mRNA_P-wetherbeei_contig6936.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig6936.1.1
Unique NamemRNA_P-wetherbeei_contig6936.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig6936.1.1 vs. uniprot
Match: A0A6H5K8I7_9PHAE (PFK domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5K8I7_9PHAE)

HSP 1 Score: 62.8 bits (151), Expect = 2.390e-9
Identity = 31/43 (72.09%), Postives = 35/43 (81.40%), Query Frame = 1 
Query:    1 VEFLQHQPGSVLGSSRGGFELDKIMAFLEQNKVIPGEKHICGG 129
            VEFLQHQPGSVLGSSRGGF+LDKI+ FL  NKV   + +I GG
Sbjct:  137 VEFLQHQPGSVLGSSRGGFDLDKIIKFLVDNKV--NQLYIIGG 177
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BLAST of mRNA_P-wetherbeei_contig6936.1.1 vs. uniprot
Match: D7G165_ECTSI (Pyrophosphate-dependent phosphofructose kinase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G165_ECTSI)

HSP 1 Score: 50.8 bits (120), Expect = 3.850e-5
Identity = 22/43 (51.16%), Postives = 33/43 (76.74%), Query Frame = 1 
Query:    1 VEFLQHQPGSVLGSSRGGFELDKIMAFLEQNKVIPGEKHICGG 129
            VE +QH+ GS+LGS+RGGF+LDKI+ F+  N++   + +I GG
Sbjct:  320 VELVQHEGGSILGSARGGFDLDKIIDFINDNQI--NQLYIIGG 360
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BLAST of mRNA_P-wetherbeei_contig6936.1.1 vs. uniprot
Match: A0A6H5KDC4_9PHAE (PFK domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KDC4_9PHAE)

HSP 1 Score: 50.8 bits (120), Expect = 3.910e-5
Identity = 22/43 (51.16%), Postives = 33/43 (76.74%), Query Frame = 1 
Query:    1 VEFLQHQPGSVLGSSRGGFELDKIMAFLEQNKVIPGEKHICGG 129
            VE +QH+ GS+LGS+RGGF+LDKI+ F+ + K+   + +I GG
Sbjct:  357 VELIQHEGGSILGSARGGFDLDKIIDFINKKKI--NQLYIIGG 397
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BLAST of mRNA_P-wetherbeei_contig6936.1.1 vs. uniprot
Match: H6WB78_VAULI (Pyrophosphate-dependant phosphofructokinase n=1 Tax=Vaucheria litorea TaxID=109269 RepID=H6WB78_VAULI)

HSP 1 Score: 50.4 bits (119), Expect = 5.220e-5
Identity = 23/43 (53.49%), Postives = 34/43 (79.07%), Query Frame = 1 
Query:    1 VEFLQHQPGSVLGSSRGGFELDKIMAFLEQNKVIPGEKHICGG 129
            V  LQHQ G++LG+SRGGF+LDKI+ FL++N+V   + ++ GG
Sbjct:  194 VNRLQHQGGTLLGTSRGGFDLDKIIKFLKENEV--NQLYVIGG 234
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BLAST of mRNA_P-wetherbeei_contig6936.1.1 vs. uniprot
Match: A0A7S4D703_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4D703_HETAK)

