mRNA_P-wetherbeei_contig692.4.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig692.4.1
Unique NamemRNA_P-wetherbeei_contig692.4.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig692.4.1 vs. uniprot
Match: D7G5C3_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G5C3_ECTSI)

HSP 1 Score: 214 bits (545), Expect = 1.740e-59
Identity = 123/269 (45.72%), Postives = 171/269 (63.57%), Query Frame = 2
Query:  386 QIALRKIPERISRKPRRIDVPHPLRPEGQSEMCLFVKEGSKDSVKKMLEATPVEGLSKVITLEKLRTAYKTFAARRELMAQYDLFLCDDRILPMMTKALGKTFLAARKQPVAVRITRKTSLPLAVARARDATFLIPSYGVCWGLKVATIDMPAEHVVDNVVAAVARAADKMIPGGWKNIQGLHLQATGSVALPIYSAVLETIAPEPPSPPG-----AAEEDAAKXXXXXXXXXXXXXXXAKRRIKSPLLKAQLRKL---AHGEKAAAAA 1168
            QI+L KIP  +  KP  I +PHPLR     +MCL VK+ +K  +K+M E  PVEGL+K+I L+KLRT YK F  RREL++Q+DLFL DDRILPM+TKALGKTFL  +KQPV +++ R+ S    +ARARD+ FL+ S+G CW +K+A   M  + VV+N++  VA   +K IP  WKN++ ++++ + SVALP+YS + +     PP+P       A +E+AA                AK+R   PL++ QL KL   A  EKAA+ A
Sbjct:   41 QISLHKIPGDVKAKPVPIAIPHPLRKREDCDMCLIVKDNAKVWIKEMAEKEPVEGLTKIIKLDKLRTQYKDFKDRRELLSQFDLFLADDRILPMLTKALGKTFLKVKKQPVPIKLERRASFAKQIARARDSAFLVGSHGDCWAVKLANTSMTEDQVVENLMTGVAAVVEK-IPRKWKNVKAINIKCSHSVALPVYSNIGDL----PPAPSAKKATVAGKEEAA---GEGEGKEPNSHSQAKKRKPRPLIRQQLNKLKEEAKAEKAASTA 301          
BLAST of mRNA_P-wetherbeei_contig692.4.1 vs. uniprot
Match: A0A7S2CVK6_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2CVK6_9STRA)

HSP 1 Score: 187 bits (475), Expect = 1.260e-49
Identity = 98/198 (49.49%), Postives = 136/198 (68.69%), Query Frame = 2
Query:  383 IQIALRKIPERISRKPRRIDVPHPLRPEGQSEMCLFVKEGSKDSVKKML-EATPVEGLSKVITLEKLRTAYKTFAARRELMAQYDLFLCDDRILPMMTKALGKTFLAARKQPVAVRITRKTSLPLAVARARDATFLIPSYGVCWGLKVATIDMPAEHVVDNVVAAVARAADKMIPGGWKNIQGLHLQATGSVALPIYS 973
            IQI L++IP   S KP ++ VPHP+  +   +MCLF+K+  K  VK +L E  PVEGL+K+ITL+KLRT+Y  F+ RREL+A YDLFL D+RILPM+ KALGKTF + +KQP+ + +TR  SLP  V RARD+T LI   G C  + V   +M  + +V N+VAA + A +  IP  WKNIQ + ++   S++LPI++
Sbjct:   94 IQITLQRIPGNSSPKPIQLSVPHPIHGDSDCQMCLFIKKEDKPLVKSLLMEDNPVEGLAKIITLDKLRTSYARFSQRRELLASYDLFLADERILPMLCKALGKTFFSRKKQPIPLCVTRHESLPHRVRRARDSTSLIIPSGTCVAVIVGNTNMTPKELVANIVAAASSAIEH-IPRKWKNIQAIQVKTADSMSLPIFN 290          
BLAST of mRNA_P-wetherbeei_contig692.4.1 vs. uniprot
Match: A0A7S2SVD8_9STRA (Hypothetical protein (Fragment) n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SVD8_9STRA)

HSP 1 Score: 166 bits (420), Expect = 1.780e-42
Identity = 92/198 (46.46%), Postives = 131/198 (66.16%), Query Frame = 2
