTGCCAG
CGCCAGTGCCGGTGGCGGCGGCGACGGCAGCAGTGGCGGCGGAGCGAATC
GTGGCTCTGGAGCTGCGGCGGCGGAGGTAAACAATGGCTCTCCTGCCGCA
CAACGTGTTGCTCCTCGCCGGACCGTCGGCAGCCCGGTACTGCAGCGCCG
CGTGCTCCACTTGCCGCGCCGCAGGGAACAGGCTGCGGAAGCGCCGCAGG
CGGGGCCGGCGCAAGTGGCGGCAGTGGCAGCCGAGTCGCCGGTGGCGCAG
CGGCAGCGGCCGCGGAACACCAACGGCGTCGTGACCCCCGAGCAGGCCCC
GGCTCCTTCGGCATCCAGCGGCCAGAACGGCCGCGGCCGCGGCGCGGCTC
GCTGA back to top
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