HSP 1 Score: 49.7 bits (117), Expect = 9.630e-5
Identity = 27/61 (44.26%), Postives = 39/61 (63.93%), Query Frame = 1 
Query:    1 VEFLQHQPGSVLGSSRGGFELDKIMAFLEQNKVIPGEKHICGG---RQPLADIFLEALASG 174
            V  + HQ G++LGSSRGGF+L+KIM FLE+N V   + ++ GG    +    + +E LA G
Sbjct:  141 VAGIHHQGGTLLGSSRGGFDLEKIMGFLERNGV--NQLYVIGGDGTHRGAHRVAMECLARG 199
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig6936.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A6H5K8I7_9PHAE2.390e-972.09PFK domain-containing protein n=2 Tax=Ectocarpus T... [more]
D7G165_ECTSI3.850e-551.16Pyrophosphate-dependent phosphofructose kinase n=1... [more]
A0A6H5KDC4_9PHAE3.910e-551.16PFK domain-containing protein n=1 Tax=Ectocarpus s... [more]
H6WB78_VAULI5.220e-553.49Pyrophosphate-dependant phosphofructokinase n=1 Ta... [more]
A0A7S4D703_HETAK9.630e-544.26Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig6936contigP-wetherbeei_contig6936:2583..2883 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D7FRM0
Preferred namepfk
PFAMsPFK
Model size301
Max annot lvl2759|Eukaryota
KEGG rclassRC00002,RC00017
KEGG koko:K00850,ko:K01412
KEGG ReactionR00756,R03236,R03237,R03238,R03239,R04779
KEGG Pathwayko00010,ko00030,ko00051,ko00052,ko00680,ko01100,ko01110,ko01120,ko01130,ko01200,ko01230,ko03018,ko04152,ko05230,map00010,map00030,map00051,map00052,map00680,map01100,map01110,map01120,map01130,map01200,map01230,map03018,map04152,map05230
KEGG ModuleM00001,M00345
Hectar predicted targeting categoryother localisation
GOsGO:0000166,GO:0003674,GO:0003824,GO:0003872,GO:0005488,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005777,GO:0005829,GO:0005886,GO:0005975,GO:0006082,GO:0006090,GO:0006091,GO:0006096,GO:0006139,GO:0006163,GO:0006164,GO:0006165,GO:0006725,GO:0006732,GO:0006733,GO:0006753,GO:0006754,GO:0006757,GO:0006793,GO:0006796,GO:0006807,GO:0007275,GO:0008144,GO:0008150,GO:0008152,GO:0008443,GO:0009056,GO:0009058,GO:0009108,GO:0009117,GO:0009123,GO:0009124,GO:0009126,GO:0009127,GO:0009132,GO:0009135,GO:0009141,GO:0009142,GO:0009144,GO:0009145,GO:0009150,GO:0009152,GO:0009156,GO:0009161,GO:0009165,GO:0009166,GO:0009167,GO:0009168,GO:0009179,GO:0009185,GO:0009199,GO:0009201,GO:0009205,GO:0009206,GO:0009259,GO:0009260,GO:0009507,GO:0009536,GO:0009653,GO:0009888,GO:0009987,GO:0010015,GO:0010053,GO:0016020,GO:0016052,GO:0016053,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016773,GO:0017076,GO:0017144,GO:0018130,GO:0019200,GO:0019359,GO:0019362,GO:0019363,GO:0019438,GO:0019439,GO:0019637,GO:0019693,GO:0019752,GO:0020015,GO:0022622,GO:0030154,GO:0030554,GO:0032501,GO:0032502,GO:0032553,GO:0032555,GO:0032559,GO:0032787,GO:0034404,GO:0034641,GO:0034654,GO:0034655,GO:0035639,GO:0036094,GO:0042579,GO:0042866,GO:0043167,GO:0043168,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043436,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044262,GO:0044270,GO:0044271,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046031,GO:0046034,GO:0046390,GO:0046394,GO:0046434,GO:0046483,GO:0046496,GO:0046700,GO:0046835,GO:0046939,GO:0048364,GO:0048731,GO:0048856,GO:0048869,GO:0051186,GO:0051188,GO:0055086,GO:0061615,GO:0071704,GO:0071944,GO:0072330,GO:0072521,GO:0072522,GO:0072524,GO:0072525,GO:0090407,GO:0090558,GO:0090627,GO:0097159,GO:0097367,GO:0099402,GO:1901135,GO:1901137,GO:1901265,GO:1901292,GO:1901293,GO:1901360,GO:1901361,GO:1901362,GO:1901363,GO:1901564,GO:1901566,GO:1901575,GO:1901576,GO:1905392
Exons1
Evalue3.98e-10
EggNOG OGsCOG0205@1|root,KOG2440@2759|Eukaryota
EC2.7.1.11,3.4.24.64
Description6-phosphofructokinase activity
Cds size300
COG categoryG
BRITEko00000,ko00001,ko00002,ko01000,ko01002,ko01009,ko03019,ko03029
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186946.9735625-CDS-P-wetherbeei_contig6936:2582..28821683186946.9735625-CDS-P-wetherbeei_contig6936:2582..2882Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig6936 2583..2882 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig6936.1.1prot_P-wetherbeei_contig6936.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig6936 2583..2882 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig6936.1.1

>prot_P-wetherbeei_contig6936.1.1 ID=prot_P-wetherbeei_contig6936.1.1|Name=mRNA_P-wetherbeei_contig6936.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=100bp
VEFLQHQPGSVLGSSRGGFELDKIMAFLEQNKVIPGEKHICGGRQPLADI
FLEALASGRLLLQMRFLFLLLQATRWRKIRVVGLVCKHGRLVGSAVRRTE
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mRNA from alignment at P-wetherbeei_contig6936:2583..2883+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig6936.1.1 ID=mRNA_P-wetherbeei_contig6936.1.1|Name=mRNA_P-wetherbeei_contig6936.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=301bp|location=Sequence derived from alignment at P-wetherbeei_contig6936:2583..2883+ (Phaeothamnion wetherbeei SAG_119_79)
GTGGAGTTCCTGCAGCACCAGCCGGGTTCGGTGCTGGGATCATCGCGTGG
CGGCTTTGAGCTCGACAAGATTATGGCCTTCCTCGAGCAAAATAAGGTAA
TTCCTGGGGAAAAACATATATGCGGAGGCCGCCAGCCGCTTGCTGACATT
TTCCTGGAAGCTTTGGCGAGCGGCCGGCTGCTTCTGCAGATGCGTTTTCT
TTTTTTGCTTTTGCAGGCGACGCGATGGAGGAAGATCAGGGTTGTGGGGC
TCGTCTGCAAACATGGTCGGCTAGTTGGTTCTGCGGTTCGACGGACTGAA
C
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Coding sequence (CDS) from alignment at P-wetherbeei_contig6936:2583..2883+

>mRNA_P-wetherbeei_contig6936.1.1 ID=mRNA_P-wetherbeei_contig6936.1.1|Name=mRNA_P-wetherbeei_contig6936.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=300bp|location=Sequence derived from alignment at P-wetherbeei_contig6936:2583..2883+ (Phaeothamnion wetherbeei SAG_119_79)
GTGGAGTTCCTGCAGCACCAGCCGGGTTCGGTGCTGGGATCATCGCGTGG
CGGCTTTGAGCTCGACAAGATTATGGCCTTCCTCGAGCAAAATAAGGTAA
TTCCTGGGGAAAAACATATATGCGGAGGCCGCCAGCCGCTTGCTGACATT
TTCCTGGAAGCTTTGGCGAGCGGCCGGCTGCTTCTGCAGATGCGTTTTCT
TTTTTTGCTTTTGCAGGCGACGCGATGGAGGAAGATCAGGGTTGTGGGGC
TCGTCTGCAAACATGGTCGGCTAGTTGGTTCTGCGGTTCGACGGACTGAA
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