Query:  383 IQIALRKIPERISRKPRRIDVPHPLRPEGQSEMCLFVKEGSKDSVKKML-EATPVEGLSKVITLEKLRTAYKTFAARRELMAQYDLFLCDDRILPMMTKALGKTFLAARKQPVAVRITRKTSLPLAVARARDATFLIPSYGVCWGLKVATIDMPAEHVVDNVVAAVARAADKMIPGGWKNIQGLHLQATGSVALPIYS 973
            + I L+K+P + S KP R+ + HPL      +MCLF+K   K  VK++L E+ PV GL KVITL+KLRT+Y  F  RREL++ YDLFL DDRILPM+ K LGKTF + +KQPV VRI R+ +LP  + RARD+T+L+   G    + +    M  + +V+N++AA   A D  IP  W N+Q +++++  SVALP+ +
Sbjct:   29 VTIVLKKVPSKASPKPIRLPLAHPLW-SLDCDMCLFMKTEDKPWVKELLMESKPVPGLKKVITLDKLRTSYARFERRRELISTYDLFLADDRILPMLCKTLGKTFFSRKKQPVPVRI-RRGALPQTIQRARDSTYLVLGGGNNVSVCIGNTSMTRKQLVENLLAATNEAVDH-IPRKWANVQAIYIKSDSSVALPVLN 223          
BLAST of mRNA_P-wetherbeei_contig692.4.1 vs. uniprot
Match: F0WX21_9STRA (Uncharacterized protein AlNc14C340G10778 n=1 Tax=Albugo laibachii Nc14 TaxID=890382 RepID=F0WX21_9STRA)

HSP 1 Score: 159 bits (401), Expect = 5.820e-40
Identity = 86/194 (44.33%), Postives = 120/194 (61.86%), Query Frame = 2
Query:  389 IALRKIPERISRKPRRIDVPHPLRPEGQSEMCLFVKEGSKDSVKKMLEATPVEGLSKVITLEKLRTAYKTFAARRELMAQYDLFLCDDRILPMMTKALGKTFLAARKQPVAVRITRKTSLPLAVARARDATFLIPSYGVCWGLKVATIDMPAEHVVDNVVAAVARAADKMIPGGWKNIQGLHLQATGSVALPIY 970
            I  +K+P + S KP  I++PH +R   QSEMCL VK+  KD VKK+L+  PVEGL+KV+TL+KLR  +  F  RR L+  YDLFL DDRILP +   +GK F+  +KQPV VRI+R       +      TF+  S G C  +++A + M  + +V+N++  + R A  +I   W  IQ +HL+   SVALPIY
Sbjct:   48 IQRKKVPSKASLKPIPIELPHGIRK--QSEMCLLVKDTDKDRVKKILKEDPVEGLTKVMTLKKLRKNFARFEDRRTLVGAYDLFLADDRILPYLKSPVGKVFIRVKKQPVPVRISR-AKFTQNLRAVEKQTFMFVSCGACMNVRIAHLGMSVDEIVENIMIGMQRCAS-LIGKKWNGIQAIHLKTNESVALPIY 237          
BLAST of mRNA_P-wetherbeei_contig692.4.1 vs. uniprot
Match: A0A7S3Q1A4_9STRA (Hypothetical protein n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3Q1A4_9STRA)

HSP 1 Score: 165 bits (417), Expect = 6.600e-40
Identity = 87/219 (39.73%), Postives = 131/219 (59.82%), Query Frame = 2
Query:  383 IQIALRKIPERISRKPRRIDVPHPLRPEG------------QSEMCLFVKEGSKDSVKKMLEATP--VEGLSKVITLEKLRTAYKTFAARRELMAQYDLFLCDDRILPMMTKALGKTFLAARKQPVAVRITRKTSLPLAVARARDATFLIPSYGVCWGLKVATIDMPAEHVVDNVVAAVARAADKM--IPGGWKNIQGLHLQATGSVALPIYSAVLETI 991
            +   L +IP++ S KP R+++PHPL   G            + E+C+ VK+ SK+ V++M+E  P  +  + KV+TL  LR  Y  +  RR+L+ +Y+ F+ DDRILPM+ KALGK F   +KQP+ ++ITRK +LP AV +   +TFL  S G C  +K  T  MP EH+V NV A  A+    +  IP  W NI  ++++ + SVALP+Y+   E +
Sbjct:   54 VHFTLERIPQQTSSKPHRVEIPHPLHKLGGDDAMDVDDGLDEVEVCIIVKDDSKEYVQEMIENFPTYLSHIKKVLTLTSLRKKYTQYKDRRDLLKRYNFFMADDRILPMVGKALGKNFFQEKKQPIPIKITRKEALPYAVKKCLSSTFLWVSPGSCLSVKAGTTGMPMEHLVKNVAAICAKEGGAVGHIPRRWSNITAINIKTSQSVALPVYNKTREEL 272          
BLAST of mRNA_P-wetherbeei_contig692.4.1 vs. uniprot
Match: A0A7S1UKI9_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1UKI9_9STRA)

HSP 1 Score: 157 bits (398), Expect = 1.850e-39
Identity = 92/230 (40.00%), Postives = 137/230 (59.57%), Query Frame = 2
Query:  365 DPLVT*IQIALRKIPERISRKPRRIDVPHPLRP--EGQSEMCLFVKEGSKDSVKKMLEATPVEGLSKVITLEKLRTAYKTFAARRELMAQYDLFLCDDRILPMMTKALGKTFLAARKQPVAVRITRK-TSLPLAVARARDATFLIPSYGVCWGLKVATIDMPAEHVVDNVVAAVARAADKMIPGGWKNIQGLHLQATGSVALPIYSA--VLETIAPEPPSPPGAAEEDAA 1039
            +P    +Q AL+ +P   S+KP R+ VPHP     EG   +CL  K+ S +++K++  A P   + KV+ L  LRT YK +  RRELMA+++LF+ DDRILPM+ KALGK F  A+K P+ ++I +K   +   VA ARD+T+L    G C  L+V    M A+ + +N+ A V  A  + IP  W+NI  +HL+   SVALP+Y++   L+ IA +     G  +E+ A
Sbjct:   38 EPETVLLQFALKTVPAIASQKPIRLAVPHPFLGFGEGPPRICLICKQESVNAMKELFRAHPDLHVDKVVGLSALRTEYKRYEKRRELMAEFNLFVADDRILPMLAKALGKIFFKAKKHPLPIKINQKGAKVARDVAAARDSTYLHLVQGPCLALRVGHTGMEADAITENIRAVVPAAVSR-IPKKWRNILSIHLKTATSVALPVYASDRTLKAIARQTGDEEGGMDEEEA 266          
BLAST of mRNA_P-wetherbeei_contig692.4.1 vs. uniprot
Match: A0A024G4U6_9STRA (Uncharacterized protein n=1 Tax=Albugo candida TaxID=65357 RepID=A0A024G4U6_9STRA)

HSP 1 Score: 156 bits (395), Expect = 2.640e-39
Identity = 85/194 (43.81%), Postives = 119/194 (61.34%), Query Frame = 2
Query:  389 IALRKIPERISRKPRRIDVPHPLRPEGQSEMCLFVKEGSKDSVKKMLEATPVEGLSKVITLEKLRTAYKTFAARRELMAQYDLFLCDDRILPMMTKALGKTFLAARKQPVAVRITRKTSLPLAVARARDATFLIPSYGVCWGLKVATIDMPAEHVVDNVVAAVARAADKMIPGGWKNIQGLHLQATGSVALPIY 970
            I  +KIP + S KP  I++PH +R   Q EMCL VK+  K+ VKK+L+  PVEGL+KV+TL+KLR  +  F  RR L+  YDLFL DDRILP +   +GK F+  +KQPV VRI+R  +    +      TF+  S G C  +++A   M  + +V+N++  + R A  +I   W  IQ +HL+   SVALPIY
Sbjct:   48 IQRKKIPSKASLKPIPIELPHAIRK--QPEMCLLVKDTDKERVKKILKEDPVEGLTKVMTLKKLRKNFTRFEDRRTLVGAYDLFLADDRILPYLKSPVGKVFIRVKKQPVPVRISR-ANFTQNLRAVEKQTFMFVSCGACMNIRIAHFGMSVDQIVENIMVGMQRCAS-LIGKKWNGIQAIHLKTNESVALPIY 237          
BLAST of mRNA_P-wetherbeei_contig692.4.1 vs. uniprot
Match: A0A6A4D992_9STRA (Uncharacterized protein n=4 Tax=Phytophthora TaxID=4783 RepID=A0A6A4D992_9STRA)

HSP 1 Score: 159 bits (401), Expect = 5.750e-39
Identity = 87/201 (43.28%), Postives = 130/201 (64.68%), Query Frame = 2
Query:  404 IPERISRKPRRIDVPHPLRPEGQSEMCLFVKEGSKDSVKKMLEATPVEGLSKVITLEKLRTAYKTFAARRELMAQYDLFLCDDRILPMMTKALGKTFLAARKQPVAVRITRKTSLPLAVARARDATFLIPSYGVCWGLKVATIDMPAEHVVDNVVAAVARAADKMIPGGWKNIQGLHLQATGSVALPIYSAVLETIAPEPP 1006
            +P + S KP  +++PHPL  E  +E+CLFVK+  K  +K+ L   PV G++KV+T++KLR  +  F  +R L A YD+FL DDR+LP +   LG  F A +KQPVAVR++RK S+  ++  A   T    S GVC  +KVA +DM  E +VDN++ A+   A+ ++P GW  +Q + ++ + SVALP+Y+A L T+A  PP
Sbjct:   58 VPGKTSLKPIPVNLPHPLHDEN-AEICLFVKDEDKKRIKEALAKDPVAGITKVMTVKKLRKNFSRFEDKRALAAAYDMFLADDRVLPYLKGHLGTKFFAKKKQPVAVRVSRK-SVAASLRLASRRTAFHVSAGVCNNVKVARLDMTPEQIVDNIMVAMNSCAN-LVPKGWNGVQSIGIKTSDSVALPVYNA-LATLAKLPP 254          
BLAST of mRNA_P-wetherbeei_contig692.4.1 vs. uniprot
Match: D0N113_PHYIT (Uncharacterized protein n=2 Tax=Phytophthora infestans TaxID=4787 RepID=D0N113_PHYIT)

HSP 1 Score: 157 bits (396), Expect = 1.170e-38
Identity = 88/201 (43.78%), Postives = 124/201 (61.69%), Query Frame = 2
Query:  404 IPERISRKPRRIDVPHPLRPEGQSEMCLFVKEGSKDSVKKMLEATPVEGLSKVITLEKLRTAYKTFAARRELMAQYDLFLCDDRILPMMTKALGKTFLAARKQPVAVRITRKTSLPLAVARARDATFLIPSYGVCWGLKVATIDMPAEHVVDNVVAAVARAADKMIPGGWKNIQGLHLQATGSVALPIYSAVLETIAPEPP 1006
            +P + S KP  I +PH L  E  +E+CLFVK+  K  +K+ L   PV+GL+KV+T++KLR  +  F  +R L A YD+FL DDR+LP +   LG  F   +KQPV+VR++RK         AR   F + S GVC  +KVA +DM  E +VDNV+ A+   A  ++P GW  +Q + L+   SVALP+Y+A L T+A  PP
Sbjct:   58 VPAKASLKPIPITLPHALYDES-AEICLFVKDEDKKRIKEALAKDPVQGLTKVLTVKKLRKNFSRFEDKRALAAAYDMFLADDRVLPYLKGPLGNKFFVKKKQPVSVRVSRKDVANSVRLAARRTAFHV-SAGVCCNVKVARLDMTPEQIVDNVMVAMNNCAS-LVPKGWNGVQSISLKLADSVALPVYNA-LATLAKLPP 254          
BLAST of mRNA_P-wetherbeei_contig692.4.1 vs. uniprot
Match: A0A225WZF5_9STRA (Uncharacterized protein n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225WZF5_9STRA)

HSP 1 Score: 156 bits (394), Expect = 2.870e-38
Identity = 83/201 (41.29%), Postives = 130/201 (64.68%), Query Frame = 2
Query:  404 IPERISRKPRRIDVPHPLRPEGQSEMCLFVKEGSKDSVKKMLEATPVEGLSKVITLEKLRTAYKTFAARRELMAQYDLFLCDDRILPMMTKALGKTFLAARKQPVAVRITRKTSLPLAVARARDATFLIPSYGVCWGLKVATIDMPAEHVVDNVVAAVARAADKMIPGGWKNIQGLHLQATGSVALPIYSAVLETIAPEPP 1006
            +P + S KP  I +PH L  E  +E+CLFVK+  K  +K++L  +PV+G++KV+T++KLR  +  F  +R L A YD+FL DDR+LP +  ALG  F   +KQP+AVR++RK +       AR   F + S GVC  +KVA +DM  E +V+N++ A+   A  ++P GW  +Q ++++ + SV+LP+Y+A L ++A  PP
Sbjct:   58 VPAKASLKPIPITLPHALYDES-AEICLFVKDDDKKRIKELLVKSPVQGVTKVMTVKKLRKNFSRFEDKRALAAAYDMFLADDRVLPYLKGALGTKFFIKKKQPIAVRVSRKDAANAVRLAARRTAFHV-SAGVCNNVKVARLDMTPEQIVENIMVAMNNCAS-LVPKGWNGVQSINIKTSDSVSLPVYNA-LASLAKLPP 254          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig692.4.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G5C3_ECTSI1.740e-5945.72Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A7S2CVK6_9STRA1.260e-4949.49Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A7S2SVD8_9STRA1.780e-4246.46Hypothetical protein (Fragment) n=1 Tax=Rhizochrom... [more]
F0WX21_9STRA5.820e-4044.33Uncharacterized protein AlNc14C340G10778 n=1 Tax=A... [more]
A0A7S3Q1A4_9STRA6.600e-4039.73Hypothetical protein n=1 Tax=Chaetoceros debilis T... [more]
A0A7S1UKI9_9STRA1.850e-3940.00Hypothetical protein n=1 Tax=Phaeomonas parva TaxI... [more]
A0A024G4U6_9STRA2.640e-3943.81Uncharacterized protein n=1 Tax=Albugo candida Tax... [more]
A0A6A4D992_9STRA5.750e-3943.28Uncharacterized protein n=4 Tax=Phytophthora TaxID... [more]
D0N113_PHYIT1.170e-3843.78Uncharacterized protein n=2 Tax=Phytophthora infes... [more]
A0A225WZF5_9STRA2.870e-3841.29Uncharacterized protein n=1 Tax=Phytophthora megak... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig692contigP-wetherbeei_contig692:4509..7696 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D7G5C3
Preferred nameRSL1D1
PFAMsRibosomal_L1
Model size2150
Max annot lvl2759|Eukaryota
KEGG koko:K11824,ko:K14775
KEGG Pathwayko04144,ko04721,ko04961,ko05016,map04144,map04721,map04961,map05016
Hectar predicted targeting categoryother localisation
GOsGO:0000470,GO:0003674,GO:0003676,GO:0003723,GO:0003729,GO:0003730,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005730,GO:0005737,GO:0005829,GO:0005840,GO:0006139,GO:0006364,GO:0006396,GO:0006412,GO:0006518,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0010941,GO:0015934,GO:0016070,GO:0016072,GO:0019538,GO:0022613,GO:0022625,GO:0022626,GO:0030684,GO:0030686,GO:0031974,GO:0031981,GO:0032879,GO:0032880,GO:0032991,GO:0034470,GO:0034641,GO:0034645,GO:0034660,GO:0042254,GO:0042273,GO:0042981,GO:0043043,GO:0043067,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043603,GO:0043604,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0046483,GO:0048027,GO:0048583,GO:0050789,GO:0050793,GO:0050794,GO:0065007,GO:0070013,GO:0071704,GO:0071840,GO:0080134,GO:0080135,GO:0090304,GO:0090342,GO:0097159,GO:1901360,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1990904,GO:2000772
Exons4
Evalue2.33e-52
EggNOG OGsKOG1685@1|root,KOG1685@2759|Eukaryota
Ec32 ortholog descriptionRibosomal protein L1-like
Ec32 orthologEc-14_006980.1
Descriptionregulation of cellular senescence
Cds size1641
COG categoryS
BRITEko00000,ko00001,ko03009,ko04131,ko04147
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig692.4.1prot_P-wetherbeei_contig692.4.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig692 4987..7665 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186945.931745-UTR-P-wetherbeei_contig692:4508..49861683186945.931745-UTR-P-wetherbeei_contig692:4508..4986Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig692 4509..4986 +
1683186945.9956338-UTR-P-wetherbeei_contig692:7665..76961683186945.9956338-UTR-P-wetherbeei_contig692:7665..7696Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig692 7666..7696 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186945.9438567-CDS-P-wetherbeei_contig692:4986..50671683186945.9438567-CDS-P-wetherbeei_contig692:4986..5067Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig692 4987..5067 +
1683186945.9542246-CDS-P-wetherbeei_contig692:5775..60361683186945.9542246-CDS-P-wetherbeei_contig692:5775..6036Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig692 5776..6036 +
1683186945.973138-CDS-P-wetherbeei_contig692:6324..66901683186945.973138-CDS-P-wetherbeei_contig692:6324..6690Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig692 6325..6690 +
1683186945.9856822-CDS-P-wetherbeei_contig692:6732..76651683186945.9856822-CDS-P-wetherbeei_contig692:6732..7665Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig692 6733..7665 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig692.4.1

>prot_P-wetherbeei_contig692.4.1 ID=prot_P-wetherbeei_contig692.4.1|Name=mRNA_P-wetherbeei_contig692.4.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=547bp
MCLFVKEGSKDSVKKMLEATPVEGLSKVITLEKLRTAYKTFAARRELMAQ
YDLFLCDDRILPMMTKALGKTFLAARKQPVAVRITRKTSLPLAVARARDA
TFLIPSYGVCWGLKVATIDMPAEHVVDNVVAAVARAADKMIPGGWKNIQG
LHLQATGSVALPIYSAVLETIAPEPPSPPGAAEEDAAKAEAAAARAKARA
EKAAKRRIKSPLLKAQLRKLAHGEKAAAAAAEVGELGGAAKAAKENSDPK
GASAPSTAAGEGGGTTTPSSKKPKKQTPKAAAGSMVVAAAPTEAKAAPAK
LPESKKRPAADVAAAANGVDAAASAPKKAKAKSAEEAAGSSTATAAAPPP
SGKKSDRKRPSPSEDTLQPGTATVATPAAKKSKRVATPAVTAVAAANGEK
AKEAAAAAVVVTSAAKGTARKAKTAKPATPAPATKTVIPAATPAAPSAAT
PAAAMSMAAPANPSGTATPAVKAVNSKAAASGAKSRKAMAAAAPASDKAG
ASGAAAAAAAPKKALEAAAAPRKSAKKAVAATPKSAAGKRKTRSEA*
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mRNA from alignment at P-wetherbeei_contig692:4509..7696+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig692.4.1 ID=mRNA_P-wetherbeei_contig692.4.1|Name=mRNA_P-wetherbeei_contig692.4.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=3188bp|location=Sequence derived from alignment at P-wetherbeei_contig692:4509..7696+ (Phaeothamnion wetherbeei SAG_119_79)
GGCTGCACTCCTGTCGCACTTAAAAAAGGAGGAGGCGGCACGGCCTACGC GAAATCTCTTAGATGGAGGAGGTGGCGATCCGATTCAGGTCTGTGGTGTG GCGATCTACGAGGATTCCAGCGCCAGGTTGTCAAGTCTGGTGTGGTCGTT GGGTTCTCCGTTTGTCATAGCATGACTGTACCGCTGTTCTCCTACGCTGT GGTGTTTTTGTCAGCTGCGGCTTTTGAAAGCCATCCATTCGCTTCTACGC CACACACAGAACCTTTGATTGATCGAGCCACGCTGCACTATCTTCGTCCT TCTGAACATTGGCATAACTGTTCGCGACGGCCCTGTTTTCCTTTCGCTAC GCCGCGTTCCTTGCGATCCATTGGTTACGTAGATCCAAATCGCCCTCCGA AAAATCCCGGAACGCATTTCCCGCAAGCCGCGACGCATCGATGTGCCGCA CCCACTCCGGCCGGAGGGCCAGAGCGAAATGTGTTTGTTCGTCAAGGAGG GTAGCAAGGATTCGGTGAAGAAGATGCTGGAGGCGACTCCCGTCGAGGGC CTGTCCAAGGTGTGTATTTCGCCCTTCTTCGTTTCCTGTCTGTAAACGCG GTGTTTTTGAAAGGGCGCTTTGCCGTTTCTGTCCGAAGCATGGGTCATTT GTTCCAGAGGGTCTTGTCACCGCAACAAGACAAGATGTCTTCTCTGTGGT ATTTTTAATTTTGCAAGCTCTTCTAGGGCAGGACGTTGGCGTTGCAGAAG GGTGCCATTGGCTATACGTTATACTGCCCGCGTTTTCAGTCGATTGCATC CCCAAAACGGCCGTCAAATAGAGTCACTGCCTTGCCTGACACGGGGTAGC ACCCATCGATTGGCATGCGCGGCGCTTGACGGCGGCCAAGAGCAAAGGTC GTGGAAAAGGCATGCGCTGGCATCCCAGCCTGCGTGCGTTACTATCCGAG CGATATTTCTTCTTGTTTTATGGGCTTTTCGTTTTCTGTTGTTTTTGGTT GTGCAGGCGTCTGTCCGCATCGACAGCTTTCTATGGGCTCAACGAGCACG TAAACTGCGAGGCAGCTGGCATCGTTCTTGCAGCGAATCGAGCGTTCAGC ATTGGCCGGAATGATCGCTTGTTCGAAGCAACCCCACTCCGCTATCTTCT CCTTCCACCGCCTAAACCCCTCTTCTATCTCCACTCCGCCTTCATCGCCC CCTTCTCCCCTATTTCGATCATTTTCCGCCCCTGCCGGAAAACACATAAC AACCAAATCAAAAAAAGGTCATAACCCTGGAGAAACTGCGGACGGCCTAC AAAACCTTCGCCGCCCGCCGTGAGCTCATGGCGCAGTACGACCTCTTCCT CTGCGACGACCGCATCCTGCCAATGATGACCAAGGCGCTCGGCAAGACGT TCCTCGCGGCTCGCAAGCAGCCAGTTGCGGTGCGCATCACCCGCAAGACG TCGCTGCCGCTGGCCGTGGCGCGCGCGCGGGACGCCACGTTCCTGATACC GAGTTACGGCGTGTGCTGGGGTTTGAAGGTGCGTTCTCTCTCTTGATGCG CTGTTTGAAGCGGGGAGGAGTCGGCCAGTCAGTCGCCATTTTTTGAGTGC GGCTCGTTCGTGGCACGGTTCCTTTGGGTGCACTCGTTTCTGCGGGTGCC GATGACGCTGTTCCAACCCGCTCTTTGTTGCTCTTGCGTCCCGGGTCGTG CTCCGCCGTCGCCCTTTTTCTGGAAGGCGGTTTAATCATTCTGCTCCCCT CACTTTCTCTCTCCTAACTTCGCCACTTCCCGTGCCTCCCTCCCGCATGC CGCCGGCCGCATTCAGGTGGCGACGATCGACATGCCAGCGGAGCACGTGG TCGATAATGTCGTGGCGGCGGTGGCGCGCGCTGCCGACAAGATGATCCCT GGCGGCTGGAAGAACATCCAGGGCCTGCACCTCCAGGCGACGGGCTCCGT GGCGCTGCCCATCTACAGCGCCGTCCTCGAGACGATCGCGCCGGAGCCGC CGTCACCGCCAGGGGCTGCGGAGGAGGACGCGGCCAAGGCTGAGGCGGCA GCAGCGCGAGCCAAGGCGCGGGCGGAGAAGGCGGCGAAGCGGCGGATTAA GAGCCCACTGCTCAAGGCGCAGCTGCGGAAGCTCGCCCACGGGGAGAAGG CCGCGGCGGCGGCTGCTGAGGTGGGGGAATTGGCGGCAGGGGGGGTGACA AAGATAAAGAAGGGCAAGGCGAAGGGGGGGGCAGCGAAAGCGGCGAAGGA GAACTCAGATCCGAAGGGCGCGAGTGCTCCTTCGACAGCGGCGGGGGAGG GCGGCGGCACGACGACGCCTTCTTCAAAGAAACCCAAGAAGCAGACACCG AAGGCCGCGGCCGGTTCGATGGTGGTGGCGGCGGCGCCAACGGAAGCGAA GGCCGCGCCGGCGAAGCTGCCGGAGTCCAAGAAGCGGCCGGCGGCTGACG TGGCGGCAGCTGCCAATGGGGTTGATGCGGCTGCTTCTGCGCCGAAGAAG GCGAAAGCAAAGTCCGCCGAGGAGGCTGCTGGTAGCTCCACCGCCACCGC CGCTGCGCCGCCACCGAGCGGCAAGAAGTCGGACCGCAAGCGGCCAAGCC CGTCGGAGGACACTCTGCAGCCAGGGACGGCAACAGTGGCGACTCCGGCT GCAAAGAAGAGCAAGCGGGTTGCGACTCCGGCGGTGACTGCGGTGGCGGC GGCGAACGGCGAGAAAGCGAAGGAGGCGGCGGCCGCGGCGGTGGTGGTGA CGTCGGCCGCAAAGGGCACGGCAAGGAAGGCCAAAACAGCCAAGCCGGCA ACTCCGGCGCCGGCGACCAAGACCGTAATTCCGGCGGCTACGCCGGCGGC ACCGTCGGCGGCGACCCCAGCTGCGGCAATGTCGATGGCCGCTCCTGCTA ACCCCAGCGGCACCGCCACCCCAGCAGTGAAAGCCGTTAACAGCAAGGCT GCTGCTTCCGGGGCGAAGTCGCGGAAAGCGATGGCGGCGGCGGCACCGGC GTCGGACAAAGCCGGGGCATCCGGCGCGGCTGCCGCAGCAGCCGCTCCGA AAAAGGCGCTAGAGGCCGCAGCTGCGCCGCGAAAGTCCGCAAAGAAAGCG GTGGCAGCGACGCCAAAGTCGGCAGCCGGCAAGCGCAAGACGCGTTCCGA GGCATAATGTATGAAACAGTAATGAAACACAAAACCGT
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Coding sequence (CDS) from alignment at P-wetherbeei_contig692:4509..7696+

>mRNA_P-wetherbeei_contig692.4.1 ID=mRNA_P-wetherbeei_contig692.4.1|Name=mRNA_P-wetherbeei_contig692.4.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=1641bp|location=Sequence derived from alignment at P-wetherbeei_contig692:4509..7696+ (Phaeothamnion wetherbeei SAG_119_79)
ATGTGTTTGTTCGTCAAGGAGGGTAGCAAGGATTCGGTGAAGAAGATGCT
GGAGGCGACTCCCGTCGAGGGCCTGTCCAAGGTCATAACCCTGGAGAAAC
TGCGGACGGCCTACAAAACCTTCGCCGCCCGCCGTGAGCTCATGGCGCAG
TACGACCTCTTCCTCTGCGACGACCGCATCCTGCCAATGATGACCAAGGC
GCTCGGCAAGACGTTCCTCGCGGCTCGCAAGCAGCCAGTTGCGGTGCGCA
TCACCCGCAAGACGTCGCTGCCGCTGGCCGTGGCGCGCGCGCGGGACGCC
ACGTTCCTGATACCGAGTTACGGCGTGTGCTGGGGTTTGAAGGTGGCGAC
GATCGACATGCCAGCGGAGCACGTGGTCGATAATGTCGTGGCGGCGGTGG
CGCGCGCTGCCGACAAGATGATCCCTGGCGGCTGGAAGAACATCCAGGGC
CTGCACCTCCAGGCGACGGGCTCCGTGGCGCTGCCCATCTACAGCGCCGT
CCTCGAGACGATCGCGCCGGAGCCGCCGTCACCGCCAGGGGCTGCGGAGG
AGGACGCGGCCAAGGCTGAGGCGGCAGCAGCGCGAGCCAAGGCGCGGGCG
GAGAAGGCGGCGAAGCGGCGGATTAAGAGCCCACTGCTCAAGGCGCAGCT
GCGGAAGCTCGCCCACGGGGAGAAGGCCGCGGCGGCGGCTGCTGAGGTGG
GGGAATTGGGGGGGGCAGCGAAAGCGGCGAAGGAGAACTCAGATCCGAAG
GGCGCGAGTGCTCCTTCGACAGCGGCGGGGGAGGGCGGCGGCACGACGAC
GCCTTCTTCAAAGAAACCCAAGAAGCAGACACCGAAGGCCGCGGCCGGTT
CGATGGTGGTGGCGGCGGCGCCAACGGAAGCGAAGGCCGCGCCGGCGAAG
CTGCCGGAGTCCAAGAAGCGGCCGGCGGCTGACGTGGCGGCAGCTGCCAA
TGGGGTTGATGCGGCTGCTTCTGCGCCGAAGAAGGCGAAAGCAAAGTCCG
CCGAGGAGGCTGCTGGTAGCTCCACCGCCACCGCCGCTGCGCCGCCACCG
AGCGGCAAGAAGTCGGACCGCAAGCGGCCAAGCCCGTCGGAGGACACTCT
GCAGCCAGGGACGGCAACAGTGGCGACTCCGGCTGCAAAGAAGAGCAAGC
GGGTTGCGACTCCGGCGGTGACTGCGGTGGCGGCGGCGAACGGCGAGAAA
GCGAAGGAGGCGGCGGCCGCGGCGGTGGTGGTGACGTCGGCCGCAAAGGG
CACGGCAAGGAAGGCCAAAACAGCCAAGCCGGCAACTCCGGCGCCGGCGA
CCAAGACCGTAATTCCGGCGGCTACGCCGGCGGCACCGTCGGCGGCGACC
CCAGCTGCGGCAATGTCGATGGCCGCTCCTGCTAACCCCAGCGGCACCGC
CACCCCAGCAGTGAAAGCCGTTAACAGCAAGGCTGCTGCTTCCGGGGCGA
AGTCGCGGAAAGCGATGGCGGCGGCGGCACCGGCGTCGGACAAAGCCGGG
GCATCCGGCGCGGCTGCCGCAGCAGCCGCTCCGAAAAAGGCGCTAGAGGC
CGCAGCTGCGCCGCGAAAGTCCGCAAAGAAAGCGGTGGCAGCGACGCCAA
AGTCGGCAGCCGGCAAGCGCAAGACGCGTTCCGAGGCATAA
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